View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18235_high_7 (Length: 416)

Name: NF18235_high_7
Description: NF18235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18235_high_7
NF18235_high_7
[»] chr1 (19 HSPs)
chr1 (1-296)||(5594203-5594507)
chr1 (64-181)||(5609572-5609692)
chr1 (324-395)||(5594535-5594606)
chr1 (64-181)||(4395391-4395511)
chr1 (64-193)||(44527486-44527619)
chr1 (64-185)||(14485243-14485367)
chr1 (87-186)||(36733946-36734048)
chr1 (64-185)||(48949554-48949678)
chr1 (64-185)||(51113548-51113672)
chr1 (64-189)||(25682884-25683012)
chr1 (67-181)||(2885463-2885580)
chr1 (67-185)||(24538723-24538845)
chr1 (66-185)||(44602987-44603104)
chr1 (64-190)||(16816622-16816751)
chr1 (67-165)||(48166463-48166561)
chr1 (64-146)||(52109686-52109768)
chr1 (64-133)||(17371681-17371750)
chr1 (64-165)||(21031382-21031483)
chr1 (133-181)||(3297034-3297085)
[»] chr4 (26 HSPs)
chr4 (63-190)||(21321762-21321892)
chr4 (65-185)||(44935912-44936035)
chr4 (64-185)||(2065086-2065210)
chr4 (64-185)||(32576878-32577002)
chr4 (64-183)||(49951546-49951668)
chr4 (64-185)||(51259359-51259483)
chr4 (74-186)||(26422431-26422546)
chr4 (65-186)||(28537612-28537740)
chr4 (64-181)||(18441981-18442101)
chr4 (64-185)||(28426416-28426540)
chr4 (64-185)||(41835142-41835265)
chr4 (64-185)||(49119230-49119354)
chr4 (90-185)||(10575279-10575377)
chr4 (66-185)||(51734802-51734924)
chr4 (107-185)||(6753949-6754029)
chr4 (64-186)||(37245684-37245806)
chr4 (64-183)||(29655498-29655620)
chr4 (66-184)||(47226163-47226282)
chr4 (63-186)||(24989763-24989889)
chr4 (67-190)||(43840150-43840276)
chr4 (67-181)||(55735251-55735368)
chr4 (64-154)||(56065866-56065956)
chr4 (64-179)||(8754299-8754417)
chr4 (64-155)||(23095447-23095538)
chr4 (77-185)||(3347351-3347462)
chr4 (121-189)||(34926172-34926243)
[»] chr8 (13 HSPs)
chr8 (64-185)||(13415256-13415380)
chr8 (64-185)||(40588560-40588684)
chr8 (64-185)||(477886-478010)
chr8 (64-186)||(11870497-11870622)
chr8 (64-181)||(598071-598191)
chr8 (64-143)||(9497011-9497090)
chr8 (64-185)||(36194451-36194575)
chr8 (64-157)||(33642625-33642718)
chr8 (64-186)||(185425-185546)
chr8 (69-185)||(28315345-28315463)
chr8 (64-144)||(7127456-7127536)
chr8 (95-162)||(37712331-37712398)
chr8 (64-153)||(8450988-8451077)
[»] chr7 (17 HSPs)
chr7 (64-185)||(44481320-44481444)
chr7 (64-185)||(17877631-17877755)
chr7 (64-181)||(24139244-24139364)
chr7 (64-185)||(9328432-9328556)
chr7 (64-181)||(16732166-16732286)
chr7 (64-181)||(17710300-17710420)
chr7 (64-185)||(29200786-29200909)
chr7 (64-184)||(30493441-30493564)
chr7 (64-185)||(24251672-24251793)
chr7 (64-181)||(16098723-16098846)
chr7 (64-185)||(3601885-3602009)
chr7 (64-185)||(30824326-30824448)
chr7 (64-185)||(33224390-33224514)
chr7 (64-185)||(47580108-47580231)
chr7 (64-157)||(22289474-22289567)
chr7 (64-185)||(1581849-1581974)
chr7 (63-186)||(3275266-3275393)
[»] chr2 (14 HSPs)
chr2 (64-190)||(88792-88921)
chr2 (64-185)||(34695734-34695858)
chr2 (64-185)||(34718146-34718270)
chr2 (64-190)||(12130463-12130592)
chr2 (64-186)||(9710188-9710313)
chr2 (63-186)||(25552377-25552503)
chr2 (64-190)||(11291890-11292018)
chr2 (67-185)||(14827315-14827436)
chr2 (64-190)||(35158667-35158797)
chr2 (67-170)||(22845761-22845862)
chr2 (107-185)||(1417820-1417902)
chr2 (107-154)||(43293919-43293966)
chr2 (64-162)||(13109728-13109823)
chr2 (64-136)||(18344176-18344248)
[»] chr3 (15 HSPs)
chr3 (64-185)||(26046921-26047045)
chr3 (64-185)||(27608733-27608857)
chr3 (64-185)||(34497202-34497326)
chr3 (64-162)||(53497265-53497363)
chr3 (64-185)||(55213558-55213682)
chr3 (64-181)||(42340111-42340231)
chr3 (64-179)||(2615716-2615834)
chr3 (64-181)||(647004-647124)
chr3 (64-181)||(2121314-2121434)
chr3 (64-152)||(55199744-55199832)
chr3 (75-185)||(31341555-31341668)
chr3 (64-190)||(48227601-48227730)
chr3 (72-185)||(19117550-19117666)
chr3 (89-185)||(24181788-24181887)
chr3 (64-157)||(11020042-11020134)
[»] chr6 (10 HSPs)
chr6 (65-181)||(15605828-15605947)
chr6 (68-193)||(11731491-11731619)
chr6 (64-165)||(14680395-14680496)
chr6 (64-157)||(34104326-34104419)
chr6 (65-186)||(21944457-21944581)
chr6 (112-186)||(3101261-3101337)
chr6 (109-185)||(1992480-1992559)
chr6 (129-185)||(19690333-19690392)
chr6 (64-156)||(27443166-27443258)
chr6 (66-133)||(5542602-5542669)
[»] chr5 (21 HSPs)
chr5 (63-185)||(11375352-11375477)
chr5 (64-181)||(25731041-25731161)
chr5 (64-193)||(27292667-27292798)
chr5 (64-181)||(4268332-4268456)
chr5 (64-190)||(32632748-32632876)
chr5 (65-165)||(34652114-34652216)
chr5 (64-185)||(20205188-20205312)
chr5 (64-185)||(22767103-22767227)
chr5 (64-137)||(23075065-23075138)
chr5 (64-157)||(27532767-27532860)
chr5 (64-182)||(8388319-8388440)
chr5 (64-185)||(41940566-41940691)
chr5 (64-180)||(12660549-12660668)
chr5 (65-185)||(30573507-30573630)
chr5 (64-157)||(15988608-15988703)
chr5 (107-185)||(26597296-26597377)
chr5 (117-193)||(26296352-26296432)
chr5 (127-190)||(26076577-26076643)
chr5 (129-185)||(3308175-3308234)
chr5 (118-162)||(2872295-2872339)
chr5 (130-162)||(23083639-23083671)
[»] scaffold0922 (1 HSPs)
scaffold0922 (64-135)||(147-218)
[»] scaffold0446 (1 HSPs)
scaffold0446 (64-154)||(423-513)
[»] scaffold0198 (1 HSPs)
scaffold0198 (64-154)||(20391-20481)
[»] scaffold0067 (1 HSPs)
scaffold0067 (127-190)||(26126-26192)
[»] scaffold0003 (1 HSPs)
scaffold0003 (64-156)||(44103-44195)


Alignment Details
Target: chr1 (Bit Score: 153; Significance: 6e-81; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 5594203 - 5594507
Alignment:
Q  1 agaaataaccaacacttcaggtttttgcatcttaaaa-tttggataaaatattnnnnnnnnttagagacaagcgaacatggttgcttatactttaactag 99  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||        || |||||||||||||||||||||| |||||||||||||    
T  5594203 agaaataaccaacacttcaggtttttgcatcttaaaaatttggataaaatgttaaaaaaaattggagacaagcgaacatggttgctcatactttaactag 5594302  T
Q  100 gacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg---gtttaatgataatagttaactttacttctgt--- 193  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| |||||||   | |||||||||||||||||||||||||||||       
T  5594303 gacggcatgttcttggactaatcaccgtattttttattcttatccttcttgtattaaatattgattgattaatgataatagttaactttacttctgtaaa 5594402  T
Q  194 --nnnnnnnnnnnnnnggattattttcacaagctttgttttaaactcggtgtaaataatcttgcttaacaagacaccttatttttagcatagcttatacc 291  Q
                    ||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5594403 aaaaaaaaaaaaaattggattgttttcaccagcattgttttaaactcggtgtaaataatcttgcttaacaagacaccttatttttagcatagcttatacc 5594502  T
Q  292 aacaa 296  Q
    |||||    
T  5594503 aacaa 5594507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 5609572 - 5609692
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||| ||| ||||| |||||||||||||| ||||||||  ||||||||||| ||||||||||||||||||| |||||    
T  5609572 gagacaagcgaacatggttgctcatacattagctagggcggcatgttcttgggctagtcactgtattttttattcttatccttcttgtattgaacattgg 5609671  T
Q  164 t---ttaatgataatagttaa 181  Q
    |   |||||||||||||||||    
T  5609672 ttgattaatgataatagttaa 5609692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 324 - 395
Target Start/End: Original strand, 5594535 - 5594606
Alignment:
Q  324 aaatcatgttaatataccaacaattttgtgtgttagaggagcttatcggatcctcactgataggccgcaccc 395  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5594535 aaatcatgttaatacaccaacaattttgtgtgttagaggagcttatcggatcctcactgataggccgcaccc 5594606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 4395391 - 4395511
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||||| |||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||| |    
T  4395391 gagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtcaccgtattttttattcttatccttcttgtattgaacattag 4395490  T
Q  164 t---ttaatgataatagttaa 181  Q
    |   |||| ||||||||||||    
T  4395491 ttgattaacgataatagttaa 4395511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 44527486 - 44527619
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccata-ttttttattattatccttcttgtattgaatattg 162  Q
    ||||||||||||||||| |||| |||||||||||||| |||| |||||||||  || ||||| || |||||||||||||||||| |||||||||| ||||    
T  44527486 gagacaagcgaacatggctgctcatactttaactagggcggcctgttcttgggttaatcaccgtatttttttattattatcctttttgtattgaacattg 44527585  T
Q  163 ---gtttaatgataatagttaactttacttctgt 193  Q
       | ||||||||||||||||| ||| |||||||    
T  44527586 cttgattaatgataatagttaaatttgcttctgt 44527619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 14485243 - 14485367
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||| ||||||| |||||| |||||||| ||||| |||| ||||||||  ||||| | ||||||||||||| |||||||||||||||||| ||||||    
