View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18235_high_16 (Length: 250)
Name: NF18235_high_16
Description: NF18235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18235_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 63 - 239
Target Start/End: Complemental strand, 5139964 - 5139789
Alignment:
| Q |
63 |
ttcggattatatatagaatccaaatgacatttttgaaaataacatagggtggttgagaaccttcatatggtgagaagagttacagtcaaatcttggtagc |
162 |
Q |
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| T |
5139964 |
ttcgaattatatatataatccaaatgacatttttgaaaataacataggatggttgagaacct-cgtatggtgagaagagttacagtcaaatcttggtagc |
5139866 |
T |
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| Q |
163 |
ctatacctatgtcctccccaggtttgatccatttagttttagcaagcacaaattatgcttgatcatacccgcttcat |
239 |
Q |
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| T |
5139865 |
ctatacctatgtcctccccaggtttgatccatttagttttagcaagcacaaattatgcttgatcatacccgcttcat |
5139789 |
T |
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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5140211 - 5140141
Alignment:
| Q |
1 |
taaattagttattcaataaatttaaaatccaaactgcaataatctaggttagattaaatgggttcggattat |
72 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
5140211 |
taaattagttattcaataactttaaaatccaaactgcaataatcca-gttagattaaatgggttcggattat |
5140141 |
T |
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