View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18234_high_3 (Length: 559)
Name: NF18234_high_3
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 177 - 549
Target Start/End: Original strand, 46628736 - 46629112
Alignment:
| Q |
177 |
ataaattattgatattatatattcaactaaggtccaagactcaggaaacatatttgctgctgttaccgacatttaccacatatatgtactatttaacata |
276 |
Q |
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| T |
46628736 |
ataaattattgatattatatattcaactaaggtccaagactcaggaaacatatttgctgctgttaccgacatttaccacatatatgtactatttaacata |
46628835 |
T |
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| Q |
277 |
tggtttagagtgatttgcaaataacttgtacaattttacagaattaagggtatacatcatagagaaggcaatgaggaaaattccaaaggtggtgtttcct |
376 |
Q |
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| T |
46628836 |
tggtttagagtgatttgcaaataacttgtacaattttacagaattaagggtatacatcatagagaaggcaatgaggaaaattccaaaggtggtgtttcct |
46628935 |
T |
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| Q |
377 |
ccaacagaacaccttgtaaaatgggggagc--atatgtaaacatgccatgtgattgccaactagtggtttgtatatgaaaatatatccttcagatcaaaa |
474 |
Q |
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| T |
46628936 |
ccaacagaacaccttgtaaaatgggggagcatatatgtaaacatgccatgtgattgccaactagtggtttgtatatgaaaatatatccttcagatcaaaa |
46629035 |
T |
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| Q |
475 |
caaatatgcaaattaattacttactctat--tatgaataagatgggcctatagctattaatttgatgtatacctatg |
549 |
Q |
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| T |
46629036 |
caaatatgcaaattaattacttactctattatatgaataagatgggcctatagctattaatttgatgtatacctatg |
46629112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 46628552 - 46628697
Alignment:
| Q |
18 |
gtaccatataagaactttccaagaaaatgcatcatcactggcccatcttatattacatgcttttggacttttgggttggattcgttgaatgattgctata |
117 |
Q |
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| T |
46628552 |
gtaccatataagaactttccaagaaaatgcatcatcactggcccatcttatattacatgcttttggacttttgggttggattcgttgaatgattgctata |
46628651 |
T |
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| Q |
118 |
ctagtttttaaccatagaatagaagcaaatttttcatcaaatattg |
163 |
Q |
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| T |
46628652 |
ctagtttttaaccatagaatagaagcaaatttttcatcaaatattg |
46628697 |
T |
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