View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18235_low_12 (Length: 287)
Name: NF18235_low_12
Description: NF18235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18235_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 4563646 - 4563901
Alignment:
| Q |
18 |
ttcattgtgtatccgtgtgaacagaagagaatcatagttttgaattgtggtatgcaactacaatttcggttgtatatgacacatttaccgtaatataaaa |
117 |
Q |
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| T |
4563646 |
ttcattgtgtatccgtgtgaacggaaaagaatcatagttttgaattgtggtatgcaactacaatttcggttatatctaacacatttactgtaatataaaa |
4563745 |
T |
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| Q |
118 |
gtttgcagtgtaatcgcgatttaaaactatgaagataatgtgttcggattgatggatagaatgaaagacaaaagaaagagaatggataaaagtgaagaga |
217 |
Q |
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| T |
4563746 |
gtttgcattgtaatcgcgatttaaaactatgaagataatgtcttcggattgatggatagaatgaaagacaaaagaaagagaatggataaaagtgaagaga |
4563845 |
T |
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| Q |
218 |
atacctgaagagattcatttgagagaaccaagaagaaatgtttttggtttctttct |
273 |
Q |
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| T |
4563846 |
atacctgaagagattcatttgagagaaccaagaagaaatgtttttggtttctttct |
4563901 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 130
Target Start/End: Complemental strand, 30688397 - 30688368
Alignment:
| Q |
101 |
tttaccgtaatataaaagtttgcagtgtaa |
130 |
Q |
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| T |
30688397 |
tttaccgtaatataaaagtttgcagtgtaa |
30688368 |
T |
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