View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18235_low_5 (Length: 435)
Name: NF18235_low_5
Description: NF18235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18235_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 430
Target Start/End: Complemental strand, 23466543 - 23466130
Alignment:
| Q |
17 |
agaaaaaatgtgtgcttggttgaagacgaaacggacaagtcaaaaaggaaatggcaatattttccgaagattgtaaacgagaaagtgaaacaagggaaaa |
116 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23466543 |
agaaaaaatgtgtgtttggttgaagacgaaaaggacaagtcaaaaaggaaatggcaatattttccgaagattgtaaacgagaaagtgaaacaagggaaaa |
23466444 |
T |
|
| Q |
117 |
tcatggaaattgttgatcataggttaatggaatgtggtggtgttgatgagagggaggtgattaaattggtttatgtagctttatggtgtgtgcaagagaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23466443 |
tcatggaaattgttgatcataggttaatggaatgtggtggtgttgatgagagggaggtgattaaattggtttatgttgctttatggtgtgtgcaagagaa |
23466344 |
T |
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| Q |
217 |
gccaaggttgaggcctagtatggctagagtggttgatatgcttgaagggcgtgtgagagtggatgagccaccaggtacaagaatgattcttgttgatttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23466343 |
gccaaggttgaggcctagtatggctagagtggttgatatgcttgaagggcgtgtgagagtggatgagccaccaggtacaagaatgattcttgttgatttt |
23466244 |
T |
|
| Q |
317 |
ctcagtgttgatgatgataatgttacagatagtaataacttgccaaggttggacactatgtctagtcaaggaacacaaagcaatgtggaatgtaattcta |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23466243 |
ctcagtgttgatgatgataatgttacagatagtaataacttgccaaggttggacactatgtctagtcaaggaacacaaagcaatgtggaatgtaattcta |
23466144 |
T |
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| Q |
417 |
cctactcctttgct |
430 |
Q |
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| T |
23466143 |
cctactcttttgct |
23466130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 68 - 315
Target Start/End: Original strand, 46789912 - 46790159
Alignment:
| Q |
68 |
tggcaatattttccgaagattgtaaacgagaaagtgaaacaagggaaaatcatggaaattgttgatcataggttaatggaatgtggtggtgttgatgaga |
167 |
Q |
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| T |
46789912 |
tggcaattttttcctaaaattgtgaatgagaaattaagagaagggaaattgatggaaattgtggatcaaagggtagttgattttggaggtgttgatgaga |
46790011 |
T |
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| Q |
168 |
gggaggtgattaaattggtttatgtagctttatggtgtgtgcaagagaagccaaggttgaggcctagtatggctagagtggttgatatgcttgaagggcg |
267 |
Q |
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| T |
46790012 |
atgaggtgaaaaggttggtgtttattgctttgtggtgtatacaagagaagccaaggttgaggcctagtatggttgaagttgttgacatgcttgaaggacg |
46790111 |
T |
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| Q |
268 |
tgtgagagtggatgagccaccaggtacaagaatgattcttgttgattt |
315 |
Q |
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| T |
46790112 |
tgtgagagtggaggagccaccagggactagaatgattcttgttgattt |
46790159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 38820196 - 38820017
Alignment:
| Q |
17 |
agaaaaaatgtgtgcttggttgaagacgaaacggacaagtcaaaaaggaaatggcaatattttccgaagattgtaaacgagaaagtgaaacaagggaaaa |
116 |
Q |
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|||||| | ||||| |||| |||||| |||| |||||| |||| |||||||||| |||||||| |||||||| || |||||||||||||||||||||| |
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| T |
38820196 |
agaaaacaagtgtgtttggctgaagatgaaaaggacaacataaaatggaaatggcagtattttcctaagattgttaatgagaaagtgaaacaagggaaaa |
38820097 |
T |
|
| Q |
117 |
tcatggaaattgttgatcataggttaatggaatgtggtggtgttgatgagagggaggtgattaaattggtttatgtagctt |
197 |
Q |
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| T |
38820096 |
-catggaagttgttgatcataagttaacaaaatgtggaggtgttgctgatagggaggtgattaaattggtttatgttgctt |
38820017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 38821381 - 38821305
Alignment:
| Q |
104 |
aaacaagggaaaatcatggaaattgttgatcataggttaatggaatgtggtggtgttgatgagagggaggtgattaa |
180 |
Q |
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||||||||||||||||| ||||||| || ||||| ||||||||||| | ||||||| |||||||||||||||||| |
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| T |
38821381 |
aaacaagggaaaatcatcgaaattgctgttcataagttaatggaatatttgggtgttgttgagagggaggtgattaa |
38821305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 403
Target Start/End: Original strand, 38800084 - 38800138
Alignment:
| Q |
349 |
taataacttgccaaggttggacactatgtctagtcaaggaacacaaagcaatgtg |
403 |
Q |
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||||||| |||||||||||||||||||||||| |||| | |||||| ||||||| |
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| T |
38800084 |
taataacatgccaaggttggacactatgtctaatcaaagggcacaaatcaatgtg |
38800138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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