View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18234_low_10 (Length: 468)
Name: NF18234_low_10
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 461
Target Start/End: Original strand, 297927 - 298365
Alignment:
| Q |
14 |
caacaacaaccttcgcaatcgcaggcactagcatatataattagcatgaggactaataataagtaaaaatcaattcattgtttcattcattatggtggtg |
113 |
Q |
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| T |
297927 |
caacaacaaccttcgcaatcgcaggcactagcatatataattatcatgaggactaataataagtaaaaatcaattcattgtttcattcattatggtggtg |
298026 |
T |
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| Q |
114 |
ggtgactatcatatttaactgtatattctatatgtataattcnnnnnnncttgccaagttgcttgaggatcatttaatcaatacaagtcttttaagggat |
213 |
Q |
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| T |
298027 |
ggtgactatcatatttaactgtatattctatatgtataattctttttttcttgcccagttgcttgaggatcatttaatcaata----tc-tttaagggat |
298121 |
T |
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| Q |
214 |
ttgaatagaaaaaatatttttagtgataacaaaacttttctcaaaatatttgattttgatttcttggttccagaagttctccatggtgattgcaactcta |
313 |
Q |
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| T |
298122 |
ttgaatagaaaaaatatttttagtgataacaaaacttttctcaaaatatttgattttgatttcttggttccagaagttctccatggtgattgcaactcta |
298221 |
T |
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| Q |
314 |
tagtgattcctttatttatttannnnnnncaatctgatttacttctagtaccggtattattgtacactctgttattgatggttagtgaagatgatattga |
413 |
Q |
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| T |
298222 |
tagtgattcctttttttatttatttttttcaatc----tcacttctagtaccggtcttattgtacactctgttattgatagttagtgaagatgatattga |
298317 |
T |
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| Q |
414 |
tgagattgtgttcagaaacatgtcattatgactacttatgttcttctc |
461 |
Q |
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| T |
298318 |
tgagattgtgttcagaaacatgtcattatgactacttatgttcttctc |
298365 |
T |
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