View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18233_low_9 (Length: 237)
Name: NF18233_low_9
Description: NF18233
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18233_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 90 - 224
Target Start/End: Complemental strand, 50235314 - 50235180
Alignment:
| Q |
90 |
cagacacatcgcaaattctgctatttgctcgagatgtgaagagaaagacgaaacattcttgcactgtgttcgcgagtgtcgatactccatcacaatctgg |
189 |
Q |
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| T |
50235314 |
cagacacatcgcaaattctgctatttgctcgatatgtgaagagaaagatgaaaccttcttgcactgtgttcgcgactgtcgatactccatcacaatctag |
50235215 |
T |
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| Q |
190 |
caaaaaatcggcttcacaagtcctgatttcttctc |
224 |
Q |
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| T |
50235214 |
caaaaaatcggcttcacaagtcctgatttcttctc |
50235180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 50235645 - 50235720
Alignment:
| Q |
18 |
aggtggaggtcgtggatgtcaatgatagggacaagggaaccaagtaaaccatgagaactccaattgctaaaccaga |
93 |
Q |
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| T |
50235645 |
aggtggaggtcgtggatgtcaatgatagggacaagggaaccaagtaaaccatgagaactccaattgctaaaccaga |
50235720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 39463233 - 39463172
Alignment:
| Q |
30 |
tggatgtcaatgatagggacaagggaaccaagtaaaccatgagaactccaattgctaaacca |
91 |
Q |
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| T |
39463233 |
tggatgtcaatgatagggaccaaggaaccaaggtagccatgagagctccaattgctgaacca |
39463172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 6640099 - 6640169
Alignment:
| Q |
21 |
tggaggtcgtggatgtcaatgatagggacaagggaaccaagtaaaccatgagaactccaattgctaaacca |
91 |
Q |
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| T |
6640099 |
tggatgtcgtggatgtcaatgatagggatcaaggaaccaaggtagccatgagagctccaattactgaacca |
6640169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 42402305 - 42402369
Alignment:
| Q |
27 |
tcgtggatgtcaatgatagggacaagggaaccaagtaaaccatgagaactccaattgctaaacca |
91 |
Q |
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| T |
42402305 |
tcgtggatgtcaatgatagggaccaatgaaccaaggtagccatgagagctccaattactgaacca |
42402369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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