View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18234_low_17 (Length: 341)
Name: NF18234_low_17
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_low_17 |
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| [»] scaffold1515 (1 HSPs) |
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| [»] scaffold1889 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 24 - 325
Target Start/End: Original strand, 14408428 - 14408729
Alignment:
| Q |
24 |
ttataatcgaaagatccaaagattgaattcnnnnnnncacataataaaagaatgaaactcgaaatacaaaccatcacgagcgttggagtagttaacatag |
123 |
Q |
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| T |
14408428 |
ttataatccaaagatccaaagattgaattaaaaaaaacacataataaaagaatgaaactcgaaatacaaaccatcacgagcgttggagtagttaacatag |
14408527 |
T |
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| Q |
124 |
ccatatccaagagatgactgcgtcatctgatctctgcaaaccctaacagaaatcacaggggcaatctggctgaacagatcatacagctgcgcatcattta |
223 |
Q |
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| T |
14408528 |
ccataaccaagagatgactgcgtcatctgatctctgcaaaccctaacagaaatcacaggggcaatctggctgaacagatcatacagctgcgcatcattta |
14408627 |
T |
|
| Q |
224 |
cgttcccttgaagatcaccgacgtacaaagaagaattctcaaatcttccagcactggtcaaagctgctggaacaacgatcgttggagatgaaattattgc |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||| |
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| T |
14408628 |
cgttcccttgaagatcaccgacgtacaaagaagaattctcaaatcttccagcactggtcaaagctgctggaacaacgatctttggtgatgaaactattgc |
14408727 |
T |
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| Q |
324 |
tg |
325 |
Q |
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|| |
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| T |
14408728 |
tg |
14408729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1515 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold1515
Description:
Target: scaffold1515; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 132 - 316
Target Start/End: Original strand, 1 - 185
Alignment:
| Q |
132 |
aagagatgactgcgtcatctgatctctgcaaaccctaacagaaatcacaggggcaatctggctgaacagatcatacagctgcgcatcatttacgttccct |
231 |
Q |
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| T |
1 |
aagagatgactgcgtcatctgatcccggcaaaccctagcagaaagcactggtgcaatctgactgaacagatcataaagctggccctcattgacgttcctt |
100 |
T |
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| Q |
232 |
tgaagatcaccgacgtacaaagaagaattctcaaatcttccagcactggtcaaagctgctggaacaacgatcgttggagatgaaa |
316 |
Q |
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| T |
101 |
tcgagatcaccaacgtataaggaagcggtctcaaatcttccagtaccggtcaaagctgctggaacaacgatctttggtgatgaaa |
185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1889 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold1889
Description:
Target: scaffold1889; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 66 - 266
Target Start/End: Complemental strand, 1045 - 845
Alignment:
| Q |
66 |
aataaaagaatgaaactcgaaatacaaaccatcacgagcgttggagtagttaacatagccatatccaagagatgactgcgtcatctgatctctgcaaacc |
165 |
Q |
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|||||||||| ||| || ||| || |||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| || |||||| |
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| T |
1045 |
aataaaagaaccaaaatcaaaacacgaaccatcacgagcgttggagaagttgacatagccataaccaagagatgactgcgtcatctgatccctacaaacc |
946 |
T |
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| Q |
166 |
ctaacagaaatcacaggggcaatctggctgaacagatcatacagctgcgcatcatttacgttcccttgaagatcaccgacgtacaaagaagaattctcaa |
265 |
Q |
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|| || ||||| || || ||||||| || | ||||| ||||| || ||||| || |||| || ||||||||| |||||||| |||| |||||||| |
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| T |
945 |
ctgacggaaataacgtggccaatctgatagagaggttcataaagctgggcctcattcaccttcctttcaagatcaccaacgtacaatgaagcattctcaa |
846 |
T |
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| Q |
266 |
a |
266 |
Q |
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| |
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| T |
845 |
a |
845 |
T |
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