View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18234_low_20 (Length: 303)
Name: NF18234_low_20
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_low_20 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 185 - 303
Target Start/End: Original strand, 6619507 - 6619625
Alignment:
| Q |
185 |
ctctccatcatcatcaccatcttcaccagcaacatctgcatcagaatccggaggattatccccagcgacttcatcatcatcatcggaactaacagcacga |
284 |
Q |
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| T |
6619507 |
ctctccatcatcatcaccatcttcaccagcaacatctgcatcagaatccggaggattttccccagcgacttcatcatcatcatcggaactaacagcacga |
6619606 |
T |
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| Q |
285 |
gcaacagcttccaactcct |
303 |
Q |
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| T |
6619607 |
gcaacagcttccaactcct |
6619625 |
T |
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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 6619372 - 6619420
Alignment:
| Q |
55 |
aaattcatctcaaaatctcataacaaaacatgcacagttaaatcacacc |
103 |
Q |
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| T |
6619372 |
aaattcatctcaaaatctcataacaaaacatgcacagttaaatcacacc |
6619420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 6619328 - 6619356
Alignment:
| Q |
23 |
tcaagtattcaaattttcaactcaagtca |
51 |
Q |
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| T |
6619328 |
tcaagtattcaaattttcaactcaagtca |
6619356 |
T |
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