View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18234_low_16 (Length: 353)
Name: NF18234_low_16
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 15322637 - 15322767
Alignment:
| Q |
78 |
ttacacgtccaattaaattcaagtattgtgtaatgtgatcaaatggatttgatgagagtagtgt--ccctattattttacaaaaagtgtaagtattgtta |
175 |
Q |
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| T |
15322637 |
ttacacgtccaattaaattcaagtattgtgtaatgtgatcaaatggatttgatgagagtagtgtaaccctattattttacaacaagtgtaagtattgtta |
15322736 |
T |
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| Q |
176 |
atattatgttgagggtagatatcaagtttta |
206 |
Q |
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| T |
15322737 |
atattatgttgagggtagatattaagtttta |
15322767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 236 - 353
Target Start/End: Original strand, 15322761 - 15322878
Alignment:
| Q |
236 |
agttttaaatctcttagtaataagatctattttctttttagttaattgatattttcattgtcctaattatatgatcagnnnnnnnnnccttcctattttt |
335 |
Q |
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| T |
15322761 |
agttttaaatctctcagtaatgagatctattttcttcttagttaattgatattttcattatcctaattatatgatcagtttttttttccttcctattttt |
15322860 |
T |
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| Q |
336 |
gtgattatattctttcta |
353 |
Q |
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| T |
15322861 |
gtgattatattctttcta |
15322878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 15322555 - 15322614
Alignment:
| Q |
19 |
acaaaaatggtagaagaggatccaaacccgtcttttatcatgaatgaataattttttgtt |
78 |
Q |
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| T |
15322555 |
acaaaaatggtagaagaggatctaaacccgtcttttatcatgaatgaataattttttgtt |
15322614 |
T |
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