View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18234_high_11 (Length: 430)

Name: NF18234_high_11
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18234_high_11
NF18234_high_11
[»] chr7 (12 HSPs)
chr7 (17-422)||(27335527-27335932)
chr7 (255-324)||(5757387-5757456)
chr7 (262-311)||(39007658-39007707)
chr7 (255-311)||(6797394-6797450)
chr7 (255-311)||(44141260-44141316)
chr7 (262-320)||(34875497-34875555)
chr7 (256-327)||(46346709-46346780)
chr7 (255-291)||(924426-924462)
chr7 (255-311)||(45402879-45402935)
chr7 (270-320)||(16933244-16933294)
chr7 (270-320)||(16938627-16938677)
chr7 (270-311)||(24359887-24359928)
[»] chr3 (17 HSPs)
chr3 (255-327)||(28299945-28300017)
chr3 (256-311)||(32232993-32233048)
chr3 (255-320)||(47728389-47728454)
chr3 (255-320)||(51682002-51682067)
chr3 (255-311)||(23755286-23755342)
chr3 (262-320)||(37319460-37319518)
chr3 (262-320)||(53594976-53595034)
chr3 (255-311)||(23699328-23699384)
chr3 (255-311)||(23717783-23717839)
chr3 (255-311)||(23736239-23736295)
chr3 (270-317)||(30947914-30947961)
chr3 (270-320)||(33414013-33414063)
chr3 (255-320)||(26662538-26662603)
chr3 (270-311)||(41192359-41192400)
chr3 (262-311)||(41568839-41568888)
chr3 (270-311)||(51846789-51846830)
chr3 (262-306)||(39195122-39195166)
[»] scaffold0460 (1 HSPs)
scaffold0460 (255-311)||(1605-1661)
[»] chr8 (15 HSPs)
chr8 (255-312)||(2522868-2522925)
chr8 (262-311)||(40247294-40247343)
chr8 (255-311)||(12355423-12355479)
chr8 (262-308)||(10443582-10443628)
chr8 (262-320)||(13526671-13526729)
chr8 (262-320)||(13616206-13616264)
chr8 (270-311)||(9852286-9852327)
chr8 (279-324)||(15181815-15181860)
chr8 (270-311)||(34648137-34648178)
chr8 (281-324)||(39022001-39022044)
chr8 (270-320)||(30413930-30413980)
chr8 (270-320)||(41451121-41451171)
chr8 (278-311)||(30651973-30652006)
chr8 (255-320)||(34633321-34633386)
chr8 (280-324)||(8550529-8550573)
[»] chr4 (12 HSPs)
chr4 (255-320)||(25574128-25574193)
chr4 (256-311)||(24686574-24686629)
chr4 (262-320)||(16298929-16298987)
chr4 (270-311)||(30357823-30357864)
chr4 (270-311)||(38010157-38010198)
chr4 (270-324)||(1729611-1729665)
chr4 (270-320)||(10472513-10472563)
chr4 (270-320)||(13635725-13635775)
chr4 (262-320)||(43852621-43852678)
chr4 (270-320)||(49492512-49492562)
chr4 (262-311)||(2848118-2848167)
chr4 (255-324)||(50563725-50563793)
[»] chr2 (10 HSPs)
chr2 (262-311)||(39548050-39548099)
chr2 (256-311)||(5098718-5098773)
chr2 (255-324)||(4281784-4281853)
chr2 (255-320)||(25995287-25995352)
chr2 (262-311)||(13081869-13081918)
chr2 (262-311)||(16142084-16142133)
chr2 (262-311)||(24024633-24024682)
chr2 (255-320)||(36636937-36637002)
chr2 (262-311)||(40853688-40853737)
chr2 (270-320)||(9143601-9143651)
[»] chr1 (18 HSPs)
chr1 (255-324)||(37639342-37639411)
chr1 (255-311)||(13673892-13673948)
chr1 (255-311)||(20372206-20372262)
chr1 (262-320)||(33097413-33097471)
chr1 (255-324)||(35198177-35198246)
chr1 (262-311)||(51801742-51801791)
chr1 (256-311)||(13590469-13590524)
chr1 (262-325)||(44260526-44260589)
chr1 (270-320)||(44688610-44688660)
chr1 (257-311)||(5077457-5077511)
chr1 (262-320)||(31529665-31529723)
chr1 (262-312)||(2741044-2741094)
chr1 (270-320)||(11421610-11421660)
chr1 (270-320)||(43452558-43452608)
chr1 (270-320)||(49936937-49936987)
chr1 (270-320)||(50351819-50351869)
chr1 (255-320)||(28323332-28323397)
chr1 (255-320)||(34369661-34369726)
[»] scaffold0069 (1 HSPs)
scaffold0069 (255-311)||(51360-51416)
[»] scaffold0006 (2 HSPs)
scaffold0006 (255-311)||(171506-171562)
scaffold0006 (255-311)||(209327-209383)
[»] chr5 (9 HSPs)
chr5 (256-324)||(16668790-16668858)
chr5 (255-311)||(33868156-33868212)
chr5 (262-311)||(7183145-7183194)
chr5 (255-311)||(16552648-16552704)
chr5 (262-311)||(4674968-4675017)
chr5 (256-324)||(18465552-18465620)
chr5 (255-311)||(39056461-39056517)
chr5 (281-324)||(28070149-28070192)
chr5 (262-311)||(15913140-15913189)
[»] scaffold0012 (1 HSPs)
scaffold0012 (255-311)||(119203-119259)
[»] chr6 (8 HSPs)
chr6 (256-324)||(18611190-18611258)
chr6 (262-311)||(27079939-27079988)
chr6 (270-311)||(30908668-30908709)
chr6 (255-308)||(32556345-32556398)
chr6 (265-320)||(4338620-4338675)
chr6 (270-320)||(7089098-7089148)
chr6 (262-308)||(16968035-16968081)
chr6 (270-320)||(31216678-31216728)
[»] scaffold0002 (1 HSPs)
scaffold0002 (255-308)||(450203-450256)
[»] scaffold0717 (1 HSPs)
scaffold0717 (262-311)||(7351-7400)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 27335932 - 27335527
Alignment:
Q  17 gtttgatcagtaatctctttgttttgcggttttcgttataaggaggcatggttcatgtccatgtgtgtaagactgctgtttatgggaattactttcctac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  27335932 gtttgatcagtaatctctttgttttgcggttttcgttataaggaggcatggttcatgtccatgtgtgtaagactgctatttatgggaattgctttcctac 27335833  T
Q  117 tccc------agcacacccccaa-aatcgtttgaaagataactcttttaagagtgtannnnnnnnnagttttaacgcctttggtagataatttttaatgg 209  Q
