View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18234_low_30 (Length: 237)

Name: NF18234_low_30
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18234_low_30
NF18234_low_30
[»] chr5 (8 HSPs)
chr5 (1-220)||(7172269-7172488)
chr5 (62-218)||(17441247-17441403)
chr5 (33-218)||(7634750-7634931)
chr5 (104-220)||(7148407-7148530)
chr5 (162-220)||(18936630-18936688)
chr5 (167-220)||(17476091-17476144)
chr5 (79-116)||(17476193-17476230)
chr5 (58-117)||(7148300-7148359)
[»] chr1 (4 HSPs)
chr1 (167-220)||(29861557-29861610)
chr1 (128-219)||(51249326-51249417)
chr1 (167-220)||(30892143-30892196)
chr1 (110-150)||(27259267-27259307)
[»] chr4 (7 HSPs)
chr4 (91-131)||(28999494-28999534)
chr4 (183-220)||(12828492-12828529)
chr4 (104-153)||(20821867-20821916)
chr4 (183-220)||(53801413-53801450)
chr4 (170-220)||(20821813-20821863)
chr4 (34-99)||(26310209-26310272)
chr4 (162-221)||(20821780-20821840)
[»] chr8 (4 HSPs)
chr8 (162-219)||(1410570-1410627)
chr8 (167-219)||(24190897-24190950)
chr8 (101-154)||(30943612-30943665)
chr8 (80-218)||(13706058-13706198)
[»] chr7 (4 HSPs)
chr7 (170-219)||(1505669-1505718)
chr7 (124-219)||(26040256-26040351)
chr7 (167-220)||(23443464-23443517)
chr7 (167-220)||(23457321-23457374)
[»] chr3 (1 HSPs)
chr3 (162-218)||(6269807-6269863)
[»] chr2 (7 HSPs)
chr2 (167-218)||(4865550-4865601)
chr2 (167-218)||(37828635-37828686)
chr2 (110-154)||(15421415-15421459)
chr2 (79-151)||(19478725-19478797)
chr2 (114-174)||(29667708-29667768)
chr2 (167-219)||(37828572-37828624)
chr2 (194-222)||(41104619-41104647)
[»] chr6 (2 HSPs)
chr6 (167-220)||(1706726-1706779)
chr6 (167-207)||(11181521-11181562)


Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 7172269 - 7172488
Alignment:
Q  1 caactactagacgagagatgagattaataaatagaaaattactcttctcccaacaaacaacaaaaaatgcgcactcctatacaaaccgaccaaaatactt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||  |||||| |||||||||||||||||||||  |    
T  7172269 caactactagacgagagatgagactaataaatagaaaattacacttctcccaacaaacaacaaaaaacacgcacttctatacaaaccgaccaaaatatct 7172368  T
Q  101 ccacgtgagttaactcatgcatgtgttaaacagaacgtgacttaagtcacgttgtctacctacgtaagttaactcacgcagattataacacaacgtgagt 200  Q
    ||| ||||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||| |||||| |||||||  |||||||||| |||||||    
T  7172369 ccatgtgagttaactcatgcatgtggtaaacagaacgtgaattaagtcgcgttgtctacctacgtgagttaattcacgcatgttataacacagcgtgagt 7172468  T
Q  201 taactcatgtaggttataac 220  Q
    ||||| ||||||||||||||    
T  7172469 taacttatgtaggttataac 7172488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 218
Target Start/End: Original strand, 17441247 - 17441403
Alignment:
Q  62 aaaaaatgcgcactcctatacaaaccgaccaaaatacttccacgtgagttaactcatgcatgtgttaaacagaacgtgacttaagtcacgttgtctacct 161  Q
    |||||| || |||||| |||||||| ||| ||||||| ||   ||||||||||||| ||||||||||||   ||||||||||||||||||||  |||||     
T  17441247 aaaaaacgctcactcccatacaaactgacaaaaatacctctgtgtgagttaactcacgcatgtgttaaattcaacgtgacttaagtcacgttcgctaccc 17441346  T
Q  162 acgtaagttaactcacgcagattataacacaacgtgagttaactcatgtaggttata 218  Q
    |||| |||||||||| |||| |||||||| | |||||||||||||||||||||||||    
T  17441347 acgtgagttaactcatgcaggttataacatagcgtgagttaactcatgtaggttata 17441403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 33 - 218
Target Start/End: Original strand, 7634750 - 7634931
Alignment:
Q  33 agaaaattactcttctcccaacaaacaacaaaaaatgcgcactcctatacaaaccgaccaaaatact-tccacgtgagttaactcatgcatgtgttaaac 131  Q
    |||||||| |||||||| |||||||    |||||| || ||||||||||||||| ||| |||||||| |||   ||||||||| || |||||||||||||    
T  7634750 agaaaattgctcttctctcaacaaa----aaaaaacgctcactcctatacaaactgacaaaaatactctccgtatgagttaac-cacgcatgtgttaaac 7634844  T