T  14485243 gagacaaacgaacatagttgctcatactttagctagggcggcttgttcttgagctagtaatcatattttttattcttatccttcttgtattgattattgg 14485342  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   ||||||||||| |||||||||    
T  14485343 tagattaatgataatggttaacttt 14485367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 36733946 - 36734048
Alignment:
Q  87 atactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt---ttaatgataatagttaact 183  Q
    |||||||| ||||| |||| ||||||||| ||||||| | ||||||| ||| ||||||||||||||||||||||||||   |||||||||||||||||||    
T  36733946 atactttagctagggcggcctgttcttgggctagtcatcgtatttttaattcttatccttcttgtattgaatattggttgattaatgataatagttaact 36734045  T
Q  184 tta 186  Q
    |||    
T  36734046 tta 36734048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 48949678 - 48949554
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||||||||||||||| || |||  ||| ||||| | || ||||||||| ||||||||| ||||||||||| ||||||||||||||||||| | |||    
T  48949678 gagacaagcgaacatggttactcatagcttagctagggcagcctgttcttgggctagtcaccgtattttttattcttatccttcttgtattgaacactgg 48949579  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||| ||||||||||||||||    
T  48949578 ttgattaaagataatagttaacttt 48949554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 51113548 - 51113672
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||| ||||||||||||||||| |||  ||| ||||| || | |||||||||  |||||||| ||||||||||| |||| |||||||||||||||| |||    
T  51113548 gagagaagcgaacatggttgctcatagcttagctagggcgacctgttcttgggttagtcaccgtattttttattcttattcttcttgtattgaatactgg 51113647  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  51113648 ttgattaatgataatagttaacttt 51113672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 189
Target Start/End: Original strand, 25682884 - 25683012
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||||||| |||||||||| |||||||| |||||  |||||||||||||  |||||||| || |||| |||  |||| ||||| ||||||| ||| |    
T  25682884 gagacaagcgagcatggttgctcatactttagctagggaggcatgttcttgggttagtcaccgtacttttaattcctatctttcttatattgaacatttg 25682983  T
Q  164 t---ttaatgataatagttaactttactt 189  Q
    |   |||||||||||||||||||||||||    
T  25682984 ttgattaatgataatagttaactttactt 25683012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 2885463 - 2885580
Alignment:
Q  67 acaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatatttttt-attattatccttcttgtattgaatattggt- 164  Q
    ||||||||||||| ||||| |||||||| ||||| || | ||||||||| ||||||||| |||||||| ||| ||||| ||||||||||||| ||||||     
T  2885463 acaagcgaacatg-ttgctcatactttagctagggcgacctgttcttgggctagtcaccgtatttttttattcttatcattcttgtattgaacattggtt 2885561  T
Q  165 --ttaatgataatagttaa 181  Q
      |||||||||||||||||    
T  2885562 gattaatgataatagttaa 2885580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 24538723 - 24538845
Alignment:
Q  67 acaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccata-ttttttattattatccttcttgtattgaatattggt- 164  Q
    ||||||||||||| ||||| |||||||  |||||||  ||||||||| | |||||||||||| |||||| || |||||||||||||||| || ||| ||     
T  24538723 acaagcgaacatgattgctcatacttttgctaggacaacatgttcttcggctagtcaccatatttttttttttttatccttcttgtattaaacattagtt 24538822  T
Q  165 --ttaatgataatagttaacttt 185  Q
      |||||||||||||||||||||    
T  24538823 gattaatgataatagttaacttt 24538845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 66 - 185
Target Start/End: Original strand, 44602987 - 44603104
Alignment:
Q  66 gacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt- 164  Q
    |||||||||||||||| ||| ||||||     ||| |||| ||||||||| ||||||||||||||||||||| ||||||||||| ||||||| ||||||     
T  44602987 gacaagcgaacatggtggctcatactt-----agggcggcctgttcttgggctagtcaccatattttttattcttatccttcttatattgaacattggtt 44603081  T
Q  165 --ttaatgataatagttaacttt 185  Q
      ||||||||||||  |||||||    
T  44603082 gattaatgataataactaacttt 44603104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 190
Target Start/End: Complemental strand, 16816751 - 16816622
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||| ||| ||||||||||||| ||||||||  |||| || | | ||||||| ||||||||| ||||||||||  |||||| ||| |||||||| |||||    
T  16816751 gagagaagagaacatggttgctcatactttagttagggcgacttattcttgggctagtcaccgtattttttatccttatccatctcgtattgaacattgg 16816652  T
Q  164 t---ttaatgataatagttaactttacttc 190  Q
    |   ||||||||||||||||| ||| ||||    
T  16816651 ttgattaatgataatagttaaatttgcttc 16816622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 48166463 - 48166561
Alignment:
Q  67 acaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggtt 165  Q
    |||| |||||||| |||||  ||||||||||||  |||| |  |||||| ||||||||| ||| ||| ||| |||||||||||||||||||||||||||    
T  48166463 acaaacgaacatgattgctcgtactttaactagagcggcctactcttgggctagtcaccgtatctttgatttttatccttcttgtattgaatattggtt 48166561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 52109686 - 52109768
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatcctt 146  Q
    ||||||| | ||||| |||| | ||||||||  |||| || ||||||||||||||||||||| ||||||| ||| ||||||||    
T  52109686 gagacaaacaaacatagttgttcatactttagatagggcgacatgttcttggactagtcaccgtatttttaattcttatcctt 52109768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 17371681 - 17371750
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttt 133  Q
    |||||||||||| ||||| ||| |||| ||| ||||| |||||||||||||  ||||||||| |||||||    
T  17371681 gagacaagcgaatatggtcgctcataccttagctagggcggcatgttcttgagctagtcaccgtattttt 17371750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 21031382 - 21031483
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||| ||||| ||| |||| | ||| | || |||| ||||  |||| ||| ||| ||||||| |||||||||| |||||||| |||||    
T  21031382 gagacaagcgaacatgattgctcatagtttagccagggcagcctgtttttgggttagttaccgtatgttttattcttatccttctcgtattgaacattgg 21031481  T
Q  164 tt 165  Q
    ||    
T  21031482 tt 21031483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 3297085 - 3297034
Alignment:
Q  133 ttattattatccttcttgtattgaatattggt---ttaatgataatagttaa 181  Q
    ||||| ||||||||||||||||||| ||||||   |||||||||||||||||    
T  3297085 ttattcttatccttcttgtattgaacattggttgattaatgataatagttaa 3297034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 63 - 190
Target Start/End: Original strand, 21321762 - 21321892
Alignment:
Q  63 agagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg 162  Q
    |||||||||||| |||||||||| |||||||| ||||| |||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  21321762 agagacaagcgatcatggttgctcatactttagctagggcggcctgttcttgggctagtcaccgtattttttattcttatccttcttgtattgaacattg 21321861  T
Q  163 gt---ttaatgataatagttaactttacttc 190  Q
    ||   ||||||||||||||||||||||||||    
T  21321862 gttgattaatgataatagttaactttacttc 21321892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 44936035 - 44935912
Alignment:
Q  65 agacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg-- 162  Q
    ||||||||||||||||||||| ||| |||| ||| ||||||||||||||||  |||||||| |||||||| || ||||||||||||||||||||||||      
T  44936035 agacaagcgaacatggttgctcatagtttagctatgacggcatgttcttgggttagtcaccgtattttttttttttatccttcttgtattgaatattgat 44935936  T
Q  163 -gtttaatgataatagttaacttt 185  Q
     | |||||||||||||||||||||    
T  44935935 tgattaatgataatagttaacttt 44935912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 2065086 - 2065210
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||| |||||||||||||| |||||||| |||||   |||||||||||| ||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  2065086 gagacaaacgaacatggttgctcatactttagctagggtagcatgttcttgggctagtcaccgtattttttattcttatccttcttgtattgaacattgg 2065185  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   || ||||||||| ||||||||    
T  2065186 ttgattgatgataataattaacttt 2065210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 32577002 - 32576878
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||||| | || ||||||||| ||||||||  |||||||  || ||||||||||||||||||| |||||    
T  32577002 gagacaagcgaacatggttgctcatactttagctagggcagcctgttcttgggctagtcactgtatttttgtttcttatccttcttgtattgaacattgg 32576903  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  32576902 ttgattaatgataatagttaacttt 32576878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 49951546 - 49951668
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||||| |||| ||||||||| |||||||   ||||||||||| |||||||| |||||||||| ||| |    
T  49951546 gagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtcattgtattttttattcttatccttattgtattgaacattag 49951645  T
Q  164 t---ttaatgataatagttaact 183  Q
    |   |||||||||||||||||||    
T  49951646 ttgattaatgataatagttaact 49951668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 51259483 - 51259359
