View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18234_low_6 (Length: 498)
Name: NF18234_low_6
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 7 - 481
Target Start/End: Complemental strand, 38126468 - 38125980
Alignment:
| Q |
7 |
cacattttatcagagaaaaagagcgattcaacttcaaaaagcaagctcaactgaaatgaa-----------aaagagtcaaagatactcacaatcattcc |
95 |
Q |
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| T |
38126468 |
cacatttgatcagagaaaattagcgatgcaacttcaaaaagcaagctcagctgaaatgaacatcatcagaaaaagagtagaagatactcacaatcattcc |
38126369 |
T |
|
| Q |
96 |
agcatgagcacacatgtagaaatcataattcctaggatgacaaattttgctgtccacaacagttcctgcaaaaccaaaaagtggttagctagacaagaaa |
195 |
Q |
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||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||| |||| |
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| T |
38126368 |
agcatgagcacacatataaaaatcataattcctaggatggcaaattttgctgtccacaacagttcctgcaataccaaaaagaggttggctagacatgaaa |
38126269 |
T |
|
| Q |
196 |
ccaactctatgtaaaataatggaattatgacaaacttc---ataagttgtttaccaggtggtacattgtctggagatcgaggttggaagaattttgtgtg |
292 |
Q |
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|||||| ||| ||||||||||||| ||||||||||||| | ||| || ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38126268 |
ccaactttatataaaataatggaactatgacaaacttcagaacaagctgattaccaggtggcacattgtctggagatcgaggttggaagaattttgtgtg |
38126169 |
T |
|
| Q |
293 |
atggttcttctgggcaacaatcaccagaaacttgggattccatgtttcatcaagaaatttacaagcctaaaacttgaaaggttaagattaaacccnnnnn |
392 |
Q |
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||| |||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
38126168 |
atgattcttctgggcaacaatcaccataaacttggggttccaattttcatcaagaaatttacaagcctaaaacttgaaagatttagattaaacccaaaaa |
38126069 |
T |
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| Q |
393 |
nntaaaacaatatatatttaatgcaaatttgatcaatttaagaacctcgatgatttggctgagttcaacgttcaaaacttggttgaact |
481 |
Q |
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| T |
38126068 |
aataaaacaatatatatttaatgcaaatttgttcaatttaagaacctcgatgatttggctgagttcaacgttcaacacttcgttgaact |
38125980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 64 - 175
Target Start/End: Complemental strand, 38118282 - 38118171
Alignment:
| Q |
64 |
gaaaaagagtcaaagatactcacaatcattccagcatgagcacacatgtagaaatcataattcctaggatgacaaattttgctgtccacaacagttcctg |
163 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| |||| |
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| T |
38118282 |
gaaaaagagtagaagatactcacaatcattccagcatgagcacacatgtagaaatcataattccggggatgacagattttgttgtccacaacagtacctg |
38118183 |
T |
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| Q |
164 |
caaaaccaaaaa |
175 |
Q |
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|||||||||||| |
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| T |
38118182 |
caaaaccaaaaa |
38118171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 245 - 481
Target Start/End: Complemental strand, 38118091 - 38117858
Alignment:
| Q |
245 |
accaggtggtacattgtctggagatcgaggttggaagaattttgtgtgatggttcttctgggcaacaatcaccagaaacttgggattccatgtttcatca |
344 |
Q |
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| T |
38118091 |
accaggaggcacattatccggagatccaggctggaagaactttgtgtgatgattcttctgggcaacaataaccagaaatttggggttccacttttcatca |
38117992 |
T |
|
| Q |
345 |
agaaatttacaagcctaaaacttgaaaggttaagattaaacccnnnnnnntaaaacaat-atatatttaatgcaaatttgatcaatttaagaacctcgat |
443 |
Q |
| |
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|||||||| || |||| || || |||| ||||||||| ||| ||| |||| |||||||||| | || ||||||| ||| | |||||| || |
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| T |