    ||||      ||||||||||||| |||||||||||||||||||||     |||||||         ||||||||||||||||||||||||||||||||||    
T  27335832 tccctctcccagcacacccccaacaatcgtttgaaagataactct-----gagtgtatttttttt-agttttaacgcctttggtagataatttttaatgg 27335739  T
Q  210 atatttttcaacataataagatattaagggggctagaaaaacacagcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcac 309  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| ||||||||| |||||||||||||||||    
T  27335738 atatttttcaacataaaaagatattaagggggctagaaaaacacggcaaaagttattataaataagtcattttcttatgcac-ctgcataaacacttcac 27335640  T
Q  310 aattatcagatctagactcataggattgcatactccttttgcccttttccccatcaacggtaacacacagtagagtttaattgaccaacgattcatgatt 409  Q
    ||  |||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| ||||    
T  27335639 aaccatcagatctagacttacaggattgcatactccttttgccctttttcccatcaacggtaacacaaagtagagttcaattgaccaacgattcaggatt 27335540  T
Q  410 catgtttcttctc 422  Q
    |||||||||||||    
T  27335539 catgtttcttctc 27335527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 5757387 - 5757456
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagatctag 324  Q
    |||||| ||||||| |||||| |||||||||||||||  ||||||||||||||||||  |||||||||||    
T  5757387 gcaaaagttattatgcataagacatttccttatgcaccgtgcataaacacttcacaaccatcagatctag 5757456  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 39007707 - 39007658
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  39007707 ttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 39007658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 6797450 - 6797394
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||| ||||||| |||||||||||||||||||||  |||||||||||||||||||    
T  6797450 gcaaaagttattatgcataagtcatttccttatgcatcctgcataaacacttcacaa 6797394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 44141316 - 44141260
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||| |||| || |||||||||||||||||||||| |||||||||||||||||||    
T  44141316 gcaaaagttatcatgcataagtcatttccttatgcaccctgcataaacacttcacaa 44141260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 34875497 - 34875555
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||| |||||| ||||||||||||||| |||||||||||||||||||  |||||||    
T  34875497 ttattatgcataagccatttccttatgcaccctgcataaacacttcacaaccatcagat 34875555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 46346780 - 46346709
Alignment:
Q  256 caaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagatctagact 327  Q
    ||||| ||||||| |||||||||||| ||||||||  ||| |||||||||||||||  |||| |||||||||    
T  46346780 caaaagttattatgcataagtcattttcttatgcatcctgtataaacacttcacaaccatcatatctagact 46346709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 924426 - 924462
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcac 291  Q
    |||||||||||||| ||||||||||||||||||||||    
T  924426 gcaaaaattattatgcataagtcatttccttatgcac 924462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 45402935 - 45402879
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||| ||||||| ||||||| |||||||||||||| | |||||||||||| ||||    
T  45402935 gcaaaagttattatgcataagttatttccttatgcacccagcataaacactttacaa 45402879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 16933294 - 16933244
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||||||||||||||||||  ||||||||||| ||||||  |||||||    
T  16933294 cataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 16933244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 16938677 - 16938627
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||||||||||||||||||  ||||||||||| ||||||  |||||||    
T  16938677 cataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 16938627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 24359887 - 24359928
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||||||||||||||||||  ||||| ||||||||||||    
T  24359887 cataagtcatttccttatgcaccgtgcatcaacacttcacaa 24359928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 28300017 - 28299945
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagatctagact 327  Q
    |||||||||||||| ||||||||||||||||||| ||  |||||||||||||||||| |||||||||||||||    
T  28300017 gcaaaaattattatgcataagtcatttccttatgtaccatgcataaacacttcacaactatcagatctagact 28299945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 32232993 - 32233048
Alignment:
Q  256 caaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  32232993 caaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 32233048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 47728389 - 47728454
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    |||||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||  |||||||    
T  47728389 gcaaaagttattatgcataagtcattttcttatgcaccctgcataaacacttcacaaccatcagat 47728454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 51682067 - 51682002
