View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18234_low_13 (Length: 422)
Name: NF18234_low_13
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 16913061 - 16913451
Alignment:
| Q |
17 |
cacagacagtgtaaaggttgagaaggcattacttgtttttggatcgagtgtaaatttgatatctctctattattaagggtggttacctgaagctaaaacc |
116 |
Q |
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| T |
16913061 |
cacagacagtgtaaaggttgagaaggcattacttgtttttggatcgagtataaatttgatacctctctattattaagggtggttacctgaagctaaaacc |
16913160 |
T |
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| Q |
117 |
tctatatatgtaatttgatgacctatccttcagacgtctttgttgcatgattaaggaagttcacaccaacgcatatatgttaaagtttaagcaggactaa |
216 |
Q |
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| T |
16913161 |
tctatatatgtaatctgatgacctatccttcagacgtctttgttgcatgattaaggaagttcacaccaacgcatatatgttaaagtttaagcaggactaa |
16913260 |
T |
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| Q |
217 |
gtgatggacttgaagaatgatgatacatctactctaatactagacaaaaccttcagccaaagtgcgatttatatatgaatatataacacaaaatatttta |
316 |
Q |
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| T |
16913261 |
gtgatggacttgaagaatgatgatacatctactctaatactagacaaaaccttcagccaaagtgtgatttatatatga--atataacataaaatatttta |
16913358 |
T |
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| Q |
317 |
taatgagtgtataagaaaacgtattatcaaacaacgaagttaggttcagtggaaagggataacttccacaacgtggtgaacaatgttcaaatt |
409 |
Q |
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| T |
16913359 |
taatgagtgtataagaaaacgtattatcaaacaacgaagttaggtttagtggaaagggataacttccacaacttggtgaacaatgttcaaatt |
16913451 |
T |
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