38117991 |
agaaatttgcaggcctggaatttaaaagaataagattaatcccaacaag--aaagcaatcatatatttaaaggaa--ttgatcactttgacaacctcaat |
38117896 |
T |
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| Q |
444 |
gatttggctgagttcaacgttcaaaacttggttgaact |
481 |
Q |
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||||||||| ||||||| |||||||||||||||||||| |
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| T |
38117895 |
gatttggctcagttcaatgttcaaaacttggttgaact |
38117858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 65 - 380
Target Start/End: Complemental strand, 14918817 - 14918498
Alignment:
| Q |
65 |
aaaaagagtcaaagatactcacaatcattccagcatgagcacacatgtagaaatcataattcctaggatgacaaattttgctgtccacaacagttcctgc |
164 |
Q |
| |
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||||||||| |||||||||||||| |||| ||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14918817 |
aaaaagagtagaagatactcacaattcttcctgcatgagaacacatatagaaatcataattcctaggatgacaaattttgttgtccacaacagttcctgc |
14918718 |
T |
|
| Q |
165 |
aaaaccaaaaagtggttagctagacaagaaaccaac-----tctatgtaaaataatggaattatgacaaactt---cataagttgtttaccaggtggtac |
256 |
Q |
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| T |
14918717 |
aaaaccaaaaagaggttagct----atgaaaccaacattattatatataaaataatggaactatgaaaaacataagaacaagttgcttaccaggtggcac |
14918622 |
T |
|
| Q |
257 |
attgtctggagatcgaggttggaagaattttgtgtgatggttcttctgggcaacaatcaccagaaacttgggattccatgtttcatcaagaaatttacaa |
356 |
Q |
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| T |
14918621 |
attgtttcgattttcaggttggaagaattttgtgtgatgtctcttctgggcaacaatcaacaaaaacttggggttccagtcttcatcaagaaatttacaa |
14918522 |
T |
|
| Q |
357 |
gcctaaaacttgaaaggttaagat |
380 |
Q |
| |
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|||||||| ||||||| ||||||| |
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| T |
14918521 |
gcctaaaatttgaaagattaagat |
14918498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 405 - 481
Target Start/End: Complemental strand, 14918260 - 14918184
Alignment:
| Q |
405 |
tatatttaatgcaaatttgatcaatttaagaacctcgatgatttggctgagttcaacgttcaaaacttggttgaact |
481 |
Q |
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| T |
14918260 |
tatatttaatgcaaatttgatgaagttaagaacctcgatgatttggccgagttcgacgttcaaaacttggttgaact |
14918184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 35469099 - 35469008
Alignment:
| Q |
77 |
agatactcacaatcattccagcatgagcacacatgtagaaatcataattcctaggatgacaaattttgctgtccacaacagttcctgcaaaa |
168 |
Q |
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| T |
35469099 |
agatactcactatcatcccagcatgagcacagaggtagaaatcatagtttcttggatgacaaattttattgtcgataacagttcctgcaaaa |
35469008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 37590833 - 37590882
Alignment:
| Q |
85 |
acaatcattccagcatgagcacacatgtagaaatcataattcctaggatg |
134 |
Q |
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| T |
37590833 |
acaatcattccagcatgagcacacatgtagaaatcgtaatttcttggatg |
37590882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 362
Target Start/End: Complemental strand, 35468901 - 35468815
Alignment:
| Q |
276 |
tggaagaattttgtgtgatggttcttctgggcaacaatcaccagaaacttgggattccatgtttcatcaagaaatttacaagcctaa |
362 |
Q |
| |
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||||||||| ||||||| |||||||| || |||||||| |||| ||| || ||| |||| ||||||||||||| || || |||||| |
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| T |
35468901 |
tggaagaatcttgtgtggtggttcttttgagcaacaattaccacaaattttggagtccaattttcatcaagaaacttgcatgcctaa |
35468815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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