View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18234_high_34 (Length: 219)
Name: NF18234_high_34
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 5690007 - 5689804
Alignment:
| Q |
1 |
tgaaggtgttaagggtcaagtgatgttgcatcaaattgttttttcattcaagattttctatacattttatttgagaggtattaaggatttgccacaagag |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5690007 |
tgaaggtgttaagggtcaagtgaagttgcatcaaattgtttttccattcaagattttctatacattttatttgagaggtattaaggatttgccacaagag |
5689908 |
T |
|
| Q |
101 |
cttcttggtaagcatgttgagccttctactgctgttgaagcttctcctgctgctaaggctcttgagcctcatgctgtcattgctggttttaccaattagt |
200 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5689907 |
cttcttggtaaacatgttgagccttctcctgctgttgaagcttctcctgctgctaaagctcttgagcctcatgctgtcattgctggttttacaaattagt |
5689808 |
T |
|
| Q |
201 |
taat |
204 |
Q |
| |
|
|||| |
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|
| T |
5689807 |
taat |
5689804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 25914691 - 25914500
Alignment:
| Q |
1 |
tgaaggtgttaagggtcaagtgatgttgcatcaaattgttttttcattcaagattttctatacattttatttgagaggtattaaggatttgccacaagag |
100 |
Q |
| |
|
||||||||||| || ||||||| | | |||||||||||||| |||| ||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
25914691 |
tgaaggtgttacaggccaagtgaagctcaatcaaattgtttttccatttaagattttctacacattttatttgaagggtattaaggatttgccacaagag |
25914592 |
T |
|
| Q |
101 |
cttcttggtaagcatgttgagccttctactgctgttgaagcttctcctgctgctaaggctcttgagcctcatgctgtcattgctggttttac |
192 |
Q |
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||||||||||| | ||||||||| || |||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| |
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| T |
25914591 |
cttcttggtaaaccagttgagcctaaccctaatgttgaagcttctcctgctgctaaagctcttgagccacatgctaccattgctggttttac |
25914500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 6792680 - 6792803
Alignment:
| Q |
1 |
tgaaggtgttaagggtcaagtgatgttgcatcaaattgttttttcattcaagattttctatacattttatttgagaggtattaaggatttgccacaagag |
100 |
Q |
| |
|
|||||||||| | |||||||| | | | ||||||||||| ||| |||| ||||| || || ||||||||| | | |||||||||||||||||||| ||| |
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| T |
6792680 |
tgaaggtgtttatggtcaagttaagcttcatcaaattgtgtttccatttaagatattttacacattttatcttaagggtattaaggatttgccacatgag |
6792779 |
T |
|
| Q |
101 |
cttcttggtaagcatgttgagcct |
124 |
Q |
| |
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|||||| ||| | | |||||||| |
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|
| T |
6792780 |
tttcttgttaatcctattgagcct |
6792803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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