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    |||||| ||||||| |||||||||||||||||||||| ||||||||||||||| |||  |||||||    
T  51682067 gcaaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcgcaaccatcagat 51682002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 23755286 - 23755342
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||| ||||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  23755286 gcaaaagttattatgcataagacatttccttatgcaccctgcataaacacttcacaa 23755342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 37319518 - 37319460
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||| |||||||||||| ||||||||| |||||||||||||||||| | |||||||    
T  37319518 ttattatgcataagtcattttcttatgcaccctgcataaacacttcacattcatcagat 37319460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 53594976 - 53595034
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||| |||||| ||||| ||||||||| |||||||||||||||||||  |||||||    
T  53594976 ttattatgcataagccattttcttatgcaccctgcataaacacttcacaaccatcagat 53595034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 23699328 - 23699384
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||| ||||||| |||||| ||||| ||||| ||| |||||||||||||||||||    
T  23699328 gcaaaagttattatgcataagacattttcttatacaccctgcataaacacttcacaa 23699384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 23717783 - 23717839
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||| ||||||| |||||| ||||| ||||| ||| |||||||||||||||||||    
T  23717783 gcaaaagttattatgcataagacattttcttatacaccctgcataaacacttcacaa 23717839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 23736239 - 23736295
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||| ||||||| |||||| ||||| ||||| ||| |||||||||||||||||||    
T  23736239 gcaaaagttattatgcataagacattttcttatacaccctgcataaacacttcacaa 23736295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 317
Target Start/End: Complemental strand, 30947961 - 30947914
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatca 317  Q
    ||||||||||||||||||||||  ||||||||||| ||||||| ||||    
T  30947961 cataagtcatttccttatgcaccgtgcataaacacatcacaatcatca 30947914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 33414063 - 33414013
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||||||||||||||||||  ||||||||||| ||||||  |||||||    
T  33414063 cataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 33414013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 26662603 - 26662538
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    |||||| ||||| | |||||| |||||||||||||||  ||||||||||| ||||||  |||||||    
T  26662603 gcaaaagttattgtgcataagccatttccttatgcaccgtgcataaacacatcacaaccatcagat 26662538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 41192400 - 41192359
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||||||||||||||||||  | ||||||||||||||||    
T  41192400 cataagtcatttccttatgcaccgtacataaacacttcacaa 41192359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 41568839 - 41568888
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||| ||||||||| ||||||||||||  |||||||| |||||||||    
T  41568839 ttattatgcataagtcaattccttatgcaccatgcataaatacttcacaa 41568888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 51846830 - 51846789
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||| |||||||||||||||  ||||||||||||||||||    
T  51846830 cataagccatttccttatgcaccgtgcataaacacttcacaa 51846789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 39195166 - 39195122
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacactt 306  Q
    ||||||| ||||||||||||||| |||||| |||||| |||||||    
T  39195166 ttattatgcataagtcatttcctcatgcaccctgcatgaacactt 39195122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 1605 - 1661
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  1605 gcaaaaattattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 1661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 2522868 - 2522925
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaat 312  Q
    |||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  2522868 gcaaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaat 2522925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 40247343 - 40247294
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  40247343 ttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 40247294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 12355423 - 12355479
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||| ||||||  |||||||||||| ||||||||| |||||||||||||||||||    
T  12355423 gcaaaagttattacgcataagtcattttcttatgcaccctgcataaacacttcacaa 12355479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 10443628 - 10443582
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttca 308  Q
    ||||||| |||||| ||||||||||||||| ||||||||||||||||    
T  10443628 ttattatgcataagccatttccttatgcaccctgcataaacacttca 10443582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 13526729 - 13526671
