View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18234_low_15 (Length: 353)

Name: NF18234_low_15
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18234_low_15
NF18234_low_15
[»] chr8 (1 HSPs)
chr8 (1-339)||(27832105-27832443)


Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 27832443 - 27832105
Alignment:
Q  1 ttaatttgatggaattatttcaaagatatttctcaattgatgtaagttttttccatnnnnnnnnnnnnnnnnnntaccaagattgtaagtgcgcgttccc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||| |||||||    
T  27832443 ttaatttgatggaattatttcaaagatatttctcaattgatgtaagttttttccataaaaagaaagaaaaaaaataccaagattgtaagtgcacgttccc 27832344  T
Q  101 ttcaatagttaggatagactgaatttgatttgttgtaaaactaagtttattagaattgaatctatgagaatcgctaaaagtttatagcatctaaaccgaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27832343 ttcaatagttaggatagactgaatttgatttgttgtaaaactaagtttattagaattgaatctatgagaatcgctaaaagtttatagcatctaaaccgaa 27832244  T
Q  201 gtaaaataaacatatgcataaaaaaccttcaaaacttcatgttttttcagttcttgtctatattgattccactaatcaccatattatgttgaatgaatca 300  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27832243 gtaaaataaacctatgcataaaaaaccttcaaaacttcatgttttttcagtttttgtctatattgattccactaatcaccatattatgttgaatgaatca 27832144  T
Q  301 tcagttccaaattgttttaaaaactttctagtgtctgtg 339  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  27832143 tcagttccaaattgttttaaaaactttctagtgtgtgtg 27832105  T

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