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||  ||| ||||| |||| | || |||| ||||||||| |||||||||||||||||||| |||||||||| | |||    
T  51259483 gagacaagcgaacatggttgctcatagcttagctagggcggcctatttttgggctagtcaccgtattttttattattatcctttttgtattgaaaactgg 51259384  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  51259383 ttgattaatgataatagttaacttt 51259359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 26422546 - 26422431
Alignment:
Q  74 aacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt---ttaatg 170  Q
    |||||||||||| |||||||||||| | |||| | ||||||| ||||||||| ||||||| ||| |||| |||||||||||||| ||||||   ||||||    
T  26422546 aacatggttgctcatactttaactacggcggcctattcttgggctagtcaccgtatttttaattcttattcttcttgtattgaacattggttgattaatg 26422447  T
Q  171 ataatagttaacttta 186  Q
    ||||||||||||||||    
T  26422446 ataatagttaacttta 26422431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 28537740 - 28537612
Alignment:
Q  65 agacaagcgaacatggttgcttatactttaa--ctaggacggcatgttcttggactagtcaccatatttttt--attattatccttcttgtattgaatat 160  Q
    ||||||||||||||||||||| ||| | ||   ||||| |||| ||| ||||||||||||||||||||||||  ||| ||||||||||| ||||||||||    
T  28537740 agacaagcgaacatggttgctcatagtatatagctagggcggcctgtccttggactagtcaccatattttttttattcttatccttcttatattgaatat 28537641  T
Q  161 tggt---ttaatgataatagttaacttta 186  Q
    ||||   ||||||||||||||||||||||    
T  28537640 tggttgattaatgataatagttaacttta 28537612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 18442101 - 18441981
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||| |||| ||||||||| ||| |||| ||||| |||| ||||||||| ||||||||| ||||||| ||| ||||||||||||||||||| |||||    
T  18442101 gagacaaacgaaaatggttgctcatattttagctagggcggcctgttcttgggctagtcaccgtatttttaatttttatccttcttgtattgaacattgg 18442002  T
Q  164 t---ttaatgataatagttaa 181  Q
    |   ||| |||||||||||||    
T  18442001 ttcattattgataatagttaa 18441981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 28426416 - 28426540
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||| |  ||| || |||||| ||||||||  ||||||| ||| |||||||||||||||| || |||||    
T  28426416 gagacaagcgaacatggttgctcatactttagctaaggtggcctgctcttgggctagtcactgtatttttaattcttatccttcttgtattaaacattgg 28426515  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  28426516 ttgattaatgataatagttaacttt 28426540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 41835265 - 41835142
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||||||||||||||| || ||| ||||  |||| |||| ||||||||| |||||||| |||||||||||| ||||| ||||||||||| | |||||    
T  41835265 gagacaagcgaacatggttcctcatagtttagatagggcggcctgttcttgggctagtcactatattttttattcttatctttcttgtattg-acattgg 41835167  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  41835166 ttgattaatgataatagttaacttt 41835142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 49119354 - 49119230
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||| |  ||| || |||||| ||||||||  ||||||| ||| |||||||||||||||| || |||||    
T  49119354 gagacaagcgaacatggttgctcatactttagctaaggtggcctgctcttgggctagtcactgtatttttaattcttatccttcttgtattaaacattgg 49119255  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  49119254 ttgattaatgataatagttaacttt 49119230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 90 - 185
Target Start/End: Complemental strand, 10575377 - 10575279
Alignment:
Q  90 ctttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt---ttaatgataatagttaacttt 185  Q
    ||||| ||||| |||| |||| |||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||   |||||||||||||||||||||    
T  10575377 ctttagctagggcggcctgtttttgggctagtcaccatatttttgattcttatccttcttgtattgaacattggttaattaatgataatagttaacttt 10575279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 66 - 185
Target Start/End: Complemental strand, 51734924 - 51734802
Alignment:
Q  66 gacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt- 164  Q
    |||||| ||||||||||||| |||||||| ||||| |||| ||||||||| ||| | ||| ||| ||| ||| |||||||| |||||||||| ||||||     
T  51734924 gacaagtgaacatggttgctcatactttagctagggcggcctgttcttgggctaattaccgtatctttgattcttatcctttttgtattgaacattggtt 51734825  T
Q  165 --ttaatgataatagttaacttt 185  Q
      |||||||||||||||||||||    
T  51734824 gattaatgataatagttaacttt 51734802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 6754029 - 6753949
Alignment:
Q  107 tgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt---ttaatgataatagttaacttt 185  Q
    ||||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||||||   |||||||||||||||||||||    
T  6754029 tgttcttgg-ctagtcaccgtattttttattcttatccttcttgtattgaacattggttgattaatgataatagttaacttt 6753949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 37245806 - 37245684
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||| |||||||||||||| |||||||| ||||| |||  ||||||||| |||||||||  |||||| | | ||||||||||||||||| | ||| |    
T  37245806 gagacaatcgaacatggttgctcatactttagctagggcggtctgttcttgggctagtcaccgcatttttaactcttatccttcttgtattgcacattag 37245707  T
Q  164 tttaatgataatagttaacttta 186  Q
    || | | || |||||||||||||    
T  37245706 ttgattaatgatagttaacttta 37245684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 183
Target Start/End: Complemental strand, 29655620 - 29655498
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg- 162  Q
    |||||||||||||||||||||| |||||||| ||||| || | ||||||| | ||| |||||  |||||||||| ||||| ||||| ||||||| ||||     
T  29655620 gagacaagcgaacatggttgctcatactttagctagggcgacctgttctttggctaatcaccgcattttttattcttatcattcttttattgaacattga 29655521  T
Q  163 --gtttaatgataatagttaact 183  Q
      | ||||| |||||||||||||    
T  29655520 ttgattaataataatagttaact 29655498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 184
Target Start/End: Complemental strand, 47226282 - 47226163
Alignment:
Q  66 gacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt- 164  Q
    ||||||| |||||| ||||||||| |  ||||||| || ||| ||||||| ||| ||||| ||||||||||| ||||| || |||||||||| ||||||     
T  47226282 gacaagcaaacatgattgcttatagt--aactagggcgacattttcttgggctaatcaccgtattttttattcttatcttttttgtattgaacattggtt 47226185  T
Q  165 --ttaatgataatagttaactt 184  Q
      ||||||||||||||||||||    
T  47226184 gattaatgataatagttaactt 47226163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 186
Target Start/End: Complemental strand, 24989889 - 24989763
Alignment:
Q  63 agagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg 162  Q
    |||||||| |||||| |||||||||||||||| |||||  |  ||||| |||  ||| ||||| || |||||||| |||| ||| |||||||||| ||||    
T  24989889 agagacaaacgaacacggttgcttatactttatctagggtgatatgtttttgagctaatcaccgtactttttattcttattctttttgtattgaacattg 24989790  T
Q  163 ---gtttaatgataatagttaacttta 186  Q
       | ||||||||||||||||||||||    
T  24989789 attgattaatgataatagttaacttta 24989763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 43840276 - 43840150
Alignment:
Q  67 acaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaa---tattgg 163  Q
    |||| |||||||||||| | |||||||||||||| | |  |||||||| | || ||| | ||||||||||| ||||| ||| |||||||||   |||| |    
T  43840276 acaaacgaacatggttgttcatactttaactagggcagtctgttcttgaattaatcatcgtattttttattcttatctttcatgtattgaaaattatttg 43840177  T
Q  164 tttaatgataatagttaactttacttc 190  Q
     |||| |||||||||||||||||||||    
T  43840176 attaacgataatagttaactttacttc 43840150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 55735251 - 55735368
Alignment:
Q  67 acaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt-- 164  Q
    |||||| || ||||||||| ||| |||| ||||| |||  |||| |||  ||| ||||||||||||| ||| | ||||||||||||||||| ||||||      
T  55735251 acaagcaaatatggttgctcatagtttagctagggcggtctgtttttgatctaatcaccatatttttaattctcatccttcttgtattgaacattggttg 55735350  T
Q  165 -ttaatgataatagttaa 181  Q
     |||||||||||||||||    
T  55735351 attaatgataatagttaa 55735368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 56065866 - 56065956
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtatt 154  Q
    |||||||||||||||||||||| |||  ||| ||||| |||| | |  |||| ||||||||| ||||||||||| |||| |||||||||||    
T  56065866 gagacaagcgaacatggttgctcatagcttagctagggcggcctatatttgggctagtcaccgtattttttattcttattcttcttgtatt 56065956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 8754417 - 8754299
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaa---tat 160  Q
    ||||||||||||||||||||||  |||||||  |||  |||  ||||||| |  |||||||| ||||||||||| ||||  |||||||||| ||   |||    
T  8754417 gagacaagcgaacatggttgctcgtactttagatagagcggtctgttctttggatagtcaccgtattttttattcttatttttcttgtattcaacattat 8754318  T
Q  161 tggtttaatgataatagtt 179  Q
    | | |||||||||||||||    
T  8754317 ttgattaatgataatagtt 8754299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 155