Q  132 agaacgtgacttaagtcacgttgtctacctacgtaagttaactcacgcagattataacacaacgtgagttaactcatgtaggttata 218  Q
      | | ||| ||||||||||||  ||| | |||| ||||| ||||||||| |||| || || |||||||||| ||||||||||||||    
T  7634845 ctatcatgatttaagtcacgttcgctatccacgttagttacctcacgcaggttatgactcagcgtgagttaattcatgtaggttata 7634931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 7148530 - 7148407
Alignment:
Q  104 cgtgagttaactcatgcatgtgttaaacagaacgtgacttaagtcacgttgtctacctacgtaag-------ttaactcacgcagattataacacaacgt 196  Q
    |||||||||||||| |||||||||||||  ||| ||||||||||||||||  ||| | |||| ||       |||||||||| || ||||||| || |||    
T  7148530 cgtgagttaactcacgcatgtgttaaacccaacatgacttaagtcacgttcgctatccacgtgagacgtgagttaactcacgtaggttataactcagcgt 7148431  T
Q  197 gagttaactcatgtaggttataac 220  Q
    ||||||||||||||||||||||||    
T  7148430 gagttaactcatgtaggttataac 7148407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 18936688 - 18936630
Alignment:
Q  162 acgtaagttaactcacgcagattataacacaacgtgagttaactcatgtaggttataac 220  Q
    |||| |||||||||||| || |||||||||| |||||||||||| || |||||||||||    
T  18936688 acgtgagttaactcacgtaggttataacacatcgtgagttaacttatataggttataac 18936630  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 17476091 - 17476144
Alignment:
Q  167 agttaactcacgcagattataacacaacgtgagttaactcatgtaggttataac 220  Q
    |||||||||||| || ||||||  || |||||||||||||||||||||||||||    
T  17476091 agttaactcacgtaggttataatccagcgtgagttaactcatgtaggttataac 17476144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 17476230 - 17476193
Alignment:
Q  79 atacaaaccgaccaaaatacttccacgtgagttaactc 116  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  17476230 atacaaactgaccaaaatacctccacgtgagttaactc 17476193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 7148300 - 7148359
Alignment:
Q  58 caacaaaaaatgcgcactcctatacaaaccgaccaaaatacttcc-acgtgagttaactca 117  Q
    |||||||||| || |||||| |||||||| |||||||||||| || |||||||||||||||    
T  7148300 caacaaaaaa-gctcactcccatacaaactgaccaaaatactccctacgtgagttaactca 7148359  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 29861557 - 29861610
Alignment:
Q  167 agttaactcacgcagattataacacaacgtgagttaactcatgtaggttataac 220  Q
    ||||||||||||||| ||||||| || |||||||||||||||||||||||||||    
T  29861557 agttaactcacgcaggttataacccagcgtgagttaactcatgtaggttataac 29861610  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 51249417 - 51249326
Alignment:
Q  128 aaacagaacgtgacttaagtcacgttgtctacctacgtaagttaactcacgcagattataacacaacgtgagttaactcatgtaggttataa 219  Q
    ||||| ||| ||||||||||||||||  ||||| | || ||||||||| |  |||||||||  || ||||||||||||||||||||||||||    
T  51249417 aaacacaacatgacttaagtcacgttcgctacccatgtgagttaactcgcatagattataatccagcgtgagttaactcatgtaggttataa 51249326  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 30892196 - 30892143
Alignment:
Q  167 agttaactcacgcagattataacacaacgtgagttaactcatgtaggttataac 220  Q
    |||||||||||| || |||||||  | |||||||||||||||||| ||||||||    
T  30892196 agttaactcacgtaggttataacctagcgtgagttaactcatgtatgttataac 30892143  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 27259267 - 27259307
Alignment:
Q  110 ttaactcatgcatgtgttaaacagaacgtgacttaagtcac 150  Q
    |||| |||||||||||||||||| ||||||||||| |||||    
T  27259267 ttaagtcatgcatgtgttaaacataacgtgacttaggtcac 27259307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 28999534 - 28999494
Alignment:
Q  91 caaaatacttccacgtgagttaactcatgcatgtgttaaac 131  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  28999534 caaaatacttccacgtgagttaactcatgcaggtgttaaac 28999494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 12828492 - 12828529
Alignment:
Q  183 ttataacacaacgtgagttaactcatgtaggttataac 220  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  12828492 ttataacccaacgtgagttaactcatgtaggttataac 12828529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 20821916 - 20821867
