View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18234_low_33 (Length: 227)

Name: NF18234_low_33
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18234_low_33
NF18234_low_33
[»] chr8 (2 HSPs)
chr8 (1-215)||(3385970-3386184)
chr8 (152-198)||(37466468-37466514)
[»] chr6 (3 HSPs)
chr6 (147-198)||(29734438-29734489)
chr6 (147-196)||(10401950-10401999)
chr6 (152-196)||(19680547-19680591)
[»] chr4 (7 HSPs)
chr4 (147-198)||(13483181-13483232)
chr4 (147-198)||(49649147-49649198)
chr4 (147-198)||(52353833-52353884)
chr4 (152-198)||(2472892-2472938)
chr4 (153-195)||(20943622-20943664)
chr4 (153-198)||(41534218-41534263)
chr4 (155-191)||(22593644-22593680)
[»] chr7 (3 HSPs)
chr7 (152-198)||(33316147-33316193)
chr7 (153-198)||(2443342-2443387)
chr7 (152-196)||(1694490-1694534)
[»] chr3 (2 HSPs)
chr3 (152-198)||(49492033-49492079)
chr3 (147-196)||(45301187-45301236)
[»] chr1 (1 HSPs)
chr1 (147-191)||(29823782-29823826)


Alignment Details
Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 3385970 - 3386184
Alignment:
Q  1 ccaaacaccaatagaggggctactccatatagtaccgctcaaagttagaatatattgttaaatatgtttgtgg-ttctacaaatataccagctatttgtt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||||| |||||||||    
T  3385970 ccaaacaccaatagaggggctactccatatagtaccgctcaaagttagaatatattgttaaatatatatgtggtttttacaaatataccaactatttgtt 3386069  T
Q  100 tcagttcttataaaaagtttcttcgatttttagtccttcnnnnnnnnttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattcaa 199  Q
    |||||||||||||||||||||||||||||||| ||||||        || |||||||| |||| ||||| |||||||||||| ||||||||| |||| ||    
T  3386070 tcagttcttataaaaagtttcttcgatttttaatccttcaaaaaaattt-aacttcacatttaatctctccttttaagtaaatttatatgtataatttaa 3386168  T
Q  200 atggtatggtaataca 215  Q
    ||| ||||| ||||||    
T  3386169 atgatatggcaataca 3386184  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 37466514 - 37466468
Alignment:
Q  152 cttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 198  Q
    |||||||||| |||||| |||| ||||||||| ||||||||||||||    
T  37466514 cttcactttttgtctctcctttaaagtaaactcatatgtaaaattca 37466468  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 29734438 - 29734489
Alignment:
Q  147 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 198  Q
    |||| |||||||| ||||||||  ||||||||||||||||||||| ||||||    
T  29734438 ttcatcttcacttctagtctctcattttaagtaaacttatatgtagaattca 29734489  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 10401950 - 10401999
Alignment:
Q  147 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaatt 196  Q
    |||| |||||||||| ||||||||||| ||||||||| ||||||| ||||    
T  10401950 ttcagcttcacttttggtctcttctttaaagtaaactcatatgtataatt 10401999  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 19680547 - 19680591
Alignment:
Q  152 cttcacttttagtctcttcttttaagtaaacttatatgtaaaatt 196  Q
    |||||||||| ||| || |||| ||||||||||||||||||||||    
T  19680547 cttcacttttggtccctcctttaaagtaaacttatatgtaaaatt 19680591  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 13483232 - 13483181
Alignment:
Q  147 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 198  Q
    |||| ||||||||||  |||||||||| ||||||||| ||||||||||||||    
T  13483232 ttcatcttcacttttgatctcttctttaaagtaaactcatatgtaaaattca 13483181  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 49649198 - 49649147
Alignment:
Q  147 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 198  Q
    |||| |||||||||| ||||||||||| ||||||||| ||||||| ||||||    
T  49649198 ttcatcttcacttttggtctcttctttaaagtaaactcatatgtataattca 49649147  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 52353833 - 52353884
Alignment:
Q  147 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 198  Q
    |||| ||||| |||||||||||||||| ||||||||| ||||||| ||||||    
T  52353833 ttcatcttcaattttagtctcttctttaaagtaaactcatatgtagaattca 52353884  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 2472938 - 2472892
Alignment:
Q  152 cttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 198  Q
    |||||||||| |||||| ||||||||||||||  |||||||||||||    
T  2472938 cttcacttttggtctctccttttaagtaaactagtatgtaaaattca 2472892  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 20943664 - 20943622
Alignment:
Q  153 ttcacttttagtctcttcttttaagtaaacttatatgtaaaat 195  Q
    ||||||||||||| || |||| |||||||||||||||||||||    
T  20943664 ttcacttttagtccctcctttaaagtaaacttatatgtaaaat 20943622  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 41534218 - 41534263
Alignment:
Q  153 ttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 198  Q
    |||| |||||||||||||||| ||||||||| |||| |||||||||    
T  41534218 ttcatttttagtctcttctttaaagtaaactaatatataaaattca 41534263  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Original strand, 22593644 - 22593680
Alignment:
Q  155 cacttttagtctcttcttttaagtaaacttatatgta 191  Q
    |||||||||||||| ||||||||||||||||| ||||    
T  22593644 cacttttagtctctacttttaagtaaacttatgtgta 22593680  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Original strand, 33316147 - 33316193
Alignment:
Q  152 cttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 198  Q
    |||||||||| ||| ||||||| ||||||||| ||||||||||||||    
T  33316147 cttcacttttggtcacttctttaaagtaaactcatatgtaaaattca 33316193  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 2443342 - 2443387
Alignment:
Q  153 ttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 198  Q
    ||||||||| ||||||||||| ||||||||| ||||||| ||||||    
T  2443342 ttcacttttggtctcttctttaaagtaaactcatatgtagaattca 2443387  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 1694490 - 1694534
Alignment:
Q  152 cttcacttttagtctcttcttttaagtaaacttatatgtaaaatt 196  Q
    |||||||||| ||||||||||| ||||||||| |||| |||||||    
T  1694490 cttcacttttggtctcttctttaaagtaaactcatatataaaatt 1694534  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 49492079 - 49492033
Alignment:
Q  152 cttcacttttagtctcttcttttaagtaaacttatatgtaaaattca 198  Q
    |||||||||| ||||||||||||||||||||| || |||| ||||||    
T  49492079 cttcacttttggtctcttcttttaagtaaactcatgtgtagaattca 49492033  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 45301236 - 45301187
Alignment:
Q  147 ttcaacttcacttttagtctcttcttttaagtaaacttatatgtaaaatt 196  Q
    |||| |||||||||||||||| ||||| ||||||||| |||| |||||||    
T  45301236 ttcatcttcacttttagtctcatctttaaagtaaactcatatttaaaatt 45301187  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 29823826 - 29823782
Alignment:
Q  147 ttcaacttcacttttagtctcttcttttaagtaaacttatatgta 191  Q
    |||| |||||||||| |||||| |||||||||||||| |||||||    
T  29823826 ttcatcttcacttttggtctctccttttaagtaaactcatatgta 29823782  T

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