View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18234_high_35 (Length: 205)
Name: NF18234_high_35
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 5689943 - 5690103
Alignment:
| Q |
22 |
atgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagt |
121 |
Q |
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| T |
5689943 |
atgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagt |
5690042 |
T |
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| Q |
122 |
gtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctccaaaatgg |
182 |
Q |
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| T |
5690043 |
gtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatcaccaaaatgg |
5690103 |
T |
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Target: chr4 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 22 - 177
Target Start/End: Original strand, 25914627 - 25914779
Alignment:
| Q |
22 |
atgtatagaaaatcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagt |
121 |
Q |
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| T |
25914627 |
atgtgtagaaaatcttaaatggaaaaacaatttgattgagcttcacttggcctgtaacaccttcaaaaattccagtaccaccagtcacagttagatatgt |
25914726 |
T |
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| Q |
122 |
gtcctcaggataggttaaatatggtccttgaactgctaagtgaccataatctccaa |
177 |
Q |
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| T |
25914727 |
gtcctc---ataggttaggtaaggtccttgcacagctatttgaccatagtctccaa |
25914779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 6792733 - 6792639
Alignment:
| Q |
33 |
atcttgaatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattccagaaccaccagtcacagctagataagtgtcctc |
127 |
Q |
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| T |
6792733 |
atcttaaatggaaacacaatttgatgaagcttaacttgaccataaacaccttcaaatattccagttccaccagtcacagccaaataagtatcctc |
6792639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 6800198 - 6800131
Alignment:
| Q |
39 |
aatggaaaaacaatttgatgcaacttcacttgacccttaacaccttcaaatattccagaaccaccagt |
106 |
Q |
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| T |
6800198 |
aatggaaacacaatttgatgaagcttaacttgaccataaacaccttcaaatattccagttccaccagt |
6800131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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