View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18235_low_10 (Length: 328)
Name: NF18235_low_10
Description: NF18235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18235_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 5594591 - 5594897
Alignment:
| Q |
1 |
ctgataggccgcaccc-agtgatggtgttcccgcgactctcttatggcagaaggatattcttgaaaaagttttggtgttcgtttggcggcactttcgaaa |
99 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
5594591 |
ctgataggccgcaccccagtgatggtgttcccgcgactctcttatggcggaaggatattcttgaaaaggttttggtgttcgtttggcggcattttcgaaa |
5594690 |
T |
|
| Q |
100 |
tagcttgtccactagaaccaatttgttttggaaagggattatttctaatgaagcacagcacaagtgtgtgttagttgttgcggtt--------tcatttg |
191 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
5594691 |
tagtttgtccactagagccaatttgttttggaaagggattatttctaatga-----agcacaagtgtgtgttagttgttgcggtttacaggaatcatttg |
5594785 |
T |
|
| Q |
192 |
tttataacttgcagtctctttggtcagatttgacaacttgttaggaattggctttgggtctactcaacggatccatctaatttactagatcatttttatc |
291 |
Q |
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||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| |
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| T |
5594786 |
tttctaacttgcagtctctttggtcagatttgacagcttgttaggaattggctttgggtttactcaacggatctatctaatttactaga-----tttatc |
5594880 |
T |
|
| Q |
292 |
agtttaatttggtacct |
308 |
Q |
| |
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||||||||||||||||| |
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| T |
5594881 |
agtttaatttggtacct |
5594897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 5182293 - 5182256
Alignment:
| Q |
210 |
tttggtcagatttgacaacttgttaggaattggctttg |
247 |
Q |
| |
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| T |
5182293 |
tttggtcagatttgacagcttgttaggaactggctttg |
5182256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 296
Target Start/End: Original strand, 7957465 - 7957769
Alignment:
| Q |
3 |
gataggccgcaccc-agtgatggtgttcccgcgactctcttatggcagaaggatattcttgaaaaagttttggtgttcgtttggcggcactttcgaaata |
101 |
Q |
| |
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||||||| |||||| |||| || |||||||||||||||||||||| |||||||||||||| || || |||||||| | |||||||| || ||| ||| |
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| T |
7957465 |
gataggctgcaccctagtgttgttgttcccgcgactctcttatggtggaaggatattcttgtgaaggtcttggtgtttgcttggcggcttttccgagata |
7957564 |
T |
|
| Q |
102 |
gcttgtccactagaaccaatttgttttggaaagggattatttctaatgaagcacagcacaagtgtgtgttagttgttgcggtt----------------t |
185 |
Q |
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| ||| |||||||| ||||| | | | ||| ||||||||||||| |||| ||||||||||||| ||||| ||||||||| | |
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| T |
7957565 |
gattgcccactagagccaatctatgtcggagagggattatttctcatga-----agcacaagtgtgttttagtggttgcggtttacaggaatcagggaat |
7957659 |
T |
|
| Q |
186 |
catttgtttataacttgcagtctctttggtcagatttgacaacttgttaggaattggctttgggtctactcaacggatccatctaatttactagatcatt |
285 |
Q |
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||||| ||| ||||||| |||||| |||||||||||| || ||||||| |||||||||||| || |||||| |||||||||||||| || | ||||||| |
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| T |
7957660 |
catttatttctaacttgtagtctc-atggtcagatttggcagcttgttacgaattggctttgtgtttactcaccggatccatctaatatattggatcatt |
7957758 |
T |
|
| Q |
286 |
tttatcagttt |
296 |
Q |
| |
|
||||||||||| |
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|
| T |
7957759 |
tttatcagttt |
7957769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 200 - 296
Target Start/End: Original strand, 30235438 - 30235534
Alignment:
| Q |
200 |
ttgcagtctctttggtcagatttgacaacttgttaggaattggctttgggtctactcaacggatccatctaatttactagatcatttttatcagttt |
296 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||| | |||||| |||||| |||||| | | |||||||||||||||||| |
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| T |
30235438 |
ttgcagtctctttgatcagatttgacagcttgttaggaattggctttgtatttactcagcggatctgtctaatattttggatcatttttatcagttt |
30235534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 296
Target Start/End: Original strand, 7320469 - 7320569
Alignment:
| Q |
196 |
taacttgcagtctctttggtcagatttgacaacttgttaggaattggctttgggtctactcaacggatccatctaatttactagatcatttttatcagtt |
295 |
Q |
| |
|
|||||||| |||| |||||||||||||| || |||||||| ||||||| || |||||| | | |||||||||||| || | |||||||| ||| |||| |
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| T |
7320469 |
taacttgctgtctttttggtcagatttggcagcttgttagaaattggccttttgtctacatagcagatccatctaatatattggatcatttctattagtt |
7320568 |
T |
|
| Q |
296 |
t |
296 |
Q |
| |
|
| |
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| T |
7320569 |
t |
7320569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 297
Target Start/End: Complemental strand, 14339168 - 14339078
Alignment:
| Q |
207 |
ctctttggtcagatttgacaacttgttaggaattggctttgggtctactcaacggatccatctaatttactagatcatttttatcagttta |
297 |
Q |
| |
|
||||||||||||||||| || ||| |||||| ||||||||| | | ||| ||||||||||||| | ||||||||||| ||||||||| |
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| T |
14339168 |
ctctttggtcagatttggcagcttcttaggatttggctttgtcttcattcagcggatccatctaacacattagatcattttcatcagttta |
14339078 |
T |
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