Target Start/End: Original strand, 23095447 - 23095538
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattg 155  Q
    |||||||||||||||| || || ||| |||| |||||  ||| ||||||||| |||||||||  |||||| ||| ||||| || ||||||||    
T  23095447 gagacaagcgaacatgattactcatattttagctagggtggcctgttcttgggctagtcaccgcatttttaattcttatcatttttgtattg 23095538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 185
Target Start/End: Original strand, 3347351 - 3347462
Alignment:
Q  77 atggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt---ttaatgata 173  Q
    ||||||||| ||| |||| ||||| ||| |||||| ||||||||||  | ||||||||||| ||||  ||||| ||||| | ||| ||   |||||||||    
T  3347351 atggttgctcatattttagctagggcgggatgttcatggactagtcctcgtattttttattcttatatttcttatattggacattagttgattaatgata 3347450  T
Q  174 atagttaacttt 185  Q
    || |||||||||    
T  3347451 atcgttaacttt 3347462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 34926243 - 34926172
Alignment:
Q  121 tcaccatattttttattattatccttcttgtattgaatattggt---ttaatgataatagttaactttactt 189  Q
    ||||| ||||||||||| ||||| || ||| |||||||||||||   || ||||||||| ||||||||||||    
T  34926243 tcaccgtattttttattcttatcatttttgcattgaatattggttgatttatgataataattaactttactt 34926172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 13415256 - 13415380
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||||| |||  ||||||||| ||||||||| ||||||||||| ||||||||||||||||||| |||||    
T  13415256 gagacaagcgaacatggttgctcatactttagctagggcggtctgttcttgggctagtcaccgtattttttatttttatccttcttgtattgaacattgg 13415355  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  13415356 ttgattaatgataatagttaacttt 13415380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 40588684 - 40588560
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||| ||||  |||||||| ||||| |||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||| |    
T  40588684 gagacaagcgaacatgattgcacatactttagctagggcggcctgttcttgggctagtcaccgtattttttatttttatccttcttgtattgaacattag 40588585  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  40588584 ttgattaatgataatagttaacttt 40588560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 478010 - 477886
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||| ||| ||||| || | ||||||||| ||| ||||| ||||||||||| ||||||||||||||||||| |||||    
T  478010 gagacaagcgaacatggttgctcataccttagctagggcgtcctgttcttgggctaatcaccgtattttttattcttatccttcttgtattgaacattgg 477911  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||| ||||||||    
T  477910 ttgattaatgataataattaacttt 477886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 11870497 - 11870622
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||||| |  | ||||||||| ||| ||||||||||||||||| ||||||| ||||||||||| ||| |    
T  11870497 gagacaagcgaacatggttgctcatactttagctagggcaacctgttcttgggctaatcaccatattttttattcttatcctacttgtattgaacatttg 11870596  T
Q  164 t---ttaatgataatagttaacttta 186  Q
    |   ||||| ||||||||||||||||    
T  11870597 ttggttaataataatagttaacttta 11870622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 598191 - 598071
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||| | |||  ||||||| | ||||||||| ||||||||||| ||||||||||| ||||||| |||||    
T  598191 gagacaagcgaacatggttgctcatactttagctaaggcggtctgttcttaggctagtcaccgtattttttattcttatccttcttatattgaacattgg 598092  T
Q  164 t---ttaatgataatagttaa 181  Q
    |   |||||||||||||||||    
T  598091 ttgattaatgataatagttaa 598071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 9497011 - 9497090
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatc 143  Q
    ||||||||||||||| ||||||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||| |||||    
T  9497011 gagacaagcgaacatagttgcttatactttagctagggcggcctgttcttggactagtcaccgtattttttattcttatc 9497090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 36194575 - 36194451
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||||  |||||||||||| ||| |||| |||||  | ||||||||||  ||||||||| ||||||| ||| ||||||||||||||||||| |||||    
T  36194575 gagacaagaaaacatggttgctcatagtttagctagggtgacatgttcttgagctagtcaccgtatttttaattcttatccttcttgtattgaacattgg 36194476  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  36194475 ttgattaatgataatagttaacttt 36194451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 33642718 - 33642625
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaa 157  Q
    |||||||||||||||||||| | |||||||| |||||  ||  ||||||||| ||||||||| ||||||||||| ||||| |||||||||||||    
T  33642718 gagacaagcgaacatggttgttcatactttagctagggtggtctgttcttgggctagtcaccgtattttttattcttatcattcttgtattgaa 33642625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 186
Target Start/End: Complemental strand, 185546 - 185425
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||||||||||| |||| | ||| |||| ||||| || | || ||||||| ||||||||  |||||| ||| ||||||||||||||||| | |||||    
T  185546 gagacaagcgaacatagttggtcatagtttagctagggcgacctgatcttgga-tagtcaccgcatttttaattcttatccttcttgtattgcacattgg 185448  T
Q  164 tttaatgataatagttaacttta 186  Q
    || | | || |||||||||||||    
T  185447 ttaattaatgatagttaacttta 185425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 185
Target Start/End: Original strand, 28315345 - 28315463
Alignment:
Q  69 aagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaa---tattggtt 165  Q
    |||| |||||||||||| ||| |||| ||||| |||  ||||| ||| |||||| || | ||||||||| |||||||||||||||||||   || | | |    
T  28315345 aagcaaacatggttgctcatattttagctagggcggtctgttcctgggctagtcgccgt-ttttttatttttatccttcttgtattgaacattaattgat 28315443  T
Q  166 taatgataatagttaacttt 185  Q
    ||||||||||||||||||||    
T  28315444 taatgataatagttaacttt 28315463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 7127456 - 7127536
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatcc 144  Q
    |||||||||||||||| ||||| |||||||| ||||| |||  ||||||||| |||||||||  |||||| ||| ||||||    
T  7127456 gagacaagcgaacatgattgctcatactttagctagggcggtctgttcttgggctagtcaccgcatttttaattcttatcc 7127536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 37712331 - 37712398
Alignment:
Q  95 actaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg 162  Q
    |||||| ||||||| ||||| | ||||||| ||||||||||||||||||||| || ||||||| ||||    
T  37712331 actagggcggcatgctcttgaattagtcactatattttttattattatcctttttatattgaacattg 37712398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 153
Target Start/End: Complemental strand, 8451077 - 8450988
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtat 153  Q
    |||||||||||||||||||| | ||||| ||  |||| ||||    |||| | ||||||||| ||||||||||  |||||||||||||||    
T  8451077 gagacaagcgaacatggttgttcatactctagttagggcggccctgtcttaggctagtcaccgtattttttatccttatccttcttgtat 8450988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 44481320 - 44481444
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||||| |||| ||||||||| ||||||||||||||||||||| |||||| |||||||||||| || ||    
T  44481320 gagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtcaccatattttttattcttatccatcttgtattgaacatggg 44481419  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  44481420 ttgattaatgataatagttaacttt 44481444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 17877631 - 17877755
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||||||| |||||||||| ||||||||  |||||||||||||| |||| ||||||||| ||||||||||| ||||||||||||||||||| ||||     
T  17877631 gagacaagcgaccatggttgctcatactttaggtaggacggcatgttattgggctagtcaccgtattttttatttttatccttcttgtattgaacattga 17877730  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  17877731 ttaattaatgataatagttaacttt 17877755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 24139244 - 24139364
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||||| |||| ||||||||| |||||||||  |||||||||| ||||||||||||||||||| |||||    
T  24139244 gagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtcaccgcattttttattcttatccttcttgtattgaacattgg 24139343  T
Q  164 t---ttaatgataatagttaa 181  Q
    |   |||||||||||||||||    
T  24139344 ttgattaatgataatagttaa 24139364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 9328556 - 9328432
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||| |||| | | ||||||| ||||||||| ||||||| ||| ||||||||||||||||||| |||||    
T  9328556 gagacaagcgaacatggttgctcatactttagctacgacgtcctattcttgggctagtcaccgtatttttaatttttatccttcttgtattgaacattgg 9328457  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  9328456 ttgattaatgataatagttaacttt 9328432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 16732166 - 16732286
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||||| |||  ||||||||| ||||||||| ||||||||||| |||||||| |||||||||| |||||    
