View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18234_high_5 (Length: 507)
Name: NF18234_high_5
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 24 - 489
Target Start/End: Complemental strand, 8730521 - 8730056
Alignment:
| Q |
24 |
tacaacccggcaaacaagagtaagacaacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattatgaagaggcaaccacaataaataca |
123 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
8730521 |
tacaacccgacaaacaagagcaagacaacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattataaagaggcaaccacaataaatata |
8730422 |
T |
|
| Q |
124 |
cccaccaaccaacgatagagacagaactacaccgccaaaccgtctcacatgaaaacaaggagcaacataaatagaaccagaggaggacgaagcccaacnn |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| | ||||||| ||||||| |||||||| ||||||||| ||| |
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|
| T |
8730421 |
cccaccaaccaacgatagagacagaactacactgccaaactgtctcacatgaaaacaggcagcaacaaaaatagatccagaggaagacgaagccaaacaa |
8730322 |
T |
|
| Q |
224 |
nnnnncatgggcagcgatgccagtctgaagtgaaagacgtaacctagatcgtaaaaaggtgatcgccagtaacacggaaaaggcgtccgtccccagagta |
323 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
8730321 |
caaaacacgggcagcgacgccagtctgaagtgaaagacgtaacctagatcgtaaaaaggtgatcgccagtaacacgaaaaaggcgtttgtccccagagta |
8730222 |
T |
|
| Q |
324 |
aacaacaaccaagccagaagcgatctgtacccaaggttaatgagcatgtagaaaataatgaaaatcattttcatggtgttgacagcgtgaagaacaccat |
423 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
8730221 |
aacaccaaccaagccagaagtgatctgtacccaaggttaaagagcatgtagaaaataatgaaaatcattttcatggtgttgacaacgtgaagaacaccat |
8730122 |
T |
|
| Q |
424 |
aaccaacagatgtcatgatagtgagggacnnnnnnnttgctgaaataaatctaatccaaggcttat |
489 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
8730121 |
aaccaacagatgtcatgatagtgagggacaaaaaaattgctgaaataaatctaatccaaggcttat |
8730056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 171
Target Start/End: Original strand, 39184668 - 39184794
Alignment:
| Q |
45 |
aagacaacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattatgaagaggcaaccacaataaatacacccaccaaccaacgatagaga |
144 |
Q |
| |
|
||||||||||||||||||| || ||||| |||| | ||| |||||||||||| ||||| ||| |||| | |||| |||||| | |||||||||||| |
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|
| T |
39184668 |
aagacaacaaagttgaaagacttcaaggaaagcggccacaacgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagc |
39184767 |
T |
|
| Q |
145 |
cagaactacaccgccaaaccgtctcac |
171 |
Q |
| |
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|| |||||| ||||||||||| ||||| |
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|
| T |
39184768 |
caaaactacgccgccaaaccgcctcac |
39184794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 24 - 489
Target Start/End: Original strand, 25505386 - 25505851
Alignment:
| Q |
24 |
tacaacccggcaaacaagagtaagacaacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattatgaagaggcaaccacaataaataca |
123 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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|
| T |
25505386 |
tacaacccgacaaacaagagcaagacaacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattataaagaggcaaccacaataaatata |
25505485 |
T |
|
| Q |
124 |
cccaccaaccaacgatagagacagaactacaccgccaaaccgtctcacatgaaaacaaggagcaacataaatagaaccagaggaggacgaagcccaacnn |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| | ||||||| ||||||| |||||||| ||||||||| ||| |
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|
| T |
25505486 |
cccaccaaccaacgatagagacagaactacactgccaaactgtctcacatgaaaacaggcagcaacaaaaatagatccagaggaagacgaagccaaacaa |
25505585 |
T |
|
| Q |
224 |