Alignment:
Q  104 cgtgagttaactcatgcatgtgttaaacagaacgtgacttaagtcacgtt 153  Q
    |||||||||||||| |||||||||||||  ||||||| ||||||||||||    
T  20821916 cgtgagttaactcacgcatgtgttaaacccaacgtgaattaagtcacgtt 20821867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 53801413 - 53801450
Alignment:
Q  183 ttataacacaacgtgagttaactcatgtaggttataac 220  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  53801413 ttataacccaacgtgagttaactcatgtaggttataac 53801450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 20821863 - 20821813
Alignment:
Q  170 taactcacgcagattataacacaacgtgagttaactcatgtaggttataac 220  Q
    ||||||||  || ||||||  ||||||||||||||||||||||||||||||    
T  20821863 taactcacttaggttataatccaacgtgagttaactcatgtaggttataac 20821813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 99
Target Start/End: Original strand, 26310209 - 26310272
Alignment:
Q  34 gaaaattactcttctcccaacaaacaacaaaaaatgcgcactcctatacaaaccgaccaaaatact 99  Q
    ||||||| ||||||| |||||||| ||  |||||||| |||||| |||||||| ||||||||||||    
T  26310209 gaaaattgctcttcttccaacaaaaaa--aaaaatgctcactcccatacaaactgaccaaaatact 26310272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 20821840 - 20821780
Alignment:
Q  162 acgtaagttaactcacgcagattataacacaa-cgtgagttaactcatgtaggttataact 221  Q
    |||| |||||||||| | || |||||||||   ||||||||||||||||||||||||||||    
T  20821840 acgtgagttaactcatgtaggttataacaccggcgtgagttaactcatgtaggttataact 20821780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 1410570 - 1410627
Alignment:
Q  162 acgtaagttaactcacgcagattataacacaacgtgagttaactcatgtaggttataa 219  Q
    |||| |||||||||||  |||||||||| || ||||||||| ||||||||||||||||    
T  1410570 acgtgagttaactcacatagattataacccagcgtgagttagctcatgtaggttataa 1410627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 219
Target Start/End: Complemental strand, 24190950 - 24190897
Alignment:
Q  167 agttaactcacgcagattataacaca-acgtgagttaactcatgtaggttataa 219  Q
    ||||||||||||| | ||||||  || |||||||||||||||||||||||||||    
T  24190950 agttaactcacgctggttataaatcatacgtgagttaactcatgtaggttataa 24190897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 154
Target Start/End: Complemental strand, 30943665 - 30943612
Alignment:
Q  101 ccacgtgagttaactcatgcatgtgttaaacagaacgtgacttaagtcacgttg 154  Q
    |||||||| |||| ||| |||||||||||||  | |||||||||||||||||||    
T  30943665 ccacgtgacttaattcacgcatgtgttaaacccagcgtgacttaagtcacgttg 30943612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 218
Target Start/End: Original strand, 13706058 - 13706198
Alignment:
Q  80 tacaaaccgaccaaaatacttcca-cgtgagttaactcatgcatgtgttaaacagaacgtgacttaagtcacgttgtctacctacgtaagttaactcacg 178  Q
    ||||||| |||||||| ||||||  | ||||||||||||  ||  ||||||||  ||||||||||| ||||||||  ||||  || | |||||||||| |    
T  13706058 tacaaactgaccaaaacacttcctgcatgagttaactcacacagatgttaaacccaacgtgacttatgtcacgttcgctactcacatgagttaactcatg 13706157  T
Q  179 cagattataa-cacaacgtgagttaactcatgtaggttata 218  Q
    ||| |||||| | ||  || ||||||||||||||| |||||    
T  13706158 caggttataaccccagtgtaagttaactcatgtagattata 13706198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 1505718 - 1505669
Alignment:
Q  170 taactcacgcagattataacacaacgtgagttaactcatgtaggttataa 219  Q
    ||||||||| || ||||||  |||||||||||||||||||||||||||||    
T  1505718 taactcacgtaggttataattcaacgtgagttaactcatgtaggttataa 1505669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 26040351 - 26040256
Alignment:
Q  124 tgttaaacagaacgtgacttaagtcacgttgtctacctacgtaagttaactcacgcagattataacacaacgtgagttaactcatgtaggttataa 219  Q
    ||||||||| || |||||||||||||||||   || | | || |||||| | |||||| ||||||  |||  ||||||||||||||||||||||||    
