View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18235_low_18 (Length: 231)

Name: NF18235_low_18
Description: NF18235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18235_low_18
NF18235_low_18
[»] chr5 (4 HSPs)
chr5 (21-215)||(593977-594174)
chr5 (17-67)||(12096234-12096284)
chr5 (14-67)||(3077789-3077842)
chr5 (14-67)||(34208730-34208783)
[»] chr8 (1 HSPs)
chr8 (17-67)||(32183513-32183563)
[»] chr7 (2 HSPs)
chr7 (17-67)||(5514974-5515024)
chr7 (14-67)||(9332513-9332566)
[»] chr6 (1 HSPs)
chr6 (19-67)||(5008328-5008376)
[»] chr4 (3 HSPs)
chr4 (35-65)||(34334548-34334578)
chr4 (14-67)||(39482054-39482107)
chr4 (19-67)||(50774090-50774138)
[»] chr3 (3 HSPs)
chr3 (14-67)||(1352028-1352081)
chr3 (14-67)||(22157450-22157503)
chr3 (14-67)||(39807011-39807064)
[»] chr2 (1 HSPs)
chr2 (14-67)||(15233947-15234000)
[»] scaffold0103 (1 HSPs)
scaffold0103 (19-67)||(44815-44863)


Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 594174 - 593977
Alignment:
Q  21 aaatatttttatgttttaattactccttaagacttgtgttaagagctnnnnnnnnnnnnnnctgagataaagtttgtattaagcagcggcgttttcttat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |              |||||||||||||||||||||||||||||||||||||||    
T  594174 aaatatttttatgttttaattactccttaagacttgtgttaagag-ttaaaaagtaaaaaactgagataaagtttgtattaagcagcggcgttttcttat 594076  T
Q  121 atnnnnnnnnn---tagtataattaaaaatactatccttacaaacgacgtaccaataagacataatgtcgata-tattttttacacttaacacaaatat 215  Q
    ||            |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | |||||||||||||||||||||||    
T  594075 ataaaaaaaaaaaatagtataattaaaaatactatccttacaaacgacgtactaataagatataatgtcgatatttttttttacacttaacacaaatat 593977  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 12096284 - 12096234
Alignment:
Q  17 atacaaatatttttatgttttaattactccttaagacttgtgttaagagct 67  Q
    ||||||||| || |||| ||||||||||||||||| ||||||| |||||||    
T  12096284 atacaaatacttatatgatttaattactccttaagtcttgtgtcaagagct 12096234  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 3077789 - 3077842
Alignment:
Q  14 aatatacaaatatttttatgttttaattactccttaagacttgtgttaagagct 67  Q
    |||| |||||||||| |||  |||||||||||||||| |||||||| |||||||    
T  3077789 aatacacaaatatttatatactttaattactccttaaaacttgtgtcaagagct 3077842  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 34208730 - 34208783
Alignment:
Q  14 aatatacaaatatttttatgttttaattactccttaagacttgtgttaagagct 67  Q
    |||| |||||||||| |||  |||||||||||||||| |||||||| |||||||    
T  34208730 aatacacaaatatttatatactttaattactccttaaaacttgtgtcaagagct 34208783  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 32183563 - 32183513
Alignment:
Q  17 atacaaatatttttatgttttaattactccttaagacttgtgttaagagct 67  Q
    |||||||||||| |||| ||||||||||||||||||||||||  |||||||    
T  32183563 atacaaatatttctatgctttaattactccttaagacttgtgccaagagct 32183513  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 5514974 - 5515024
Alignment:
Q  17 atacaaatatttttatgttttaattactccttaagacttgtgttaagagct 67  Q
    |||||||||||||||| ||||||||| || ||||||||||||| |||||||    
T  5514974 atacaaatatttttatattttaattattcattaagacttgtgtcaagagct 5515024  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 9332513 - 9332566
Alignment:
Q  14 aatatacaaatatttttatgttttaattactccttaagacttgtgttaagagct 67  Q
    |||| |||||||||| |||  |||||||||||||||| ||||||||||||||||    
T  9332513 aatacacaaatatttatatactttaattactccttaaaacttgtgttaagagct 9332566  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 5008328 - 5008376
Alignment:
Q  19 acaaatatttttatgttttaattactccttaagacttgtgttaagagct 67  Q
    |||||||||| |||  |||||||||||||||| ||||||||||||||||    
T  5008328 acaaatatttatatactttaattactccttaaaacttgtgttaagagct 5008376  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 34334548 - 34334578
Alignment:
Q  35 tttaattactccttaagacttgtgttaagag 65  Q
    |||||||||||||||||||||||||||||||    
T  34334548 tttaattactccttaagacttgtgttaagag 34334578  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 39482054 - 39482107
Alignment:
Q  14 aatatacaaatatttttatgttttaattactccttaagacttgtgttaagagct 67  Q
    |||| |||||||||| |||  |||||||||||||||| |||||||| |||||||    
T  39482054 aatacacaaatatttatatactttaattactccttaaaacttgtgtcaagagct 39482107  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 50774138 - 50774090
Alignment:
Q  19 acaaatatttttatgttttaattactccttaagacttgtgttaagagct 67  Q
    |||||||||| |||  |||||||||||||||| |||||||| |||||||    
T  50774138 acaaatatttatatactttaattactccttaaaacttgtgtcaagagct 50774090  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 1352081 - 1352028
Alignment:
Q  14 aatatacaaatatttttatgttttaattactccttaagacttgtgttaagagct 67  Q
    |||| |||||||||| |||  |||||||||||||||| |||||||| |||||||    
T  1352081 aatacacaaatatttatatactttaattactccttaaaacttgtgtcaagagct 1352028  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 22157450 - 22157503
Alignment:
Q  14 aatatacaaatatttttatgttttaattactccttaagacttgtgttaagagct 67  Q
    |||| |||||||||| |||  |||||||||||||||| |||||||| |||||||    
T  22157450 aatagacaaatatttatatactttaattactccttaaaacttgtgtcaagagct 22157503  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 39807064 - 39807011
Alignment:
Q  14 aatatacaaatatttttatgttttaattactccttaagacttgtgttaagagct 67  Q
    |||| |||||||||| |||  |||||||||||||||| |||||||| |||||||    
T  39807064 aatacacaaatatttatatactttaattactccttaaaacttgtgtcaagagct 39807011  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 15233947 - 15234000
Alignment:
Q  14 aatatacaaatatttttatgttttaattactccttaagacttgtgttaagagct 67  Q
    ||||||||||| ||| |||  |||||||||||||||| |||||||| |||||||    
T  15233947 aatatacaaatgtttatatactttaattactccttaaaacttgtgtcaagagct 15234000  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 44815 - 44863
Alignment:
Q  19 acaaatatttttatgttttaattactccttaagacttgtgttaagagct 67  Q
    |||||||||| |||  |||||||||||||||| |||||||| |||||||    
T  44815 acaaatatttatatactttaattactccttaaaacttgtgtcaagagct 44863  T

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