View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18234_high_24 (Length: 251)
Name: NF18234_high_24
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 8 - 234
Target Start/End: Original strand, 9436393 - 9436621
Alignment:
| Q |
8 |
cgaagaaaatgctagcttgcctcttgtaaaaggaagcattcctctggtggaaaacnnnnnnnnctca--gacctttcaaagaacccataatttggtctta |
105 |
Q |
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| T |
9436393 |
cgaagaaaatgctagcttgcctcttgtaaaaggaagcattcctctggtggaaaacaaaaaaaactcatagacctttcaaagaacccataatttggtctta |
9436492 |
T |
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| Q |
106 |
aataagtgaacacgcaaagatttgtgaagtttcaaagatgcatcttcgtctgttatttaaacatctttacctaaattaatacggcttcatctgcttgaca |
205 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
9436493 |
aataagtgaacacgaaaagatttgtgaagtttcaaagatgcatcttcttctgttatttaaacttctttacctaaattaatatggcttcatctgcttgaca |
9436592 |
T |
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| Q |
206 |
caaacaacgtatcatctggtcatgagtca |
234 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
9436593 |
caaacaacgtatcatctggtcatgagtca |
9436621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 9389794 - 9389933
Alignment:
| Q |
8 |
cgaagaaaatgctagcttgcctcttgtaaaa-ggaagcattcctctggtggaaaacnnnnnnnnctca--gacctttcaaagaacccataatttggtctt |
104 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||||||||||||| || |||| ||| |||||||||||||||||||||||||| |
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| T |
9389794 |
cgaagaaaatgctagcttgcctctagtaaaaaggaagcattcctctggtggaacacaaaaaag-ctcatagacttttcaaagaacccataatttggtctt |
9389892 |
T |
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| Q |
105 |
aaataagtgaacacgcaaagatttgtgaagtttcaaagatg |
145 |
Q |
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||| |||||||||| | |||||||||||||||||||||||| |
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| T |
9389893 |
aaaaaagtgaacactcgaagatttgtgaagtttcaaagatg |
9389933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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