View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18234_low_18 (Length: 326)
Name: NF18234_low_18
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 44946602 - 44946322
Alignment:
| Q |
16 |
attcaaatgtttcagtagaaaaatatggaaataccatgaaacttactttatcatctacttatgtgttcatcgttctgtgatgttagaacgataaaagggg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44946602 |
attcaaatgtttcagtagaaaaatatggaaataccatgaaacttactttatcatctacttatgtgttcatcgttctgtgatgttagaacgataaaagggg |
44946503 |
T |
|
| Q |
116 |
ctgattaagcttctgctgctgcccatacactgagcctacggagagatcaagataatgaggtcacggtaaacatcaagaannnnnnncttttgccatacac |
215 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44946502 |
ctgattaagcttctg----------tacactgagcctacggagagatcaagataattaggtcacggtaaacatcaagaatttttttcttttgccatacac |
44946413 |
T |
|
| Q |
216 |
attggagttggagcatgacaataacaaaatttcaataaaagacaacatcataagcctaattttgcactaaccagcacagttttaacaagca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44946412 |
attggagttggagcatgacaataacaaaatttcaataaaagacaacatcataagcctaattgtgcactaaccagcacagttttaacaagca |
44946322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 194
Target Start/End: Complemental strand, 51568485 - 51568379
Alignment:
| Q |
91 |
tgtgatgttagaacgataaaaggggctgattaagcttctgctgctgcccatacactgag--cctac-ggagagatcaagataatgaggtcacggtaaaca |
187 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||| |||||||||||| | |||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
51568485 |
tgtgatgttagaacgatagaaggggctgaataagcttctgctgcagcccatacactgtgaacctataggagagatgaagataatgaggtcacgataaaca |
51568386 |
T |
|
| Q |
188 |
tcaagaa |
194 |
Q |
| |
|
||||||| |
|
|
| T |
51568385 |
tcaagaa |
51568379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 51568620 - 51568547
Alignment:
| Q |
9 |
gaagaatattcaaatgtttcagtagaaaaatatggaaataccatgaaacttactttatcatctacttatgtgtt |
82 |
Q |
| |
|
|||||| ||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
51568620 |
gaagaaaattcaaatgtttcagcaaaaaaatatggaaatgtcatgaaacttactttatcatctacttctgtgtt |
51568547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 307
Target Start/End: Complemental strand, 51568309 - 51568236
Alignment:
| Q |
233 |
acaataacaaaatttcaataaaagacaacatcataagcctaattttgcactaaccagcacagttttaacaagcaa |
307 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||| ||||||| | |||||||| ||||||||||||||||| |
|
|
| T |
51568309 |
acaatagcaaaagatcaataaaagacaacatcatattcctaattgcg-tctaaccagtacagttttaacaagcaa |
51568236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 194
Target Start/End: Original strand, 11452196 - 11452299
Alignment:
| Q |
92 |
gtgatgttagaacgataaaaggggctgattaagcttctgctgctgcccatacactgagcctac-ggagagatcaagataatgaggtcacggtaaacatca |
190 |
Q |
| |
|
||||||||| ||| ||| |||| ||||||||||||||||||||| |||||| ||| | | ||| || |||||||||||||| ||||||| || ||||||| |
|
|
| T |
11452196 |
gtgatgttaaaacaatagaaggagctgattaagcttctgctgctacccatatactaaacttacaggtgagatcaagataattaggtcacagtgaacatca |
11452295 |
T |
|
| Q |
191 |
agaa |
194 |
Q |
| |
|
|||| |
|
|
| T |
11452296 |
agaa |
11452299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 11452063 - 11452103
Alignment:
| Q |
16 |
attcaaatgtttcagtagaaaaatatggaaataccatgaaa |
56 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
11452063 |
attcaaatgttttagtagaaaaacatggaaataccatgaaa |
11452103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University