View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18235_low_11 (Length: 318)
Name: NF18235_low_11
Description: NF18235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18235_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 13233318 - 13233031
Alignment:
| Q |
13 |
attctcgtagtgatgagtgaagacatctccatgatgtaccatataaatagtattaatggaatcggtgtagtaaatgatgtttctcaaatcttccttccaa |
112 |
Q |
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| T |
13233318 |
attctcgtagtgatgagtgaagacatctccatgatgtaccatatgaatagtattaatggaatcaatgtagtaaatgatgtttctcaaatcttccttccaa |
13233219 |
T |
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| Q |
113 |
caaagtcgaatcccttgaagcaaagccaagatttcagcatgaagaatattggaataaacaatattaccataaaattcacacataaaacctccattatagt |
212 |
Q |
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| T |
13233218 |
caaagtcgaatcccttgaagcaaagccaagatttcagcatgaagaatattggaataaacaatattaccataaaatgcacacataaaacctccattagagt |
13233119 |
T |
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| Q |
213 |
ctctaattaggccatcaaaatctgccattcccgagttgaattgagcactatcatccacattaaagatatatgtactagatgatcctct |
300 |
Q |
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| T |
13233118 |
ctctaattagcccaccaaaatctgccattcccgagttgaattgaacactatcatccacattaaggatatatgtactagatgatcctct |
13233031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 293
Target Start/End: Original strand, 31647556 - 31647678
Alignment:
| Q |
171 |
caatattaccataaaattcacacataaaacctccattatagtctctaattaggccatcaaaatctgccattcccgagttgaattgagcactatcatccac |
270 |
Q |
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| T |
31647556 |
caatattaccatggaatccatgcatgaaacctcctttggagtctctaattaggtcatcaaaacttatcattcccgagtttgatcgagcactagcatccac |
31647655 |
T |
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| Q |
271 |
attaaagatatatgtactagatg |
293 |
Q |
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| T |
31647656 |
attaaggatatatgtaccagatg |
31647678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 285
Target Start/End: Complemental strand, 12286118 - 12285850
Alignment:
| Q |
17 |
tcgtagtgatgagtgaagacatctccatgatgtaccatataaatagtattaatggaatcggtgtagtaaatgatgtttctcaaatcttccttccaacaaa |
116 |
Q |
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||||| ||||| ||||||||| | ||| |||||| | || |||||||||||||||||| ||||| |||| ||||||| |||| |||| |||||||||| |
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| T |
12286118 |
tcgtaatgatggatgaagacatttgcataatgtacgagatgaatagtattaatggaatcaatgtagcaaataatgtttcgcaaaacttcattccaacaaa |
12286019 |
T |
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| Q |
117 |
gtcgaatcccttgaagcaaagccaagatttcagcatgaagaatattggaataaacaatattaccataaaattcacacataaaacctccattatagtctct |
216 |
Q |
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| T |
12286018 |
gttgaatcccatgaagcaaagccaacatttcaacatgaagaatattcgagtaaccaatattaccatagaattcacacatgaaacctccattggagtctct |
12285919 |
T |
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| Q |
217 |
aattaggccatcaaaatctgccattcccgagttgaattgagcactatcatccacattaaagatatatgt |
285 |
Q |
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| T |
12285918 |
aattaagccaccaaaatatgtcattctcgagttgtattgagcattaccatccacattcaggatatatgt |
12285850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 18850564 - 18850526
Alignment:
| Q |
15 |
tctcgtagtgatgagtgaagacatctccatgatgtacca |
53 |
Q |
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| T |
18850564 |
tctcgtagtgatgagtgaagacatctgcatgatgtacca |
18850526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 1808102 - 1808017
Alignment:
| Q |
137 |
gccaagatttcagcatgaagaatattggaataaacaatattaccataaaattcacacataaaacctccattatagtctctaattag |
222 |
Q |
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| T |
1808102 |
gccaagatttcggcatgaagaatatttgagtagtcaatattaccatgaaagccacacataaattgtccatcaaaatctctaattag |
1808017 |
T |
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