View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18234_high_7 (Length: 479)

Name: NF18234_high_7
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18234_high_7
NF18234_high_7
[»] chr4 (1 HSPs)
chr4 (230-435)||(28859792-28860000)
[»] scaffold0303 (2 HSPs)
scaffold0303 (230-435)||(13199-13407)
scaffold0303 (437-470)||(13445-13478)
[»] chr6 (3 HSPs)
chr6 (230-435)||(17753183-17753391)
chr6 (312-435)||(22738657-22738783)
chr6 (437-470)||(17753112-17753145)
[»] chr1 (5 HSPs)
chr1 (230-435)||(18118943-18119151)
chr1 (235-435)||(10770224-10770427)
chr1 (19-89)||(40900593-40900663)
chr1 (437-470)||(10770465-10770498)
chr1 (437-470)||(18119189-18119222)
[»] chr5 (1 HSPs)
chr5 (244-386)||(27492280-27492425)


Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 230 - 435
Target Start/End: Original strand, 28859792 - 28860000
Alignment:
Q  230 aagctgaaaaacagggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcgcaggccaggaaattggtc 329  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  28859792 aagctgaaaaacacggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcgcaggcggggaaattggtc 28859891  T
Q  330 tggaatttggagactcaaagtcccaccaaaagt---gaacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacatgatagaggg 426  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28859892 tggaatttggagactcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacatgataaaggg 28859991  T
Q  427 gttcattgt 435  Q
    |||||||||    
T  28859992 gttcattgt 28860000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 230 - 435
Target Start/End: Original strand, 13199 - 13407
Alignment:
Q  230 aagctgaaaaacagggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcgcaggccaggaaattggtc 329  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13199 aagctgaaaaacacggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcgcaggccgggaaattggtc 13298  T
Q  330 tggaatttggagactcaaagtcccaccaaaagt---gaacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacatgatagaggg 426  Q
    | ||||||||||| |||||||||||||||||||   ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||    
T  13299 tagaatttggagattcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcaatgtgttttgcccacccggattagactacatgataaaggg 13398  T
Q  427 gttcattgt 435  Q
    |||||||||    
T  13399 gttcattgt 13407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 470
Target Start/End: Original strand, 13445 - 13478
Alignment:
Q  437 attttgctcacctgttcttttcatgtccctttgc 470  Q
    |||||||||||||||||||||||| |||||||||    
T  13445 attttgctcacctgttcttttcatatccctttgc 13478  T

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Target: chr6 (Bit Score: 163; Significance: 7e-87; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 230 - 435
Target Start/End: Complemental strand, 17753391 - 17753183
Alignment:
Q  230 aagctgaaaaacagggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcgcaggccaggaaattggtc 329  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||     
T  17753391 aagctgaaaaacacggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcacaggccgagaaattggtt 17753292  T
Q  330 tggaatttggagactcaaagtcccaccaaaagtg---aacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacatgatagaggg 426  Q
    ||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||    
T  17753291 tggaatttggagactcaaagtcccaccaaaagtgaaaaacttggtttggcgtatgtgtcgaggtgttttgcccacccagattagaccacatgataaaggg 17753192  T
Q  427 gttcattgt 435  Q
    |||||||||    
T  17753191 gttcattgt 17753183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 312 - 435
Target Start/End: Complemental strand, 22738783 - 22738657
Alignment:
Q  312 caggccaggaaattggtctggaatttggagactcaaagtcccaccaaaagtgaa---cttggtttggcgtatgtgtcgaggtgttttgcccacccggatt 408  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  22738783 caggccaggcaattggtctggaatttggagactcaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgcccacccggatt 22738684  T
Q  409 agactacatgatagaggggttcattgt 435  Q
    ||||||||||||| |||||||||||||    
T  22738683 agactacatgataaaggggttcattgt 22738657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 470
Target Start/End: Complemental strand, 17753145 - 17753112
Alignment:
Q  437 attttgctcacctgttcttttcatgtccctttgc 470  Q
    |||||||||||||||||||||||||| |||||||    
T  17753145 attttgctcacctgttcttttcatgtacctttgc 17753112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 230 - 435
Target Start/End: Original strand, 18118943 - 18119151
Alignment:
Q  230 aagctgaaaaacagggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcgcaggccaggaaattggtc 329  Q
    |||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| |||||||||||    
T  18118943 aagctgaaaaacacagtcattactcggttcgtagtgcttacctgttatgtgtgaacgaactcattgatgtgtcacatcttcacgggccgggaaattggtc 18119042  T
Q  330 tggaatttggagactcaaagtcccaccaaaagt---gaacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacatgatagaggg 426  Q
    ||||||||||||||| |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  18119043 tggaatttggagacttaaagtcccaccaaaagtgaagaacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacattataaaggg 18119142  T
Q  427 gttcattgt 435  Q
    |||| ||||    
T  18119143 gttcgttgt 18119151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 235 - 435
Target Start/End: Original strand, 10770224 - 10770427
Alignment:
Q  235 gaaaaacagggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcgcaggccaggaaattggtctggaa 334  Q
    ||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| | || |||||||||||||    
T  10770224 gaaaaacactgtcattactcggttcgtagtgcttatcggttatgtgtgaacgaactcattgacgtgtcacatcttcgcaggtcgggcaattggtctggaa 10770323  T
Q  335 tttggagactcaaagtcccaccaaaagt---gaacttggtttggcgtatgtgtcgaggtgttttgcccacccggattagactacatgatagaggggttca 431  Q
    |||||||||||||||| |||||||||||   |||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||    
T  10770324 tttggagactcaaagttccaccaaaagtgaagaacttggtttggcatatgtgtcgaggtttttcgcccacccggattagactacatgataaaggggttca 10770423  T
Q  432 ttgt 435  Q
    ||||    
T  10770424 ttgt 10770427  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 40900593 - 40900663
Alignment:
Q  19 cagagtgcaagatttaaaaaacggtctgttaccgcaaaaatggccgagacaaaatagtataggtcgttcct 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40900593 cagagtgcaagatttaaaaaacggtctgttaccgcaaaaatggccgagacaaaatagtataggtcgttcct 40900663  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 470
Target Start/End: Original strand, 10770465 - 10770498
Alignment:
Q  437 attttgctcacctgttcttttcatgtccctttgc 470  Q
    |||||||||| |||||||||||||||||||||||    
T  10770465 attttgctcatctgttcttttcatgtccctttgc 10770498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 470
Target Start/End: Original strand, 18119189 - 18119222
Alignment:
Q  437 attttgctcacctgttcttttcatgtccctttgc 470  Q
    |||||||||||||||||||||||| |||||||||    
T  18119189 attttgctcacctgttcttttcatttccctttgc 18119222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 244 - 386
Target Start/End: Original strand, 27492280 - 27492425
Alignment:
Q  244 ggtcattactcggttcgtagtgcttaccggttatgtgtgaacgaactcattgatgtgtcacatcttcgcaggccaggaaattggtctggaatttggagac 343  Q
    |||||||| |||||||||||||||||||| |||||||||| ||||||||| ||  | || |||||||| ||||| ||  ||||||||| |||||||||||    
T  27492280 ggtcattattcggttcgtagtgcttaccgtttatgtgtgagcgaactcatcgacttatcccatcttcgtaggccgggctattggtctgaaatttggagac 27492379  T
Q  344 tcaaagtcccaccaaaagt---gaacttggtttggcgtatgtgtcg 386  Q
    | ||||||||||| || ||   ||||||||||||||| ||||||||    
T  27492380 ttaaagtcccacccaaggtgaagaacttggtttggcgaatgtgtcg 27492425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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