View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18235_low_4 (Length: 524)
Name: NF18235_low_4
Description: NF18235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18235_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 20 - 513
Target Start/End: Complemental strand, 47710399 - 47709908
Alignment:
| Q |
20 |
ccctgataatcaaggtatgtcacttgcaaatgattttgagtgatgctgataactaaaccaatattttactctagtataatgtttttaaattttaacactt |
119 |
Q |
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| T |
47710399 |
ccctgataatcaaggtatgtcacttgcaaatgattttgagtgatgctgataactaaaccaatattttactc-agtataatgtttt-aaattttaacactt |
47710302 |
T |
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| Q |
120 |
tcattaaccctcttctacatgaactctaaataacttattatgcaattccactattcgtatatgaagtttgtacacaatatatattaaagctaacatagct |
219 |
Q |
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| T |
47710301 |
tcattaaccctcttctacatgaactctaaataacttattatgcaattccactattcgtatatgaagtttgtacacaatatatattagagctagcatagct |
47710202 |
T |
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| Q |
220 |
gcgttcttattcttttatacagaaagatatttagttttggaaacaggtgctattttatatctcttttttcttttctgttctgagaagacagaacacaact |
319 |
Q |
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| T |
47710201 |
gcgttcttattcttttatacagaaagatatttagttttggaaacaggtgctattttatatctcttttttcttttcttttctgagaagacagaacacaact |
47710102 |
T |
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| Q |
320 |
atgttagtttaatattgcaagttgttgaagattttgattattatcagatcaaataacattgaagaatccaattatatcgattatagttaatggatatcct |
419 |
Q |
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| T |
47710101 |
atgttagtttaatattgcaagttgttgaagattttgattattatcagatcaaataacattgaagaatccaattatatcgattatagttaatggatatcct |
47710002 |
T |
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| Q |
420 |
tctatatacctattaatacattttgagcttgtaggctgttcccttgtaatcataggaaaatgtgctgcagcgtgtttttgttacagtgatgatg |
513 |
Q |
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| T |
47710001 |
tctatgtacctattaatacattttgagcttgtaggctgttcccttgtaatcataggaaaatgtgctgcagcgtgtttttgttacagtgatgatg |
47709908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 15833610 - 15833561
Alignment:
| Q |
26 |
taatcaaggtatgtcacttgcaaatgattttgagtgatgctgataactaa |
75 |
Q |
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| T |
15833610 |
taatgaaggtatgccacttgcaaaggactttgagtggtgctgataactaa |
15833561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 396
Target Start/End: Original strand, 16560366 - 16560394
Alignment:
| Q |
368 |
tcaaataacattgaagaatccaattatat |
396 |
Q |
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| T |
16560366 |
tcaaataacattgaagaatccaattatat |
16560394 |
T |
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