T  16732166 gagacaagcgaacatggttgctcatactttagctagggcggactgttcttgggctagtcaccgtattttttattcttatcctttttgtattgaacattgg 16732265  T
Q  164 t---ttaatgataatagttaa 181  Q
    |   |||||||||||||||||    
T  16732266 ttgattaatgataatagttaa 16732286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 17710300 - 17710420
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||||| |||  ||||||||| ||||||||| ||||||||||| |||||||| |||||||||| |||||    
T  17710300 gagacaagcgaacatggttgctcatactttagctagggcggactgttcttgggctagtcaccgtattttttattcttatcctttttgtattgaacattgg 17710399  T
Q  164 t---ttaatgataatagttaa 181  Q
    |   |||||||||||||||||    
T  17710400 ttgattaatgataatagttaa 17710420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 29200909 - 29200786
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||| |||||||||||||| |||||||| ||||| |||  ||||||||| ||||||||  ||||||||||| |||| |||||||||||||| |||||    
T  29200909 gagacaaacgaacatggttgctcatactttagctagggcggtctgttcttgggctagtcactgtattttttattcttat-cttcttgtattgaacattgg 29200811  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  29200810 ttgattaatgataatagttaacttt 29200786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 184
Target Start/End: Complemental strand, 30493564 - 30493441
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||| | |||||||||| | |||||||| ||||| |||  ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||| |    
T  30493564 gagacaaccaaacatggttgttcatactttagctagggcggtctgttcttgggctagtcaccgtattttttattcttatccttcttgtattgaatatttg 30493465  T
Q  164 t---ttaatgataatagttaactt 184  Q
    |   ||| ||||||||||||||||    
T  30493464 ttgattactgataatagttaactt 30493441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 24251672 - 24251793
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||||| |||| ||||||||  ||||||||| ||||||| ||| |||||   ||||||||||| |||||    
T  24251672 gagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgagctagtcaccgtatttttaattcttatc---cttgtattgaacattgg 24251768  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  24251769 ttgattaatgataatagttaacttt 24251793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 16098723 - 16098846
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccata---ttttttattattatccttcttgtattgaatat 160  Q
    |||||||||||||||||||||| ||| |||| ||||| |||| ||||| ||  ||||||||| ||   ||||||||||||||||||||||||||||| ||    
T  16098723 gagacaagcgaacatggttgctcatattttagctagggcggcctgttcatgagctagtcaccgtatttttttttattattatccttcttgtattgaacat 16098822  T
Q  161 tggt---ttaatgataatagttaa 181  Q
    ||||   |||||||||||||||||    
T  16098823 tggttgattaatgataatagttaa 16098846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 3601885 - 3602009
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||| |||||||||||||| ||| |||| ||||| |||  |||| |||| || |||||| ||||||||||| |||||||||||| |||||| |||||    
T  3601885 gagacaatcgaacatggttgctcatagtttagctagggcgggctgttgttgggcttgtcaccgtattttttattcttatccttcttgcattgaacattgg 3601984  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  3601985 ttgattaatgataatagttaacttt 3602009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 30824448 - 30824326
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||| ||||||||||||||||| |||| |||| ||||  | | ||||||||| ||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  30824448 gagataagcgaacatggttgctcataccttaattaggtggtc-tgttcttgggctagtcaccatattttttattcttatctttcttgtattgaacattgg 30824350  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||| ||||||||||    
T  30824349 ttgattaatgataa-agttaacttt 30824326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 33224514 - 33224390
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||| ||||| |||  ||| ||||| | || ||||||||| ||||||||| ||||||| ||| ||||| ||||||||||||| | |||    
T  33224514 gagacaagcgaacatgattgctcataacttatctagggcagcctgttcttgggctagtcaccgtatttttgattcttatcattcttgtattgaacactgg 33224415  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  33224414 ttgattaatgataatagttaacttt 33224390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 47580108 - 47580231
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| || ||| |  || |||||| ||||||||| ||||||||| || |||||||| | ||||||||||||||||| |||||    
T  47580108 gagacaagcgaacatggttgctcattcttcagttaagacggcctgttcttgggctagtcaccgta-tttttattctcatccttcttgtattgaacattgg 47580206  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||| ||||||||    
T  47580207 ttgattaatgataataattaacttt 47580231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 22289474 - 22289567
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaa 157  Q
    |||||||||||||||||||||| |||  ||| ||||| |||| |||||||| |||||| ||| ||||||||||| ||||||||||| |||||||    
T  22289474 gagacaagcgaacatggttgctcatagcttagctagggcggcctgttcttgaactagttaccgtattttttatttttatccttcttatattgaa 22289567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 1581849 - 1581974
Alignment:
Q  64 gagacaagcgaacatggt-tgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg 162  Q
    |||||||||||||||||  |||| ||| |||| ||| |  ||| | || |||| ||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  1581849 gagacaagcgaacatggggtgctcatagtttagctaaggaggcttatttttgggctagtcaccgtattttttattcttatccttcttgtattgaacattg 1581948  T
Q  163 gt---ttaatgataatagttaacttt 185  Q
    ||   |||||||||||||||||||||    
T  1581949 gttgattaatgataatagttaacttt 1581974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 186
Target Start/End: Original strand, 3275266 - 3275393
Alignment:
Q  63 agagacaagcgaacatggttgcttatactttaa-ctaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaa---t 158  Q
    ||||||||||||||||||||| | |||  |||| ||||| |||| ||||||| | ||||||||| ||||||| ||| ||||||||||| |||| ||   |    
T  3275266 agagacaagcgaacatggttgatcatagcttaagctagggcggcctgttcttaggctagtcaccgtatttttaatttttatccttcttatattaaacagt 3275365  T
Q  159 attggtttaatgataatagttaacttta 186  Q
     || | |||||||||||| |||||||||    
T  3275366 gtttgattaatgataataattaacttta 3275393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 64 - 190
Target Start/End: Original strand, 88792 - 88921
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||||| |||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||||  |||||    
T  88792 gagacaagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtcaccgtattttttattcttatccttcttgtattgagcattgg 88891  T
Q  164 t---ttaatgataatagttaactttacttc 190  Q
    |   ||||||||||||||||| ||| ||||    
T  88892 ttgattaatgataatagttaattttgcttc 88921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 34695858 - 34695734
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||||| |||| ||||||||| || ||||||  |||||||||| ||||||||||||||||||| |||||    
T  34695858 gagacaagcgaacatggttgctcatactttagctagggcggcttgttcttgggcttgtcaccgcattttttattcttatccttcttgtattgaacattgg 34695759  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  34695758 ttgattaatgataatagttaacttt 34695734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 34718270 - 34718146
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||||| |||| ||||||||| || ||||||  |||||||||| ||||||||||||||||||| |||||    
T  34718270 gagacaagcgaacatggttgctcatactttagctagggcggcttgttcttgggcttgtcaccgcattttttattcttatccttcttgtattgaacattgg 34718171  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  34718170 ttgattaatgataatagttaacttt 34718146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 64 - 190
Target Start/End: Complemental strand, 12130592 - 12130463
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| |||||| ||| | ||||||  ||||| ||| ||||||||||| ||||||||||||||||||| |||||    
T  12130592 gagacaagcgaacatggttgctcatactttagctaggagggcctattcttgagctagttaccgtattttttattcttatccttcttgtattgaacattgg 12130493  T
Q  164 t---ttaatgataatagttaactttacttc 190  Q
    |   ||||||||||||||||||||| ||||    
T  12130492 ttgattaatgataatagttaactttgcttc 12130463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 64 - 186
Target Start/End: Original strand, 9710188 - 9710313
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||| |||||  ||||||||| ||||| ||| |||||||  || ||||||||||||||||||| |||||    
T  9710188 gagacaagcgaacatggttgctcatactttagctaagacggtctgttcttgggctagtaaccgtatttttagttcttatccttcttgtattgaacattgg 9710287  T
Q  164 t---ttaatgataatagttaacttta 186  Q
    |   ||||||||||||||||||||||    
T  9710288 ttgattaatgataatagttaacttta 9710313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 186
Target Start/End: Original strand, 25552377 - 25552503
Alignment:
Q  63 agagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg 162  Q
    ||||||||| ||||||||||||| ||||||||  ||||| | | ||||||| |  |||||||| ||||||||||| ||||||||||| ||||||| ||||    