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||| |||||| |||||||||||| || |||||||||||||||||||  |||||||    
T  13526729 ttattatgcataagccatttccttatgtactctgcataaacacttcacaaccatcagat 13526671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 13616264 - 13616206
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||| |||||| |||||||||||| || |||||||||||||||||||  |||||||    
T  13616264 ttattatgcataagccatttccttatgtactctgcataaacacttcacaaccatcagat 13616206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 9852286 - 9852327
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  9852286 cataagtcatttccttatgcaccgtgcataaacacttcacaa 9852327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 15181815 - 15181860
Alignment:
Q  279 tttccttatgcacactgcataaacacttcacaattatcagatctag 324  Q
    ||||||||||||| |||||||||||||||||||  |||||||||||    
T  15181815 tttccttatgcaccctgcataaacacttcacaagcatcagatctag 15181860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 34648178 - 34648137
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  34648178 cataagtcatttccttatgcaccgtgcataaacacttcacaa 34648137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 39022001 - 39022044
Alignment:
Q  281 tccttatgcacactgcataaacacttcacaattatcagatctag 324  Q
    |||||||||||  ||||||||||||||||||| |||||||||||    
T  39022001 tccttatgcaccgtgcataaacacttcacaatcatcagatctag 39022044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 30413930 - 30413980
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||||||||||||||||||  ||||||||||| ||||||  |||||||    
T  30413930 cataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 30413980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 41451121 - 41451171
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    |||||| |||||||||||||||  ||||||||||| ||||||| |||||||    
T  41451121 cataagccatttccttatgcaccgtgcataaacacgtcacaatcatcagat 41451171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 30651973 - 30652006
Alignment:
Q  278 atttccttatgcacactgcataaacacttcacaa 311  Q
    |||||||||||||| |||||||||||||||||||    
T  30651973 atttccttatgcaccctgcataaacacttcacaa 30652006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 34633386 - 34633321
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    |||||| ||||  ||||||||| ||||||||||||||  ||||||||||| ||||||  |||||||    
T  34633386 gcaaaagttatggtacataagttatttccttatgcaccgtgcataaacacatcacaaccatcagat 34633321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 8550529 - 8550573
Alignment:
Q  280 ttccttatgcacactgcataaacacttcacaattatcagatctag 324  Q
    ||||||||||||  ||||||||||||||||||  |||||||||||    
T  8550529 ttccttatgcaccgtgcataaacacttcacaaccatcagatctag 8550573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 25574193 - 25574128
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  25574193 gcaaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcagat 25574128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 24686574 - 24686629
Alignment:
Q  256 caaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  24686574 caaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 24686629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 16298929 - 16298987
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||| |||||||||||||||||||||| |||||||| ||||||||||  |||||||    
T  16298929 ttattatgcataagtcatttccttatgcaccctgcataatcacttcacaaccatcagat 16298987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 30357823 - 30357864
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  30357823 cataagtcatttccttatgcaccgtgcataaacacttcacaa 30357864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 38010157 - 38010198
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  38010157 cataagtcatttccttatgcaccatgcataaacacttcacaa 38010198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 324
Target Start/End: Complemental strand, 1729665 - 1729611
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagatctag 324  Q
    ||||||||||||| |||| |||  ||||||||||||||||||  |||||||||||    
T  1729665 cataagtcatttctttatacaccgtgcataaacacttcacaaccatcagatctag 1729611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 10472513 - 10472563
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||||||||||||||||||  |||||||||| |||||||  |||||||    
T  10472513 cataagtcatttccttatgcaccgtgcataaacatttcacaaccatcagat 10472563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 13635775 - 13635725
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||||||||||||||||||  ||||||||||| ||||||  |||||||    
T  13635775 cataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 13635725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 43852678 - 43852621
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||| |||||||||||| |||||||||| |||||||| |||||| ||| |||||||    
