View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18234_low_22 (Length: 296)
Name: NF18234_low_22
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 42902180 - 42902471
Alignment:
| Q |
1 |
aataaggagaaggacatctgatgggatgcacggtatgacaaggtcatccaatgtatttgatgtatattaatctaacttttttaatgtcaatattggagtg |
100 |
Q |
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| T |
42902180 |
aataaggagaaggacatctgatgggatgcacggtatgacaaggtcatccaatgtatttgatgtatattaatctaaattttttaatgtcaatattggagtg |
42902279 |
T |
|
| Q |
101 |
gaatacacacttctaaatatcaccattta-----------aaacagtttatgtaatacaatagtatatgattgattgatacgttgtattgtattgttgga |
189 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42902280 |
gaatacacacttctaaatatcaccatttatggatagagcaaaacagtttatataatacaatagtatatgattgattgatacgttgtattgtattgttgga |
42902379 |
T |
|
| Q |
190 |
atgaattacaaaactcgaggtaaccacattccattattctaaaagtattaccaattaaatgagtttaaaataagtaattatttatttaaact |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42902380 |
atgaattacaaaactcgaggtaaccacattccattattctaaaagtattaccaattaaatgagttttgcataagtaattatttatttaaact |
42902471 |
T |
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