View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18234_low_2 (Length: 609)
Name: NF18234_low_2
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_low_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 582; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 39567044 - 39566451
Alignment:
| Q |
1 |
tatatttgtaagcttaatgagtggtaggaaaattccgtacatgttttcaaaataataatgtacattattacaactaagtgagtttaatcagataaaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39567044 |
tatatttgtaagcttaatgagtggtaggaaaattccgtacatgttttcaaaataataatgtacattattacaactaagtgagtttaatcagataaaaatg |
39566945 |
T |
|
| Q |
101 |
ccaactgaggttctagctttattgatggctgtcaattgataccagcattcaagaattttagtcagtacaaaaaccttgcttattctaatgttacttttgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39566944 |
ccaactgaggttctagctttattgatggctgtcaattgataccagcattcaagaattttagtcagtacaaaaaccttgcttattctaatgttacttttgg |
39566845 |
T |
|
| Q |
201 |
ggtcccagttatggattgcattaagatactgtggattcataacccaataccatatcagaataacaagagccaaattggaaaatctagcctttcgagattc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39566844 |
ggtcccagttatggattgcattaagatactgtggattcataacccaataccatatcagaataacaagagccaaattggaaaatctagcctttcgagattc |
39566745 |
T |
|
| Q |
301 |
taaaggttttctttaataagatataatcttctacacaatctcatgtgcatagtttaagattaagatggtattaatatattcacaaagagcacaactgaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
39566744 |
taaaggttttctttaataagatataatcttctacacaatctcatgtgcatagtttaagattaagatggtattaatatattcacaaagagcacaacttaga |
39566645 |
T |
|
| Q |
401 |
tattggatcaattttatataatacactatgttagtgctcaagaataagagcagcttcctggaaagcatttccaatttactttttgcacactatataatac |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39566644 |
tattggatcaattttatataatacactatgttagtgctcaagaataagagcagcttcctggaaagcatttccagtttactttttgcacactatataatac |
39566545 |
T |
|
| Q |
501 |
atcatatacaacacaaatcaaactcaaacaaacatcttaaacatataactagacaaattcctatttagctatactctcaatttttcgatggatc |
594 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39566544 |
atcatatacaacacaactcaaactcaaacaaacatcttaaacatataactagacaaattcctatttagctatactctcaatttttcgatggatc |
39566451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 7 - 534
Target Start/End: Complemental strand, 39562361 - 39561834
Alignment:
| Q |
7 |
tgtaagcttaatgagtggtaggaaaattccgtacatgttttcaaa--ataat-aatgtacattattacaactaagtgagtttaatcagataaaaatgcca |
103 |
Q |
| |
|
||||||||| |||||||||||||||||| | | |||||||| || ||||| |||||||||||| ||||||| ||||||||||| |||||| ||||||| |
|
|
| T |
39562361 |
tgtaagcttgatgagtggtaggaaaattttgca-atgttttctaataataattaatgtacattatcacaacta-gtgagtttaattagataagaatgcca |
39562264 |
T |
|
| Q |
104 |
actgagg-ttctagctttattgatggctgtcaattgataccagcattcaagaattttagtcagtacaaaaaccttgcttattctaatgttacttttgggg |
202 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39562263 |
actgagggttctagttttattgatggctgccaattgaggccagcattcaagaactttagtcagtacaaaaaccttgcttattctaatgttacttttgggg |
39562164 |
T |
|
| Q |
203 |
tcccagttatggattgcattaagatactgtggattcataacccaataccatatcagaataacaagagccaaattggaaaatctagcctttcgagattcta |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
39562163 |
tcccagttatggattgcattaagatactgtggattcataaaccaataccatatcagactaacaagagccaaattggaaaatccagcctttcgagattcta |
39562064 |
T |
|
| Q |
303 |
aaggttttctttaataagatataatcttctacacaatctcatgtgcatagtttaagattaagatggtattaatatattcacaaagagcacaactgagata |
402 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39562063 |
aaggttttctttaataagatataatcttcaacacaatctcacgtgcatggtttaagattaagatggtattaatatattcacaaaaggcacaactgagata |
39561964 |
T |
|
| Q |
403 |
ttggatcaattttatataatacactatgttagtgctcaagaataagagcagcttcctggaaagcatttccaatttactttttgcacactatataatacat |
502 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| |
|
|
| T |
39561963 |
ttggatcaattttatactatacactatgttagtgctcaaggataagagcagcttcctggaaagcatttccaatttaccttttccacactatataatgcat |
39561864 |
T |
|
| Q |
503 |
catatacaacacaaatcaaactcaaacaaaca |
534 |
Q |
| |
|
|| ||||| |||| |||||||||||| |||| |
|
|
| T |
39561863 |
cacataca--acaactcaaactcaaaccaaca |
39561834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 56 - 529
Target Start/End: Complemental strand, 39572498 - 39572034
Alignment:
| Q |
56 |
taatgtacattattacaactaagtgagtttaatcagataaaaatgccaactgagg-ttctagctttattgatggctgtcaattgataccagcattcaaga |
154 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||| |||||| |||||||||||||| |||||| ||||||||||| ||| | | || |||||||||||| |
|
|
| T |
39572498 |
taatgtacattatcacaacta-gtgagtttaattagataagaatgccaactgagggttctagttttattgatgg-tgt-agtggaagccagcattcaagg |
39572402 |
T |
|
| Q |
155 |
attttagtcagtacaaaaaccttgcttattctaatgttacttttggggtcccagttatggattgcattaagatactgtggattcataacccaataccata |
254 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39572401 |
gttttagttagtacaaaaaccttggttattctaatattacttttggtgtcccagttatggattgcattaagatactgtggattcataacccaataccaaa |