T  25552377 agagacaagtgaacatggttgctcatactttagttaggaagacctgttcttaggttagtcaccgtattttttattcttatccttcttatattgaacattg 25552476  T
Q  163 gt---ttaatgataatagttaacttta 186  Q
    ||   ||||||||||||||||| ||||    
T  25552477 gttgattaatgataatagttaaattta 25552503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 64 - 190
Target Start/End: Complemental strand, 11292018 - 11291890
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||| |||||||||| ||||| |||||||| ||||| |||| ||||||||| ||||||||| ||||||||||| ||||||||| |||||| || |||||    
T  11292018 gagacgagcgaacatgtttgctcatactttagctaggtcggcttgttcttgggctagtcaccgtattttttattcttatccttcctgtatt-aacattgg 11291920  T
Q  164 t---ttaatgataatagttaactttacttc 190  Q
    |   ||||||||||||  ||||||| ||||    
T  11291919 ttgattaatgataataaataactttgcttc 11291890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 14827315 - 14827436
Alignment:
Q  67 acaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt-- 164  Q
    |||| |||||||||||||| |||||||| ||||| || ||| ||||||| |||||||||  ||||| |||| |||| |||||||||||||| ||| ||      
T  14827315 acaaacgaacatggttgctcatactttatctagggcgacatattcttgggctagtcaccgcattttctattcttattcttcttgtattgaacattagttg 14827414  T
Q  165 -ttaatgataatagttaacttt 185  Q
     ||||||||| |||||||||||    
T  14827415 attaatgatattagttaacttt 14827436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 190
Target Start/End: Complemental strand, 35158797 - 35158667
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||||||||||| |||||| ||| |||  ||||| |||| ||||||||| |||| |||| ||||||||||| |||| ||| || ||||||| |||||    
T  35158797 gagacaagcgaacatagttgctcatagtttcgctagggcggcctgttcttgggctaggcaccgtattttttattcttatgctttttatattgaacattgg 35158698  T
Q  164 t----ttaatgataatagttaactttacttc 190  Q
    |    |||||||||||| |||||||| ||||    
T  35158697 tttgattaatgataatatttaactttgcttc 35158667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 22845761 - 22845862
Alignment:
Q  67 acaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggttt 166  Q
    ||||||||||||  ||||| |||||||| ||||| || | |||||||   ||||||||||||||||||||| |||||||||||||||||||  ||||||     
T  22845761 acaagcgaacat--ttgctcatactttagctagggcgacctgttcttaagctagtcaccatattttttattcttatccttcttgtattgaactttggttg 22845858  T
Q  167 aatg 170  Q
    ||||    
T  22845859 aatg 22845862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 1417902 - 1417820
Alignment:
Q  107 tgttcttggactagtcaccatatttttt-attattatccttcttgtattgaatattg---gtttaatgataatagttaacttt 185  Q
    ||||||||| ||||||||| |||||||| ||| ||||||||||||||||||| ||||   | |||||||||||||||||||||    
T  1417902 tgttcttgggctagtcaccgtatttttttattcttatccttcttgtattgaacattgattgattaatgataatagttaacttt 1417820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 43293919 - 43293966
Alignment:
Q  107 tgttcttggactagtcaccatattttttattattatccttcttgtatt 154  Q
    ||||||||||||||||||| ||||||||||  ||||||||||||||||    
T  43293919 tgttcttggactagtcaccgtattttttatctttatccttcttgtatt 43293966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 162
Target Start/End: Complemental strand, 13109823 - 13109728
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg 162  Q
    ||||||| ||||||| |||| | |||||||| ||||| || ||||||   ||  |||||||| ||||||||| | ||||||||||||||||||| ||||    
T  13109823 gagacaaacgaacatagttgttcatactttagctagggcgacatgtt---ggtttagtcaccgtattttttactcttatccttcttgtattgaacattg 13109728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 18344248 - 18344176
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttat 136  Q
    |||| ||||||||||||||||| |||||||| ||||| |||| |||| || ||||| ||| | ||||||||||    
T  18344248 gagataagcgaacatggttgctcatactttagctagggcggcctgttgttagactaatcatcgtattttttat 18344176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 26046921 - 26047045
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||||| |||| | ||||||| ||||||||| ||||||| ||| ||||||||||| |||| ||||||||    
T  26046921 gagacaagcgaacatggttgctcatactttagctagggcggcttattcttgggctagtcaccgtatttttaattcttatccttcttatattaaatattgg 26047020  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  26047021 ttgattaatgataatagttaacttt 26047045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 27608857 - 27608733
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||  ||| ||||  |||| ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||| |||    
T  27608857 gagacaagcgaacatggttgctcatagcttagctagagcggcctgttcttgggctagtcaccgtattttttattcttatccttcttgtattgaatactgg 27608758  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  27608757 ttaattaatgataatagttaacttt 27608733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 34497326 - 34497202
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||  ||| ||||| |||| ||||||||| ||||||||| ||||||||||| ||||||||| ||||||||| | |||    
T  34497326 gagacaagcgaacatggttgctcatagcttagctagggcggcctgttcttgggctagtcaccgtattttttatttttatccttcatgtattgaacactgg 34497227  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  34497226 ttgattaatgataatagttaacttt 34497202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 64 - 162
Target Start/End: Original strand, 53497265 - 53497363
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg 162  Q
    ||||||||||||||||| |||| |||||||| ||||| | || ||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||    
T  53497265 gagacaagcgaacatggctgctcatactttagctagggcagcctgttcttgggctagtcaccgtattttttattattatccttcttgtattgaacattg 53497363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 55213558 - 55213682
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||| |||||||||||||||||||||||||||||||| ||||  |||||||| ||||||||  ||||||||||| |||| |||||| ||||||| |||||    
T  55213558 gagaaaagcgaacatggttgcttatactttaactagggcggccggttcttgggctagtcactgtattttttattcttattcttcttatattgaacattgg 55213657  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||| ||||||||    
T  55213658 ttgattaatgataataattaacttt 55213682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 42340231 - 42340111
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| | ||||||  |||| |||| ||||||| | ||||||||| ||||||| ||| ||||||||||||||||||| |||||    
T  42340231 gagacaagcgaacatggttgctcacactttagatagggcggcctgttctttggctagtcaccgtatttttaatttttatccttcttgtattgaagattgg 42340132  T
Q  164 t---ttaatgataatagttaa 181  Q
    |   | |||||||||||||||    
T  42340131 ttgataaatgataatagttaa 42340111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 2615716 - 2615834
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||| |||||||||||||| |||||||||||||| || | ||||||||| ||||||||| || |||||||| | | | ||||||||||||| |||||    
T  2615716 gagacaaacgaacatggttgctcatactttaactagggcgacctgttcttgggctagtcaccgtaatttttattttaagcgttcttgtattgaacattgg 2615815  T
Q  164 t---ttaatgataatagtt 179  Q
    |   |||||||||||||||    
T  2615816 ttgattaatgataatagtt 2615834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 181
Target Start/End: Complemental strand, 647124 - 647004
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||| |||||||||||||| ||||||||  |||| |||| ||||||||||||| ||||| ||||||| | | ||||| ||||||||||||| |||||    
T  647124 gagacaaacgaacatggttgctcatactttagttagggcggcctgttcttggactaatcaccgtatttttgaattttatctttcttgtattgaacattgg 647025  T
Q  164 t---ttaatgataatagttaa 181  Q
    |   ||||| |||||||||||    
T  647024 ttgattaataataatagttaa 647004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 2121314 - 2121434
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| ||||||||  |||| |||  |||||||||  |||| ||| ||||||||||| ||||| ||||||||||| | |||||    
T  2121314 gagacaagcgaacatggttgctcatactttagttagggcggtctgttcttgggttagttaccgtattttttattcttatcattcttgtattgcacattgg 2121413  T
Q  164 t---ttaatgataatagttaa 181  Q
    |   || ||||||||||||||    
T  2121414 ttgattgatgataatagttaa 2121434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 55199744 - 55199832
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgta 152  Q
    |||||||||||||||||||||| |||  ||| ||| | |||| ||||||||  ||||| ||||||||||||||| ||||||||||||||    
T  55199744 gagacaagcgaacatggttgctcatagcttagctacggcggcctgttcttgcgctagtgaccatattttttattcttatccttcttgta 55199832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 31341668 - 31341555
Alignment:
Q  75 acatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt---ttaatga 171  Q
    ||||||||||| |||| |||  |||| | ||  |||||||| ||||||||| ||||||| ||| ||||||||||| ||||||| ||||||   |||||||    
T  31341668 acatggttgctcataccttagttagggcagccggttcttgggctagtcaccgtatttttgattcttatccttcttatattgaacattggttgattaatga 31341569  T
Q  172 taatagttaacttt 185  Q
    ||||||||||||||    
T  31341568 taatagttaacttt 31341555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 190
