View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18235_low_16 (Length: 251)
Name: NF18235_low_16
Description: NF18235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18235_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 5140559 - 5140780
Alignment:
| Q |
13 |
acctgtggaaaacaacaacaaaatgacaccgggtgatgtagtgtctagccgtctataacacacttaaactaaaatcaccataataaaattaacacctcat |
112 |
Q |
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| T |
5140559 |
acctgtggaaaacaacaacaaaatgacaccgggtgatgtagtgtctagccgtctataacacacttaaactaaaatcaccataatcaaattaacacctcat |
5140658 |
T |
|
| Q |
113 |
gcataatcacataaactatacacaaaatgtatcaaataatgagggtacaacatctggtaaacctagcaaatcagttgtcttttacacaaaccaacgacga |
212 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
5140659 |
acataatcacataaactatacacaaaatgcatcaaataatgaacatacaacatttggtaaacctagcaaatcagttgtcttttacacagaccaactacga |
5140758 |
T |
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| Q |
213 |
gtgaagaatatcatataaaaaa |
234 |
Q |
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|||||||||||||||||||||| |
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| T |
5140759 |
gtgaagaatatcatataaaaaa |
5140780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 38921490 - 38921374
Alignment:
| Q |
118 |
atcacataaactatacacaaaatgtatcaaataatgagggtacaacatctggtaaa-cctagcaaatcagttgtcttttacacaaaccaacgacgagtga |
216 |
Q |
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|||||||||||||||||| ||||| |||||||||||| |||||||||| | |||| || | ||| || ||| |||| |||||||||| |||||||| |
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| T |
38921490 |
atcacataaactatacacgaaatgcatcaaataatgaatgtacaacatccgataaacccaaaaaaagcatatgttctttatacaaaccaacaacgagtga |
38921391 |
T |
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| Q |
217 |
agaatatcatataaaaa |
233 |
Q |
| |
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|||||| |||||||||| |
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| T |
38921390 |
agaataacatataaaaa |
38921374 |
T |
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