T  26040351 tgttaaacacaaagtgacttaagtcacgtttgttaaccatgtgagttaatttacgcaggttataattcaatatgagttaactcatgtaggttataa 26040256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Complemental strand, 23443517 - 23443464
Alignment:
Q  167 agttaactcacgcagattataacacaacgtgagttaactcatgtaggttataac 220  Q
    ||||||||||||  | ||||||| |||||||||||| ||||||||| |||||||    
T  23443517 agttaactcacgtgggttataacccaacgtgagttagctcatgtagattataac 23443464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 23457321 - 23457374
Alignment:
Q  167 agttaactcacgcagattataacacaacgtgagttaactcatgtaggttataac 220  Q
    ||||||||||||  | ||||||| |||||||||||| ||||||||| |||||||    
T  23457321 agttaactcacgtgggttataacccaacgtgagttagctcatgtagattataac 23457374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 218
Target Start/End: Original strand, 6269807 - 6269863
Alignment:
Q  162 acgtaagttaactcacgcagattataacacaacgtgagttaactcatgtaggttata 218  Q
    |||| |||||||||||| |||||||||   ||||||||||||||||||||| |||||    
T  6269807 acgtgagttaactcacgtagattataatctaacgtgagttaactcatgtagattata 6269863  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 4865601 - 4865550
Alignment:
Q  167 agttaactcacgcagattataacacaacgtgagttaactcatgtaggttata 218  Q
    |||||||||| | || ||||||| || |||||||||||||||||||||||||    
T  4865601 agttaactcaagtaggttataacccagcgtgagttaactcatgtaggttata 4865550  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 37828635 - 37828686
Alignment:
Q  167 agttaactcacgcagattataacacaacgtgagttaactcatgtaggttata 218  Q
    |||||||||| | || ||||||| || |||||||||||||||||||||||||    
T  37828635 agttaactcatgtaggttataacccagcgtgagttaactcatgtaggttata 37828686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 15421415 - 15421459
Alignment:
Q  110 ttaactcatgcatgtgttaaacagaacgtgacttaagtcacgttg 154  Q
    |||| |||||||||||||||||  || ||||||||||||||||||    
T  15421415 ttaagtcatgcatgtgttaaacccaatgtgacttaagtcacgttg 15421459  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 19478725 - 19478797
Alignment:
Q  79 atacaaaccgaccaaaatacttccacgtgagttaactcatgcatgtgttaaacagaacgtgacttaagtcacg 151  Q
    |||||||| ||| |||||||  | ||||||||||| ||| ||| |||||||| | ||||||| ||||||||||    
T  19478725 atacaaactgactaaaataccccaacgtgagttaagtcacgcaggtgttaaatacaacgtgagttaagtcacg 19478797  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 29667768 - 29667708
Alignment:
Q  114 ctcatgcatgtgttaaacagaacgtgacttaagtcacgttgtctacctacgtaagttaact 174  Q
    |||| |||| ||||||||  ||||||||||||||||||||  ||||| |||| ||||||||    
T  29667768 ctcacgcatatgttaaacccaacgtgacttaagtcacgttcgctacccacgtgagttaact 29667708  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 37828572 - 37828624
Alignment:
Q  167 agttaactcacgcagattataacacaacgtgagttaactcatgtaggttataa 219  Q
    ||||||||||| ||| |||||||  | ||||||||||||||||||| ||||||    
T  37828572 agttaactcacacaggttataacctagcgtgagttaactcatgtagcttataa 37828624  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 41104619 - 41104647
Alignment:
Q  194 cgtgagttaactcatgtaggttataactt 222  Q
    |||||||||||||||||||||||||||||    
T  41104619 cgtgagttaactcatgtaggttataactt 41104647  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 1706726 - 1706779
Alignment:
Q  167 agttaactcacgcagattataacacaacgtgagttaactcatgtaggttataac 220  Q
    |||||||||||  || ||||||| || ||||| |||||||||||||||||||||    
T  1706726 agttaactcactaaggttataacccagcgtgaattaactcatgtaggttataac 1706779  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 11181562 - 11181521
Alignment:
Q  167 agttaactcacgcagattataacac-aacgtgagttaactca 207  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  11181562 agttaactcacgcagattataacactagcgtgagttaactca 11181521  T

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