T  43852678 ttattatgcataagtcattttcttatgcaca-tgcataaatacttcataatcatcagat 43852621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 49492562 - 49492512
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||||||||||||||||||  ||||||||||| ||||||  |||||||    
T  49492562 cataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 49492512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 2848167 - 2848118
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||| ||||||||| |||||||||||| ||||||||| |||| ||||    
T  2848167 ttattatgcataagtcagttccttatgcaccctgcataaatactttacaa 2848118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 50563793 - 50563725
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagatctag 324  Q
    |||||| ||||||| ||||||  ||||| | |||||| |||||||||||||||||||  |||||||||||    
T  50563793 gcaaaagttattatgcataagatatttcat-atgcaccctgcataaacacttcacaaccatcagatctag 50563725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 39548050 - 39548099
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  39548050 ttattatacataagtcatttccttatgcaccctgcataaacacttcacaa 39548099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 5098718 - 5098773
Alignment:
Q  256 caaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  5098718 caaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 5098773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 4281853 - 4281784
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagatctag 324  Q
    |||||| ||||||| |||||| |||||||||||| || ||| |||||||||||||||  |||||||||||    
T  4281853 gcaaaagttattatgcataagacatttccttatgtactctgtataaacacttcacaaccatcagatctag 4281784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 25995287 - 25995352
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    |||||| ||||||| |||||| ||||||||||||||| ||||||||| |||||||||  |||||||    
T  25995287 gcaaaagttattatgcataagacatttccttatgcactctgcataaatacttcacaaccatcagat 25995352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 13081918 - 13081869
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||| ||||||||||||| |||||||| || ||||||||||||||||    
T  13081918 ttattatgcataagtcatttcattatgcaccctacataaacacttcacaa 13081869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 16142133 - 16142084
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||| || ||| ||||||||||||||| |||||||||||||||||||    
T  16142133 ttattatgcacaagccatttccttatgcacgctgcataaacacttcacaa 16142084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 24024682 - 24024633
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||| ||||||||| ||||||||||||  ||||||||||||||||||    
T  24024682 ttattatgcataagtcaattccttatgcaccatgcataaacacttcacaa 24024633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 36637002 - 36636937
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    |||||| ||||||| |||||||||||| |||||| || || ||||||||||||||||  |||||||    
T  36637002 gcaaaagttattatgcataagtcattttcttatgtaccctacataaacacttcacaaccatcagat 36636937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 40853737 - 40853688
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||| |||||| ||||||||||||||  |||||||||||||||||||    
T  40853737 ttattatgcataagccatttccttatgcatcctgcataaacacttcacaa 40853688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 9143601 - 9143651
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||| ||||||||||||||  ||||||||||| ||||||| |||||||    
T  9143601 cataagttatttccttatgcaccgtgcataaacacatcacaatcatcagat 9143651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 37639342 - 37639411
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagatctag 324  Q
    |||||| ||||||| |||||| ||||||||||||||| |||||||||||||||||||  |||||||||||    
T  37639342 gcaaaagttattatgcataagacatttccttatgcaccctgcataaacacttcacaaccatcagatctag 37639411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 13673892 - 13673948
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||    
T  13673892 gcaaaaattattatgcataagtcatttccttatgcaccctgtataaacacttcacaa 13673948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 20372206 - 20372262
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||    
T  20372206 gcaaaaattattatgcataagtcattttcttatgcaccctgcataaacacttcacaa 20372262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 33097413 - 33097471
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  33097413 ttattatgcataagtcatttccttatgcaccctgcataaacacttcacaaccatcagat 33097471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 35198246 - 35198177
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagatctag 324  Q
    |||||| ||||||| |||||| ||||||||||||||| ||||||||||||||||||   |||||||||||    
T  35198246 gcaaaagttattatgcataagacatttccttatgcaccctgcataaacacttcacagccatcagatctag 35198177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 51801791 - 51801742
