View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18234_low_34 (Length: 224)
Name: NF18234_low_34
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 2625504 - 2625694
Alignment:
| Q |
19 |
aaagctatttggcattgtgttattccaccttcaaaatctttattgatttggagaagcttgcataataagttacctactgatgacaacttatctgtaagag |
118 |
Q |
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| T |
2625504 |
aaagctatctggcatattgttattccaccttcaaaacctttattgatttggagaagcttgaataataagttacctactgatgacaagttatctacaaaag |
2625603 |
T |
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| Q |
119 |
gttgttatttgtcttcaatgtgcaatctctgtaactctaacattgaaacatctaagcacattttctttaaatgtgagttttctattcatat |
209 |
Q |
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| T |
2625604 |
gttgttatttgtcttcaatgtgcaatctctgtaactctaacattgaaacatctaagcacattttctttaaatgtgagttttctattcatat |
2625694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 22163087 - 22163027
Alignment:
| Q |
43 |
ccaccttcaaaatctttattgatttggagaagcttgcataataagttacctactgatgaca |
103 |
Q |
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| T |
22163087 |
ccaccatcaaaatctatgatgatttggagaagcttgcataataagctcccaactgatgaca |
22163027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 8499253 - 8499314
Alignment:
| Q |
40 |
attccaccttcaaaatctttattgatttggagaagcttgcataataagttacctactgatga |
101 |
Q |
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| T |
8499253 |
attccaccttctaagtctttattgatttggagactcatgcacaataagttaccaacagatga |
8499314 |
T |
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