Target Start/End: Original strand, 48227601 - 48227730
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||||| || |||||| || |||||||| ||||| || | |||||||||  || || |||||||||||||| ||||| ||||||||||||| | |||    
T  48227601 gagacaagcaaatatggttcctcatactttagctagggcgacttgttcttgggttattcgccatattttttatttttatctttcttgtattgaacaatgg 48227700  T
Q  164 t---ttaatgataatagttaactttacttc 190  Q
    |   ||||||||||||||||| ||| ||||    
T  48227701 ttgattaatgataatagttaattttgcttc 48227730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 72 - 185
Target Start/End: Complemental strand, 19117666 - 19117550
Alignment:
Q  72 cgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt---ttaa 168  Q
    ||||||| |||||| |||  ||| ||||| |||| ||||||| | ||||||||| ||||||| ||| ||||||||||||||||||| | ||||   || |    
T  19117666 cgaacatagttgctcatagcttagctaggtcggcctgttcttaggctagtcaccgtatttttgattcttatccttcttgtattgaacactggttgattga 19117567  T
Q  169 tgataatagttaacttt 185  Q
    |||||||||||||||||    
T  19117566 tgataatagttaacttt 19117550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 24181788 - 24181887
Alignment:
Q  89 actttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg---gtttaatgataatagttaacttt 185  Q
    |||||| ||||| |||| |||||||||  |||||||||||||||| ||| |||||||| |||||||||| ||||   | ||||| |||||||||||||||    
T  24181788 actttagctagggcggcctgttcttgggttagtcaccatatttttaatttttatccttgttgtattgaacattgattgattaatcataatagttaacttt 24181887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 11020134 - 11020042
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaa 157  Q
    |||||||||||||||||||  | ||| |||| |||||||  | | | ||||| ||||||||  ||||||||||| |||| ||||||||||||||    
T  11020134 gagacaagcgaacatggttaatcatattttagctaggacaacctatccttgggctagtcactgtattttttattcttat-cttcttgtattgaa 11020042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 65 - 181
Target Start/End: Complemental strand, 15605947 - 15605828
Alignment:
Q  65 agacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt 164  Q
    ||||||||||||||||||||| || ||||| ||||| |||| | ||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||    
T  15605947 agacaagcgaacatggttgctcatgctttagctagggcggcttattcttgggctagtcaccatatttattattcttatccttcttgtattgaacattggt 15605848  T
Q  165 ---ttaatgataatagttaa 181  Q
       |||||||||||||||||    
T  15605847 taattaatgataatagttaa 15605828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 68 - 193
Target Start/End: Complemental strand, 11731619 - 11731491
Alignment:
Q  68 caagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt--- 164  Q
    |||||||||||||||||| |||||||| ||||| | || || |||||| ||||||||||||||||||||| |||| |||||||||||||| ||| ||       
T  11731619 caagcgaacatggttgctcatactttagctagggcagcctgctcttgggctagtcaccatattttttattcttattcttcttgtattgaacattcgttga 11731520  T
Q  165 ttaatgataatagttaactttacttctgt 193  Q
    |||||||||||||||| |||| |||||||    
T  11731519 ttaatgataatagttagctttgcttctgt 11731491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 14680395 - 14680496
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||| ||||||||||||||| |||||||||||||| |||| ||||||  | ||||||||| ||||||||||| | ||||||||||||||||| |||||    
T  14680395 gagacatgcgaacatggttgctcatactttaactagggcggcctgttctcaggctagtcaccgtattttttattttcatccttcttgtattgaacattgg 14680494  T
Q  164 tt 165  Q
    ||    
T  14680495 tt 14680496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 34104419 - 34104326
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaa 157  Q
    ||||||||| |||||||||||| |||  ||| ||| | |||||||||||||| ||||||||| ||||||||||| |||||||||| ||||||||    
T  34104419 gagacaagcaaacatggttgctcatagcttagctatggcggcatgttcttgggctagtcaccgtattttttattcttatccttctcgtattgaa 34104326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 21944581 - 21944457
Alignment:
Q  65 agacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt 164  Q
    |||||||||| ||| |||||| ||||||||  |||  | ||| |||||||  ||||||||| ||||||||||| ||||||||||||||||||| ||||||    
T  21944581 agacaagcgatcattgttgctcatactttagttagagcagcaggttcttgtgctagtcaccgtattttttattcttatccttcttgtattgaacattggt 21944482  T
Q  165 ---ttaatgataatagttaacttta 186  Q
       ||||||||||| ||||| ||||    
T  21944481 tgattaatgataattgttaatttta 21944457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 3101261 - 3101337
Alignment:
Q  112 ttggactagtcaccatattttttattattatccttcttgtattgaatattg--gtttaatgataatagttaacttta 186  Q
    |||| ||||||||| ||||||||||| |||||||| |||||||||| ||||  | ||||||||||||||||||||||    
T  3101261 ttgggctagtcaccgtattttttattcttatccttgttgtattgaacattgttgattaatgataatagttaacttta 3101337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 1992559 - 1992480
Alignment:
Q  109 ttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt---ttaatgataatagttaacttt 185  Q
    |||||| |||||||| ||||||||||||| |||||||||||  ||| |||||||||   ||||| |||||||||||||||    
T  1992559 ttcttgaactagtcatcatattttttattcttatccttcttagatttaatattggttgattaattataatagttaacttt 1992480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 19690392 - 19690333
Alignment:
Q  129 ttttttattattatccttcttgtattgaatattggt---ttaatgataatagttaacttt 185  Q
    ||||||||| |||| |||||||||||||| ||||||   |||||||||||||||||||||    
T  19690392 ttttttattcttattcttcttgtattgaacattggttgattaatgataatagttaacttt 19690333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 156
Target Start/End: Original strand, 27443166 - 27443258
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattga 156  Q
    |||| ||||||||||||||||| |||  ||| ||||| |||  ||||||||| ||||||||  ||||||| |||  |||||||||| ||||||    
T  27443166 gagagaagcgaacatggttgctcatagcttagctagggcggtctgttcttgggctagtcactgtatttttgattcatatccttcttctattga 27443258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 5542602 - 5542669
Alignment:
Q  66 gacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttt 133  Q
    |||||||||||||||||||| ||||  |  ||||| |||||| ||||||| ||||||||||| |||||    
T  5542602 gacaagcgaacatggttgctcatacacttgctagggcggcatattcttggtctagtcaccatgttttt 5542669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 63 - 185
Target Start/End: Complemental strand, 11375477 - 11375352
Alignment:
Q  63 agagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg 162  Q
    |||||||||||||||| |||||| |||||||| ||||| |||| ||||||||| ||| ||||| ||||||| ||| ||||||||||||||||||| ||||    
T  11375477 agagacaagcgaacatagttgctcatactttagctagggcggcctgttcttgggctattcaccgtatttttaatttttatccttcttgtattgaacattg 11375378  T
Q  163 gt---ttaatgataatagttaacttt 185  Q
    ||   |||||||||||| ||||||||    
T  11375377 gttgattaatgataataattaacttt 11375352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 25731041 - 25731161
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg- 162  Q
    |||| ||||||||||||||||| |||||||| ||||| |||| ||||||||| ||||||||  ||||||||||| ||||||||||||||||||| ||||     
T  25731041 gagataagcgaacatggttgctcatactttagctagggcggcctgttcttgggctagtcactgtattttttattcttatccttcttgtattgaacattgt 25731140  T
Q  163 --gtttaatgataatagttaa 181  Q
      | |||||||||||||||||    
T  25731141 ttgattaatgataatagttaa 25731161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 64 - 193
Target Start/End: Original strand, 27292667 - 27292798
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg- 162  Q
    |||||||||||||||||||||| |||||||| |||||  | ||||||||||| ||||||||| ||||||||||| ||||| ||||||||||||| ||||     
T  27292667 gagacaagcgaacatggttgctcatactttagctaggg-gacatgttcttgggctagtcaccgtattttttattcttatcattcttgtattgaacattgt 27292765  T
Q  163 --gtttaatgataatagttaactttacttctgt 193  Q
      | ||||||||||||||||| ||| |||||||    
T  27292766 ttgattaatgataatagttaaatttgcttctgt 27292798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 4268332 - 4268456
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccata----ttttttattattatccttcttgtattgaata 159  Q
    |||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||| ||    ||||||||||||||||||||||||||||  |    
T  4268332 gagacaagcgaacatggttgctcatactttatctagggcggcatgttcttgggctagtcaccgtattttttttttattattatccttcttgtattgagca 4268431  T
Q  160 ttg---gtttaatgataatagttaa 181  Q
    |||   | |||||||||||||||||    
T  4268432 ttgtttgattaatgataatagttaa 4268456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 64 - 190
Target Start/End: Original strand, 32632748 - 32632876
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||||||||||| |||||  |||||||| ||||| |||| ||||||||| ||||||||| ||||||||||| |||||||||||| |||||| |||||    
T  32632748 gagacaagcgaacatagttgcccatactttagctagg-cggcctgttcttgggctagtcaccgtattttttattcttatccttcttggattgaacattgg 32632846  T
Q  164 t---ttaatgataatagttaactttacttc 190  Q
    |   |||||||||||| |||||||| ||||    
