View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18234_low_9 (Length: 469)
Name: NF18234_low_9
Description: NF18234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18234_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 14407747 - 14407318
Alignment:
| Q |
1 |
ttctgatgtggctattcttcgaaaccatgttcaacatcattcatgatttaaatcattgttgtgatccttggtaatgtagaaagttgttgtcaaacacgac |
100 |
Q |
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| T |
14407747 |
ttctgatgtggctattccttgaaaccatgttcaacatcattcatgatttaaatcattgttgcgatccttggtaaggtagaaagttgttgtcaaacacgac |
14407648 |
T |
|
| Q |
101 |
taatgcggctgcaacgttggcaatagtttatgcgtcaatggtagtcagttctgcaatagtaatgtgactgtggaaatatcataaaccttggcaacatgac |
200 |
Q |
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| T |
14407647 |
taatgcggctacaatgttggcaatagtctatgcgtccatggtagtcagttctgcaatagtaatgtgactgtggaaatatcataaaccttggcaacatgac |
14407548 |
T |
|
| Q |
201 |
taccaatgacacgtaggctgtgttttagaatattatttttatatttggttactgattggttgagttgggaagtatatcattcatattcacaaattaataa |
300 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14407547 |
taccaatgacgtgtaggctgtgttttagaatattatttttatatttggttactgattggttgagttgggaagtatatcattcatattcacaaattaataa |
14407448 |
T |
|
| Q |
301 |
ttaaagccctacaattgcgaccatccctaattaaggcaaaccaaattgcagccagccctgtaatctgtcaacagttgtaacagattaattaagttggggt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
14407447 |
ttaaagccctacaattgcgaccatccctaattaaggcaaaccaaattgcagccagccctgtaatctgtcaacagttgtaacagcttaattaagtt-gggt |
14407349 |
T |
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| Q |
401 |
tgaggtggtgggtttaggctcatattgtcta |
431 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
14407348 |
tgaggtggtgggtttaggctcatattgtcta |
14407318 |
T |
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