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  51801791 ttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 51801742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 256 - 311
Target Start/End: Original strand, 13590469 - 13590524
Alignment:
Q  256 caaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||| ||||||| |||||||||||||||||||||| |||||||||||||| ||||    
T  13590469 caaaagttattatgcataagtcatttccttatgcaccctgcataaacactttacaa 13590524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 325
Target Start/End: Original strand, 44260526 - 44260589
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagatctaga 325  Q
    ||||||| | |||||||||||||||||||| |||||||||||||||||||  ||||||| ||||    
T  44260526 ttattatgcgtaagtcatttccttatgcaccctgcataaacacttcacaaccatcagatttaga 44260589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 44688660 - 44688610
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    |||||||||||||||||||||| |||||||||||||||||||  |||||||    
T  44688660 cataagtcatttccttatgcacgctgcataaacacttcacaaccatcagat 44688610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 311
Target Start/End: Complemental strand, 5077511 - 5077457
Alignment:
Q  257 aaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||| ||||||| |||||||||||||||||||| | |||||||| ||||||||||    
T  5077511 aaaagttattatgcataagtcatttccttatgcgccctgcataagcacttcacaa 5077457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 31529723 - 31529665
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||| |||||| |||||||||||||||  ||||||||||||||||||  |||||||    
T  31529723 ttattatgcataagccatttccttatgcaccatgcataaacacttcacaaccatcagat 31529665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 312
Target Start/End: Original strand, 2741044 - 2741094
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaat 312  Q
    ||||||| ||||||||||||| ||||| || ||||||||||| ||||||||    
T  2741044 ttattatgcataagtcatttctttatgtactctgcataaacatttcacaat 2741094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 11421610 - 11421660
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||| ||||||||||||||||  ||||||||||||||||||  |||||||    
T  11421610 cataaatcatttccttatgcaccgtgcataaacacttcacaaccatcagat 11421660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 43452558 - 43452608
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||| ||||||||||||||  ||||||||||| |||||| ||||||||    
T  43452558 cataagttatttccttatgcaccgtgcataaacacatcacaactatcagat 43452608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 49936987 - 49936937
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||||||||||||||||||  ||||||||||| ||||||  |||||||    
T  49936987 cataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 49936937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 50351819 - 50351869
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||||||||||||||||||  ||||||||||| ||||||  |||||||    
T  50351819 cataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 50351869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 28323397 - 28323332
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    |||||| ||||||| ||||||||||||  |||||||| || |||||||||| |||||  |||||||    
T  28323397 gcaaaagttattatgcataagtcatttttttatgcaccctccataaacactacacaaccatcagat 28323332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 34369661 - 34369726
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    |||||||||||  | |||||| ||||| |||||||||  ||||||||||||||||||  |||||||    
T  34369661 gcaaaaattatggtgcataagccattttcttatgcaccgtgcataaacacttcacaaccatcagat 34369726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 51360 - 51416
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||    
T  51360 gcaaaaattattatgcataagtcattttcttatgcaccctgcataaacacttcacaa 51416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 171506 - 171562
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||    
T  171506 gcaaaaattattatgcataagtcatttccttatgcaccctgtataaacacttcacaa 171562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 209327 - 209383
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||| ||||||| |||||||||||| ||||||||| |||||||||||||||||||    
T  209327 gcaaaagttattatgcataagtcattttcttatgcaccctgcataaacacttcacaa 209383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 16668858 - 16668790
Alignment:
Q  256 caaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagatctag 324  Q
    ||||| ||||||| |||||| ||||||||||||||| |||||||||||||||||||  |||||||||||    
T  16668858 caaaagttattatgcataagacatttccttatgcaccctgcataaacacttcacaaccatcagatctag 16668790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 33868156 - 33868212
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  33868156 gcaaaagttattatgcataagtcatttccttatgcaccctgcataaacacttcacaa 33868212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 7183145 - 7183194