nnnnncatgggcagcgatgccagtctgaagtgaaagacgtaacctagatcgtaaaaaggtgatcgccagtaacacggaaaaggcgtccgtccccagagta |
323 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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|
| T |
25505586 |
caaaacacgggcagcgacgccagtctgaagtgaaagacgtaacctagatcgtaaaaaggtgatcgccagtaacacgaaaaaggcgtttgtccccagagta |
25505685 |
T |
|
| Q |
324 |
aacaacaaccaagccagaagcgatctgtacccaaggttaatgagcatgtagaaaataatgaaaatcattttcatggtgttgacagcgtgaagaacaccat |
423 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
25505686 |
aacaccaaccaagccagaagtgatctgtacccaaggttaaagagcatgtagaaaataatgaaaatcattttcatggtgttgacaacgtgaagaacaccat |
25505785 |
T |
|
| Q |
424 |
aaccaacagatgtcatgatagtgagggacnnnnnnnttgctgaaataaatctaatccaaggcttat |
489 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25505786 |
aaccaacagatgtcatgatagtgagggacaaaaaaattgctgaaataaatctaatccaaggcttat |
25505851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 354 - 480
Target Start/End: Original strand, 657382 - 657508
Alignment:
| Q |
354 |
ccaaggttaatgagcatgtagaaaataatgaaaatcattttcatggtgttgacagcgtgaagaacaccataaccaacagatgtcatgatagtgagggacn |
453 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||| ||||||| |||||| |||| |
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|
| T |
657382 |
ccaaggttgaagagcatgtagaaaataatgaaaatcatttccatggtgttgacagcatgaagatcaccataaccaacagttgtcatggtagtgatggacc |
657481 |
T |
|
| Q |
454 |
nnnnnnttgctgaaataaatctaatcc |
480 |
Q |
| |
|
||||||||||| ||||||||| |
|
|
| T |
657482 |
aataaattgctgaaatatatctaatcc |
657508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 149
Target Start/End: Original strand, 22885900 - 22886012
Alignment:
| Q |
37 |
acaagagtaagacaacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattatgaagaggcaaccacaataaatacacccaccaaccaac |
136 |
Q |
| |
|
||||||| |||||||||| ||||||||||| |||| ||||| ||||||||| ||||||| ||||| ||| |||||| |||| |||||| ||| | |
|
|
| T |
22885900 |
acaagagcaagacaacaagattgaaagtctctaaggaaagcaggaacatcgccttagcatttcgaagaagcagccacaacgaatatacccacaaactagt |
22885999 |
T |
|
| Q |
137 |
gatagagacagaa |
149 |
Q |
| |
|
|||||||| |||| |
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|
| T |
22886000 |
gatagagatagaa |
22886012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 17033098 - 17032948
Alignment:
| Q |
45 |
aagacaacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattatgaagaggcaaccacaataaatacacccaccaaccaacgatagaga |
144 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| ||||| ||| |||| | |||| |||||| || || ||||||||| |
|
|
| T |
17033098 |
aagacaacaaagttgaaggtctctaaggaaagcagccacatcgccatagcattccgaagaagcagccacgttgaataaacccacaaatcagcgatagaga |
17032999 |
T |
|
| Q |
145 |
c-agaactacaccgccaaaccgtctca-catgaaaacaaggagcaacataa |
193 |
Q |
| |
|
| | |||||||| |||||||||||||| || ||||||||| |||||||||| |
|
|
| T |
17032998 |
caaaaactacactgccaaaccgtctcaccaagaaaacaagcagcaacataa |
17032948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 42373752 - 42373640
Alignment:
| Q |
51 |
acaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattatgaagaggcaaccacaataaatacacccaccaaccaacgatagagacagaac |
150 |
Q |
| |
|
||||||||||| |||||||||| || || |||||||||||||||||| ||||| ||| ||||| | |||| ||||| ||||||| |||||||||| ||| |
|
|
| T |
42373752 |
acaaagttgaaggtctccaaggaaatcagcaacatcgccatagcattccgaagaagcagccacagtgaatataccca-caaccaaagatagagacaaaac |
42373654 |
T |
|
| Q |
151 |
tacaccgccaaacc |
164 |
Q |
| |
|
||| ||| |||||| |
|
|
| T |
42373653 |
tacgccgtcaaacc |
42373640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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