T  32632847 ttgattaatgataataattaactttgcttc 32632876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 34652216 - 34652114
Alignment:
Q  65 agacaagcgaacatggttgct--tatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg 162  Q
    |||||||||||||||||||||  |||||||||||||||| ||| | |||||||  |||||||| ||||||||||| ||||| ||||||||||||||||||    
T  34652216 agacaagcgaacatggttgctcatatactttaactaggatggcttattcttgggttagtcaccgtattttttattcttatctttcttgtattgaatattg 34652117  T
Q  163 gtt 165  Q
    |||    
T  34652116 gtt 34652114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 20205188 - 20205312
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||||||| ||||| | || | ||||||| | ||||| | ||||||| ||| ||||||||||||||||||| |||||    
T  20205188 gagacaagcgaacatggttgctcatactttagctagggcagcctattcttgggccagtcaacgtatttttgattcttatccttcttgtattgaacattgg 20205287  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   |||||||||||||||||||||    
T  20205288 ttgattaatgataatagttaacttt 20205312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 22767227 - 22767103
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    ||||||| |||||||||||||| |||||||| ||| | |||||||||||||| ||||||||| ||||||| ||| |||| |||||||| ||||| |||||    
T  22767227 gagacaaacgaacatggttgctcatactttagctaaggcggcatgttcttgggctagtcaccgtatttttaattcttattcttcttgtgttgaacattgg 22767128  T
Q  164 t---ttaatgataatagttaacttt 185  Q
    |   | |||||||||||||||||||    
T  22767127 ttgatgaatgataatagttaacttt 22767103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 137
Target Start/End: Original strand, 23075065 - 23075138
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttatt 137  Q
    |||||||||||||||||||||| ||| |||| |||||||| ||||||||||| ||||||||| |||||||||||    
T  23075065 gagacaagcgaacatggttgctcatagtttagctaggacgacatgttcttgggctagtcaccgtattttttatt 23075138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 27532860 - 27532767
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaa 157  Q
    ||||||||||||||||||| ||||||||||| |||||  | ||||||||||| ||| ||||  ||||||||||| |||||||||| ||||||||    
T  27532860 gagacaagcgaacatggttacttatactttagctagggtgacatgttcttgggctaatcactgtattttttattcttatccttctcgtattgaa 27532767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 8388319 - 8388440
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattgg 163  Q
    |||||||||||||||||||||| |||  ||| |||||  ||  ||||||||| ||||||||| ||||||||||| ||||||||||| |||| || | |||    
T  8388319 gagacaagcgaacatggttgctcatagcttagctagggtggtttgttcttgggctagtcaccgtattttttattcttatccttcttatattaaacactgg 8388418  T
Q  164 t---ttaatgataatagttaac 182  Q
    |   ||||||||||||||||||    
T  8388419 ttgattaatgataatagttaac 8388440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 41940691 - 41940566
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatatttttt-attattatccttcttgtattgaatattg 162  Q
    |||||||| ||||||| ||||| |||||||| ||||||| || |||| |||| ||||||||| |||||||| ||| ||||||||||| ||||||| ||||    
T  41940691 gagacaagagaacatgattgctaatactttagctaggactgcttgttattgggctagtcaccgtatttttttattcttatccttcttttattgaacattg 41940592  T
Q  163 gt---ttaatgataatagttaacttt 185  Q
    ||   ||||||||| | |||||||||    
T  41940591 gttgattaatgatagttgttaacttt 41940566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 180
Target Start/End: Original strand, 12660549 - 12660668
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg- 162  Q
    ||||||||||||||||  |||| |||||||| |||||||||| ||||||||  ||| ||| ||||||||||||| ||||| || ||||||| || ||||     
T  12660549 gagacaagcgaacatgactgctcatactttagctaggacggcctgttcttgagctaatcaacatattttttatttttatcttttttgtattaaacattga 12660648  T
Q  163 --gtttaatgataatagtta 180  Q
      | ||||||||||||||||    
T  12660649 ttgattaatgataatagtta 12660668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 30573630 - 30573507
Alignment:
Q  65 agacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattgaatattg-- 162  Q
    ||||||||||||||||||| | ||| |||| ||| | |||  |||| ||||  |||||||| ||||||||||| ||||||||||| ||||||| ||||      
T  30573630 agacaagcgaacatggttgttcatattttagctaaggcggtctgtttttgggttagtcaccgtattttttattcttatccttcttatattgaacattgat 30573531  T
Q  163 -gtttaatgataatagttaacttt 185  Q
     | |||||||||||||||||||||    
T  30573530 tgattaatgataatagttaacttt 30573507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 15988703 - 15988608
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatatt--ttttattattatccttcttgtattgaa 157  Q
    |||||||||  ||||||||||| |||||||| ||| | |||| || | |||| ||||||||||||||  ||||||| |||||||||||||||||||    
T  15988703 gagacaagcagacatggttgctcatactttagctaaggcggcctgctattgggctagtcaccatattttttttatttttatccttcttgtattgaa 15988608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 185
Target Start/End: Complemental strand, 26597377 - 26597296
Alignment:
Q  107 tgttcttggactagtcaccatattttttattattatccttcttgtattgaatattggt---ttaatgataatagttaacttt 185  Q
    ||||||||||||| ||||| ||| ||| ||| ||||||||||||||||||| | ||||   |||||||||||||||||||||    
T  26597377 tgttcttggactaatcaccgtatatttgattcttatccttcttgtattgaacactggttgattaatgataatagttaacttt 26597296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 26296352 - 26296432
Alignment:
Q  117 ctagtcaccatatttt-ttattattatccttcttgtattgaatattg---gtttaatgataatagttaactttacttctgt 193  Q
    |||||||| ||||||| ||||||||||||||||||||||||| ||||   | ||||||||||||||||| ||| |||||||    
T  26296352 ctagtcactatatttttttattattatccttcttgtattgaacattgtttgattaatgataatagttaaatttgcttctgt 26296432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 190
Target Start/End: Original strand, 26076577 - 26076643
Alignment:
Q  127 tattttttattattatccttcttgtattgaatattggt---ttaatgataatagttaactttacttc 190  Q
    ||||||||||| |||| |||||||||||||| ||||||   ||||||||||||||||||||| ||||    
T  26076577 tattttttattcttattcttcttgtattgaacattggttgattaatgataatagttaactttgcttc 26076643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 185
Target Start/End: Complemental strand, 3308234 - 3308175
Alignment:
Q  129 ttttttattattatccttcttgtattgaatattg---gtttaatgataatagttaacttt 185  Q
    ||||||||| || |||||||||||||||| ||||   | |||||||||||||||||||||    
T  3308234 ttttttatttttctccttcttgtattgaacattgatcgattaatgataatagttaacttt 3308175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 2872339 - 2872295
Alignment:
Q  118 tagtcaccatattttttattattatccttcttgtattgaatattg 162  Q
    |||||||| ||||||| ||| ||||||||||||||||||| ||||    
T  2872339 tagtcaccgtatttttgatttttatccttcttgtattgaacattg 2872295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 162
Target Start/End: Original strand, 23083639 - 23083671
Alignment:
Q  130 tttttattattatccttcttgtattgaatattg 162  Q
    |||||||| ||||||||||||||||||||||||    
T  23083639 tttttatttttatccttcttgtattgaatattg 23083671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 218 - 147
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatatttttta 135  Q
    |||||||||||||| ||||||| ||||||||||||||||| | ||||||||| ||||||||| |||||||||    
T  218 gagacaagcgaacacggttgctcatactttaactaggacgacttgttcttgggctagtcaccgtatttttta 147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 423 - 513
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtatt 154  Q
    |||||||||||||||||||||| |||  ||| ||||| |||| | |  |||| ||||||||| ||||||||||| |||| |||||||||||    
T  423 gagacaagcgaacatggttgctcatagcttagctagggcggcctatatttgggctagtcaccgtattttttattcttattcttcttgtatt 513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 154
Target Start/End: Original strand, 20391 - 20481
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtatt 154  Q
    |||||||||||| ||| || || |||||||| ||||| |  | ||||||||| ||||||| | ||||||||||| ||||| ||||||||||    
T  20391 gagacaagcgaatatgattactcatactttagctagggcaacctgttcttgggctagtcatcgtattttttattcttatcattcttgtatt 20481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 190
Target Start/End: Complemental strand, 26192 - 26126
Alignment:
Q  127 tattttttattattatccttcttgtattgaatattg---gtttaatgataatagttaactttacttc 190  Q
    ||||||||||| ||||||||||||||||||| ||||   | ||||||||||| ||||||||| ||||    
T  26192 tattttttattcttatccttcttgtattgaacattgttcgattaatgataatggttaactttgcttc 26126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 156
Target Start/End: Complemental strand, 44195 - 44103
Alignment:
Q  64 gagacaagcgaacatggttgcttatactttaactaggacggcatgttcttggactagtcaccatattttttattattatccttcttgtattga 156  Q
    |||| ||||||||||||||||| |||  ||| ||||| |||  ||||||||| ||||||||  ||||||| |||  |||||||||| ||||||    
T  44195 gagagaagcgaacatggttgctcatagcttagctagggcggtctgttcttgggctagtcactgtatttttgattcatatccttcttctattga 44103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University