View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18235_low_9 (Length: 403)
Name: NF18235_low_9
Description: NF18235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18235_low_9 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 403
Target Start/End: Original strand, 4563153 - 4563541
Alignment:
| Q |
14 |
gatatgaataattgaatacctaaagaagatgcattctgaatgtatttagtagtgcgttgtcctgtgatgaaacggtggcgatcaaagagatgaaaaaatc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4563153 |
gatatgaataattgaatacctaaagaagatgcattctgaatgtatttagtagtgcgttgtcctgtgatgaaacggtggcgatcaaagagctgaaaaaatc |
4563252 |
T |
|
| Q |
114 |
cagtgatgcaaccaatctgcttctgcaattctttcttttcatctttcatagatttcaagccnnnnnnngacatttttatttcccttcaaacttcaactct |
213 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4563253 |
cagtgatgcaaccaatttgcttctgcaattctttcttttcatctttcatagatttcaagcctttttttgacatttttatttcccttcaaacttcaactct |
4563352 |
T |
|
| Q |
214 |
gttttgtccacagtttcaaacaatcatgcccctattgaatgtaaaagaannnnnnnnnnnnnnnnnnaattcaattgaaatatagcaacaatttcatggt |
313 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
4563353 |
gttttgtctacagtttcaaacaatcatgcccctaatgaatgtaaaagaaaaaatctttgaaatttttaattcaattgatatatagcaacaatttcatggt |
4563452 |
T |
|
| Q |
314 |
tttaaattgtagtcgcggctacagtcacactaaatatctttatatttaagaaaaatgcggcctatgcatttgaaattgcaattgtgatgc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
4563453 |
tttaaattgtagtcgcggctacagtcacactaaatatctttatatttaagaaaaatgc-gccgatgcatttgaaattgcaattgtgatgc |
4563541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 5027341 - 5027420
Alignment:
| Q |
92 |
cgatcaaagagatgaaaaaatccagtgatgcaaccaatctgcttctgcaattctttcttttcatctttcatagatttcaa |
171 |
Q |
| |
|
|||||||| || |||||||||||| | ||||| ||||| |||||||||||||||| |||||||||||||| ||| |||| |
|
|
| T |
5027341 |
cgatcaaatagctgaaaaaatccactaatgcatccaatttgcttctgcaattcttgattttcatctttcattgatgtcaa |
5027420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 8011580 - 8011628
Alignment:
| Q |
92 |
cgatcaaagagatgaaaaaatccagtgatgcaaccaatctgcttctgca |
140 |
Q |
| |
|
||||||||||| ||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
8011580 |
cgatcaaagagctgaaaaattccagtcatacaaccaatctgcttctgca |
8011628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University