View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18235_low_2 (Length: 570)
Name: NF18235_low_2
Description: NF18235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18235_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 536; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Complemental strand, 7425508 - 7424953
Alignment:
| Q |
1 |
caagagcctccaatcacctagttggcataaccaagaaagaacctgaaccaacaacatcaggttcaagcaatacaaaacacaaaagaaaaaccacctgaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425508 |
caagagcctccaatcacctagttggcataaccaagaaagaacctgaaccaacaacatcaggttcaagcaatacaaaacacaaaagaaaaaccacctgaat |
7425409 |
T |
|
| Q |
101 |
caagcgaaatcattttggttgggcaatgccaatcaatgttgtcaacaccagaagctacaatacataaataaatgggacagaaacttcttaataggtaact |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7425408 |
caagcaaaatcattttggttgggcaatgccaatcaatgttgtcaacacaagaagctacaatacataaataaatgggacataaacttcttaataggtaact |
7425309 |
T |
|
| Q |
201 |
acattcatgataagcaagggaccacgacattcttaaacttcaacacctttaacttgccatgtttctaatatatagtagcatatccccctttattcatcga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425308 |
acattcatgataagcaagggaccacgacattcttaaacttcaacacctttaacttgccatgtttctaatatatagtagcatatccccctttattcatcga |
7425209 |
T |
|
| Q |
301 |
ccaatcactcattgttgcaaaattccaacaccttgagttatagggaagtctctcttattaacaaacaagcagcacctaaagcacacctaagttaagaaaa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7425208 |
ccaatcactcattgttgcaaaattccaacaccttgagttatagggaagtctctcttattaacaaacaagcagcacctaaagcacacctaagttaagaaaa |
7425109 |
T |
|
| Q |
401 |
tagtaggcataacgttctcaagagtgaccgcattgtttaatattgaaaactggaatatgtgtgctaccatgacagaaaatgacaacaaaaagaccctagt |
500 |
Q |
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| T |
7425108 |
tagtaggcataacgttctcaagagtgaccgcattgtttaatattgaaaactggaatatgtgtgctaccatgacagaaaatgacaacaaaaagaccctagt |
7425009 |
T |
|
| Q |
501 |
agaaccaaattcaaccataattcattgttgggcatgtcatgacatattgcaatgat |
556 |
Q |
| |
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| T |
7425008 |
agaaccaaattcaaccataatttattgttgggcatgtcatgacatattgccatgat |
7424953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 21 - 483
Target Start/End: Original strand, 11356823 - 11357305
Alignment:
| Q |
21 |
gttggcataaccaagaaagaacctgaaccaacaacatcaggttcaagcaatacaaaacacaaaagaaaaaccacctgaa-tcaagcgaaatcattttggt |
119 |
Q |
| |
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|||| ||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||| ||||||| ||||||| || | |||| ||||||||||||| |
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| T |
11356823 |
gttgacataaccaa-aaagaccctgaactaacaacactaggttcaagcaatacaaaacaccaaagaaataccacctaaaataaagcaaaatcattttggt |
11356921 |
T |
|
| Q |
120 |
tgggcaatgccaatcaatgttgtcaacaccagaagctacaatacataaataaatgggaca--gaaacttcttaataggtaactacattcatgataagcaa |
217 |
Q |
| |
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||||| || ||| || | || || ||||| || |||| ||| ||||||||||| ||| || ||||||| ||||||||| |||| || || |||| |
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| T |
11356922 |
ggggcattgtcaaccattaatgacagcaccacaatgtacactacgtaaataaatggcacacagagacttcttgttaggtaactccattgatcatgagcat |
11357021 |
T |
|
| Q |
218 |
gggaccacgacattcttaaacttcaacacctttaacttgccatgtttctaatatatagtagcatatccccctttattcatcgaccaatcactcattgttg |
317 |
Q |
| |
|
|||||||||| |||||||||||||||||||| || || ||||||| ||||||||||||||||||| || |||||| |||| ||||| |||||||||||| |
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| T |
11357022 |
tggaccacgaccttcttaaacttcaacaccttaaattttccatgttcctaatatatagtagcatattccgctttatccatcaaccaaccactcattgttg |
11357121 |
T |
|
| Q |
318 |
caaaattccaacaccttgagttatagggaagtctctcttattaacaaacaagcagcac--------------ctaaagcac----acctaagttaagaaa |
399 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||| | ||||||| || |||||||||||| |
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| T |
11357122 |
caaaattccaacaccttgagttataaggaagtctctcttatcaacaaataagcagcactaaaaggctggtcaccaaagcacacatacataagttaagaaa |
11357221 |
T |
|
| Q |
400 |
atagtaggcataacgttctcaagagtgaccgcattgtttaatattgaaaactggaatatgtgtgctaccatgacagaaaatgac |
483 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| ||||||| || |||| | |||||||| |||||| |||||||||| |
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| T |
11357222 |
atagtaggcataacgttctcaagagtgactgcattgtttgatattgacaattggagtttgtgtgctgccatgatagaaaatgac |
11357305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 9e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 147 - 483
Target Start/End: Complemental strand, 12490904 - 12490552
Alignment:
| Q |
147 |
accagaagctacaatacataaataaatgggacagaaa--cttcttaataggtaactacattcatgataagcaagggaccacgacattcttaaacttcaac |
244 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||||| ||| |||||| |||||||||| |||||| ||||| | |||||||||| ||||||||||||||| |
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| T |
12490904 |
accacaagctacactacatgaataaatgggacataaagacttcttgataggtaactcaattcataataagtagaggaccacgaccttcttaaacttcaac |
12490805 |
T |
|
| Q |
245 |
acctttaacttgccatgtttctaatatatagtagcatatccccctttattcatcgaccaatcactcattgttgcaaaattccaacaccttgagttatagg |
344 |
Q |
| |
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||||| || ||| |||||| ||||||||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12490804 |
accttaaatttgtcatgttcctaatatatagtagcatattcccctttatccatcaaccaaccactcattgttgcaaaattccaacaccttgagttatagg |
12490705 |
T |
|
| Q |
345 |
gaagtctctcttattaacaaacaagcagcac--------------ctaaagcacacctaagttaagaaaatagtaggcataacgttctcaagagtgaccg |
430 |
Q |
| |
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|||||||||||||| |||||||||||| ||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||| | | |
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| T |
12490704 |
gaagtctctcttatcaacaaacaagcaacactaaaaggcttgtcaccaaagcacacataagttaagaatatagtaggcataacgttctcaagagtgcctg |
12490605 |
T |
|
| Q |
431 |
cattgtttaatattgaaaactggaatatgtgtgctaccatgacagaaaatgac |
483 |
Q |
| |
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|||||||| |||||||||| |||| | |||||||| |||| |||||||||||| |
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|
| T |
12490604 |
cattgtttgatattgaaaattggactttgtgtgctgccataacagaaaatgac |
12490552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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