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  7183145 ttattatgcataagtcagttccttatgcacactgcataaacacttcacaa 7183194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 16552704 - 16552648
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||| ||||||| ||||||||||||||||||||||  ||||||||||||||||||    
T  16552704 gcaaaagttattatgcataagtcatttccttatgcaccatgcataaacacttcacaa 16552648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 4674968 - 4675017
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||| | |||||||||||||||||||| |||||||||||||||||||    
T  4674968 ttattatgcgtaagtcatttccttatgcaccctgcataaacacttcacaa 4675017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 18465620 - 18465552
Alignment:
Q  256 caaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagatctag 324  Q
    ||||| ||||||| |||||| |||||| |||||||  |||||||||||||||||||  |||||||||||    
T  18465620 caaaagttattatgcataagacatttcattatgcatcctgcataaacacttcacaaccatcagatctag 18465552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 39056517 - 39056461
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||| ||||||| ||||| |||||| ||||||||| |||| ||||||||||||||    
T  39056517 gcaaaagttattatgcataaatcattttcttatgcaccctgcttaaacacttcacaa 39056461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 324
Target Start/End: Complemental strand, 28070192 - 28070149
Alignment:
Q  281 tccttatgcacactgcataaacacttcacaattatcagatctag 324  Q
    |||||||||||  |||||||||||||||||| ||||||||||||    
T  28070192 tccttatgcaccgtgcataaacacttcacaactatcagatctag 28070149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 15913189 - 15913140
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||| ||||||||| |||||||||||  |||||||||||||| ||||    
T  15913189 ttattatgcataagtcagttccttatgcatcctgcataaacactttacaa 15913140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 119203 - 119259
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    |||||| |||||||||||||||||||||  ||||||| |||||||||||||||||||    
T  119203 gcaaaagttattatacataagtcatttctatatgcaccctgcataaacacttcacaa 119259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 18611190 - 18611258
Alignment:
Q  256 caaaaattattatacataagtcatttccttatgcacactgcataaacacttcacaattatcagatctag 324  Q
    ||||| ||||||| |||||| |||||| |||||||| |||||||||||||||||||  |||||||||||    
T  18611190 caaaagttattatgcataagacatttctttatgcactctgcataaacacttcacaaccatcagatctag 18611258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 27079988 - 27079939
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||| |||||||||||| |||||||||  ||||||||||||||||||    
T  27079988 ttattatgcataagtcattttcttatgcaccgtgcataaacacttcacaa 27079939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 30908668 - 30908709
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  30908668 cataagtcatttccttatgcaccgtgcataaacacttcacaa 30908709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 32556345 - 32556398
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttca 308  Q
    |||||| ||||||| |||||||||||| ||||||||| ||||||||||| ||||    
T  32556345 gcaaaagttattatgcataagtcattttcttatgcaccctgcataaacaattca 32556398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 320
Target Start/End: Complemental strand, 4338675 - 4338620
Alignment:
Q  265 ttatacataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    |||| |||||| ||||| ||||||||| |||||||||||||||| ||| |||||||    
T  4338675 ttatgcataagccattttcttatgcaccctgcataaacacttcaaaatcatcagat 4338620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 7089098 - 7089148
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||| ||||||||||||||  ||||||||||| ||||||| |||||||    
T  7089098 cataagttatttccttatgcaccgtgcataaacacatcacaatcatcagat 7089148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 16968081 - 16968035
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttca 308  Q
    ||||||| |||||| ||||| ||||||||| ||||||||||||||||    
T  16968081 ttattatgcataagccattttcttatgcaccctgcataaacacttca 16968035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 31216678 - 31216728
Alignment:
Q  270 cataagtcatttccttatgcacactgcataaacacttcacaattatcagat 320  Q
    ||||||||||||||||||||||  ||||||||||| ||||||  |||||||    
T  31216678 cataagtcatttccttatgcaccgtgcataaacacatcacaaccatcagat 31216728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 308
Target Start/End: Original strand, 450203 - 450256
Alignment:
Q  255 gcaaaaattattatacataagtcatttccttatgcacactgcataaacacttca 308  Q
    |||||| ||||||| |||||||||||||||||| |||  |||||||||||||||    
T  450203 gcaaaagttattatgcataagtcatttccttatacaccttgcataaacacttca 450256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 7400 - 7351
Alignment:
Q  262 ttattatacataagtcatttccttatgcacactgcataaacacttcacaa 311  Q
    ||||||| ||||| |||  ||||||||||| |||||||||||||||||||    
T  7400 ttattatgcataaatcagatccttatgcaccctgcataaacacttcacaa 7351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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