View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18234_low_11 (Length: 448)
Name: NF18234_low_11
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 215 - 438
Target Start/End: Original strand, 29603556 - 29603779
Alignment:
| Q |
215 |
aatgaaaaactcagcactgcgccactctccaaaaaacctatttgatatgcttttcttaccactattccattgtgtccttaaataattaaatacatcgcta |
314 |
Q |
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| T |
29603556 |
aatgaaaaactcagcactgtgccactctccaaaaaacctatttgatatgcttttcttaccactattccattgtgtctttaaataattaaatacatcgcta |
29603655 |
T |
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| Q |
315 |
ctatttcagagatagttccatatataatgaaggaaaaagcttagatgaatctcccatgcaaggttttcaaaaaagggatacacaaccacagtttaggttg |
414 |
Q |
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| T |
29603656 |
atatttcagagatagttccatatataatgaaggaaaaagcttagatgaatctcgcatgcaaggttttcaaaaaagggatacacaaccacagtttaggttg |
29603755 |
T |
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| Q |
415 |
caaaatgaaggaatttcgtctctg |
438 |
Q |
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| T |
29603756 |
caaaatgaaggaatttcgtgtctg |
29603779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 29603383 - 29603569
Alignment:
| Q |
6 |
acatcgaacacaacactaacgggaaaaaactaaggaacatatgaggcaggcagatttttgctttctgacaactctaattgcaaatcaactattgtaagga |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29603383 |
acatcgaacacaacactaacgggaaaaaactaaggaacatatgaggcaggcagatttttgctttctgacaactctaattgcaaatcaactattgtaagga |
29603482 |
T |
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| Q |
106 |
tgggaagagttttatagaaaataaatgaaaccattaacttcaaacacaataaaagagaaatcataaagtatgaaatgaaaaactcag |
192 |
Q |
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| T |
29603483 |
tgggaagagttttatagaaaataaatgaaaccattaacttcaaacacaataaaagagaaatcataaagtatgaaatgaaaaactcag |
29603569 |
T |
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