39572302 |
T |
|
| Q |
255 |
tcagaataacaagagccaaattggaaaatctagcctttcgagat-------tctaaaggttttctttaataagatataatcttctacacaatctcatgtg |
347 |
Q |
| |
|
||||| |||||| || |||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| ||| ||||||||||||||| |
|
|
| T |
39572301 |
tcagactaacaataggaaaattggaaaatctagcctttcaagattctaaactctaaaggttttctacaataagatataatattcaacacaatctcatgtg |
39572202 |
T |
|
| Q |
348 |
catagtttaagattaagatggtattaatatattcacaaagagcacaactgagatattggatcaattttatataatacactatgttagtgctcaagaataa |
447 |
Q |
| |
|
||| | |||||||||| ||||| |||||||||| |||| | |||||||||||| |||| ||||||||| |||||| ||||| |||| |
|
|
| T |
39572201 |
catgatataagattaagttggtagtaatatattcgcaaaatgaacaactgagatactggacaaattttata------------ttagtgttcaaggataa |
39572114 |
T |
|
| Q |
448 |
gagcagcttcctggaaagcatttccaatttactttttgcacactatataatacatcatatacaacacaaatcaaactcaaac |
529 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| |||| |||||||||||| |
|
|
| T |
39572113 |
gagcagcttcctgtaaagcatttccaatttactttttcaacactatataatacatcacctaca--acaattcaaactcaaac |
39572034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 307 - 499
Target Start/End: Complemental strand, 39560749 - 39560557
Alignment:
| Q |
307 |
ttttctttaataagatataatcttctacacaatctcatgtgcatagtttaagattaagatggtattaatatattcacaaagagcacaactgagatattgg |
406 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||||| |||||||| || |||| |||| ||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
39560749 |
ttttctttaataatatataatcttcaacataatctgatgtgcatgattcaagaataagttggtattaatatattcacaaaaggcacaactgagatactgg |
39560650 |
T |
|
| Q |
407 |
atcaattttatataatacactatgttagtgctcaagaataagagcagcttcctggaaagcatttccaatttactttttgcacactatataata |
499 |
Q |
| |
|
|||||||||||| |||| |||||||||||| |||| |||||| || |||| |||||||||||||| ||||||||||| ||||||| |||||| |
|
|
| T |
39560649 |
atcaattttatacaatatactatgttagtgttcaaagataagatcaacttcatggaaagcatttcctatttactttttccacactacataata |
39560557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 264 - 402
Target Start/End: Original strand, 39584617 - 39584755
Alignment:
| Q |
264 |
caagagccaaattggaaaatctagcctttcgagattctaaaggttttctttaataagatataatcttctacacaatctcatgtgcatagtttaagattaa |
363 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||| ||| |||||||||| ||||||||| ||| |||| ||||||||||| |
|
|
| T |
39584617 |
caagagccaaattagaaaatctagcctttcgagatttacaaggttttctttagtaaaatataatcttgaacacaatctaatgcgcatgatttaagattaa |
39584716 |
T |
|
| Q |
364 |
gatggtattaatatattcacaaagagcacaactgagata |
402 |
Q |
| |
|
| |||| | ||||||||||||| |||||||||||||| |
|
|
| T |
39584717 |
gttggtgtccatatattcacaaaaggcacaactgagata |
39584755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 264 - 415
Target Start/End: Original strand, 39580986 - 39581146
Alignment:
| Q |
264 |
caagagccaaattggaaaatctagcctttcgagattctaaaggttttctttaataag--atataatcttctacacaatctc-------atgtgcatagtt |
354 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||| |||||||||||||| |||| |||||| |||||||||| |||||||| || |
|
|
| T |
39580986 |
caagagcaaaattgtaaaatctagcctttcgagattctaaactttttctttaataaggtatatgatcttcaacacaatctcatgtgcaatgtgcatgatt |
39581085 |
T |
|
| Q |
355 |
taagattaagatggtattaatatattcacaaagagcacaactgagatattggatcaatttt |
415 |
Q |
| |
|
|| |||||| |||||||||||||| |||||| ||||||||||||||| | |||||||||| |
|
|
| T |
39581086 |
caatattaagttggtattaatatatgcacaaaaagcacaactgagatactagatcaatttt |
39581146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 263 - 394
Target Start/End: Original strand, 39574473 - 39574603
Alignment:
| Q |
263 |
acaagagccaaattggaaaatctagcctttcgagattctaaaggttttctttaataagat-ataatcttctacacaatctcatgtgcatagtttaagatt |
361 |
Q |
| |
|
|||||| || |||||||||||| | |||||| |||||| || |||||||||||||| ||| | |||||| ||||||| |||||||| |||||||||| |
|
|
| T |
39574473 |
acaagatccgaattggaaaatccaccctttctagattccaa-ggttttctttaatatgattaaaatctttagaacaatctgatgtgcat-gtttaagatt |
39574570 |
T |
|
| Q |
362 |
aagatggtattaatatattcacaaagagcacaa |
394 |
Q |
| |
|
|| ||||||||| ||||||||||| ||||||| |
|
|
| T |
39574571 |
aatttggtattaaaatattcacaaaaagcacaa |
39574603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 539 - 581
Target Start/End: Complemental strand, 39571984 - 39571942
Alignment:
| Q |
539 |
aaacatataactagacaaattcctatttagctatactctcaat |
581 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
39571984 |
aaacacataactagacaaattcctaactagctatactctcaat |
39571942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 459 - 513
Target Start/End: Original strand, 39581181 - 39581235
Alignment:
| Q |
459 |
tggaaagcatttccaatttactttttgcacactatataatacatcatatacaaca |
513 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
39581181 |
tggaaagcatttccacattactttttccacactatataatgcatcgcatacaaca |
39581235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University