View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18236_high_1 (Length: 833)

Name: NF18236_high_1
Description: NF18236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18236_high_1
NF18236_high_1
[»] chr3 (15 HSPs)
chr3 (188-795)||(21074502-21075100)
chr3 (563-795)||(21019562-21019795)
chr3 (9-126)||(21075154-21075271)
chr3 (188-324)||(21021126-21021262)
chr3 (33-131)||(21021319-21021417)
chr3 (363-419)||(21021073-21021129)
chr3 (696-776)||(25756711-25756791)
chr3 (684-775)||(12759410-12759502)
chr3 (640-730)||(12805919-12806012)
chr3 (685-717)||(21825911-21825943)
chr3 (684-730)||(12411174-12411221)
chr3 (684-766)||(28728967-28729050)
chr3 (684-730)||(8445846-8445892)
chr3 (685-730)||(8557158-8557204)
chr3 (688-737)||(27542937-27542986)
[»] chr8 (12 HSPs)
chr8 (684-777)||(15292754-15292847)
chr8 (684-777)||(15473123-15473216)
chr8 (684-754)||(17972194-17972264)
chr8 (684-766)||(24119762-24119844)
chr8 (684-730)||(24269621-24269667)
chr8 (684-730)||(44011053-44011099)
chr8 (684-753)||(28317437-28317506)
chr8 (664-727)||(30122187-30122253)
chr8 (684-730)||(2637621-2637668)
chr8 (684-730)||(27659468-27659515)
chr8 (684-730)||(29382390-29382437)
chr8 (684-730)||(24644861-24644907)
[»] chr2 (12 HSPs)
chr2 (687-766)||(25070154-25070233)
chr2 (576-775)||(32439981-32440183)
chr2 (684-771)||(12557697-12557784)
chr2 (684-730)||(17349380-17349426)
chr2 (684-737)||(8447072-8447125)
chr2 (685-793)||(15454732-15454838)
chr2 (687-755)||(30695462-30695530)
chr2 (684-775)||(25939181-25939272)
chr2 (684-730)||(23011792-23011838)
chr2 (698-730)||(28606207-28606239)
chr2 (684-730)||(29719260-29719307)
chr2 (581-619)||(8503214-8503252)
[»] chr7 (19 HSPs)
chr7 (682-775)||(23093331-23093424)
chr7 (686-775)||(15303605-15303694)
chr7 (640-730)||(2563795-2563887)
chr7 (684-730)||(5108589-5108635)
chr7 (687-765)||(9866535-9866613)
chr7 (640-735)||(5047411-5047509)
chr7 (685-776)||(33035496-33035588)
chr7 (684-730)||(7397219-7397265)
chr7 (684-730)||(3329687-3329734)
chr7 (684-730)||(7318296-7318343)
chr7 (684-730)||(9864355-9864402)
chr7 (684-755)||(26134752-26134823)
chr7 (686-755)||(8938243-8938313)
chr7 (684-766)||(9078190-9078272)
chr7 (684-730)||(17203047-17203093)
chr7 (687-716)||(2953599-2953628)
chr7 (685-737)||(9890207-9890260)
chr7 (697-730)||(18662478-18662511)
chr7 (686-730)||(31492955-31493000)
[»] chr5 (15 HSPs)
chr5 (641-776)||(28253258-28253396)
chr5 (630-727)||(18208281-18208380)
chr5 (684-724)||(24266990-24267030)
chr5 (684-724)||(24343621-24343661)
chr5 (686-730)||(24245573-24245618)
chr5 (684-777)||(32581910-32582003)
chr5 (563-619)||(17769539-17769595)
chr5 (549-617)||(25934646-25934714)
chr5 (684-775)||(15544074-15544165)
chr5 (684-755)||(27921406-27921477)
chr5 (684-730)||(34487661-34487707)
chr5 (684-730)||(36175157-36175203)
chr5 (687-763)||(17185489-17185566)
chr5 (687-755)||(23014614-23014682)
chr5 (687-766)||(28142390-28142471)
[»] chr6 (10 HSPs)
chr6 (684-775)||(9385978-9386069)
chr6 (687-777)||(34478551-34478641)
chr6 (687-775)||(9386070-9386158)
chr6 (687-755)||(26215391-26215459)
chr6 (684-730)||(9726045-9726092)
chr6 (684-730)||(17729175-17729222)
chr6 (684-730)||(21907455-21907502)
chr6 (685-730)||(9516809-9516855)
chr6 (720-766)||(15614171-15614217)
chr6 (684-737)||(20722199-20722251)
[»] chr1 (9 HSPs)
chr1 (687-765)||(24306950-24307028)
chr1 (684-771)||(26540919-26541006)
chr1 (698-777)||(17017699-17017778)
chr1 (684-730)||(21449112-21449159)
chr1 (684-771)||(25958132-25958219)
chr1 (684-771)||(24306294-24306381)
chr1 (684-730)||(25405659-25405706)
chr1 (684-730)||(21847657-21847703)
chr1 (722-776)||(33712725-33712779)
[»] chr4 (13 HSPs)
chr4 (684-755)||(19900603-19900674)
chr4 (664-775)||(9052674-9052788)
chr4 (684-770)||(22218590-22218676)
chr4 (684-766)||(25643486-25643568)
chr4 (551-771)||(15050071-15050294)
chr4 (551-771)||(15104130-15104353)
chr4 (684-730)||(13908877-13908924)
chr4 (684-730)||(19374842-19374888)
chr4 (684-734)||(22345044-22345094)
chr4 (684-726)||(25121259-25121301)
chr4 (687-765)||(40215312-40215390)
chr4 (684-730)||(14648918-14648964)
chr4 (686-771)||(20317766-20317851)
[»] scaffold0957 (1 HSPs)
scaffold0957 (684-727)||(3176-3219)
[»] scaffold0005 (1 HSPs)
scaffold0005 (684-730)||(168328-168374)
[»] scaffold0394 (1 HSPs)
scaffold0394 (551-609)||(14061-14119)
[»] scaffold0043 (1 HSPs)
scaffold0043 (684-730)||(89883-89929)
[»] scaffold0155 (1 HSPs)
scaffold0155 (682-730)||(36024-36073)


Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 188 - 795
Target Start/End: Complemental strand, 21075100 - 21074502
Alignment:
Q  188 tttttagcgctataacaaagggttgcaaaacatggtttaaatcttataaacgaacacaatgatattataatagatcttataataaaggatagatcatccc 287  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21075100 tttttagcgctataacaaagggttgcaaaacatggttcaaatcttataaacgaacacaattatattataatagatcttataataaaggatagatcatccc 21075001  T
Q  288 aaggctccaaatacaaagaaggtcgaatcaggataaatattctaagttataatcttacggatgtcccgtaacttgtaaaggaaggttatttaagtgtgat 387  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21075000 aaggccccaaatacaaagaaggtcgaatcaggataaatattctaagttataatcttacggatgtcccgtaacttgtaaaggaatgttatttaagtgtgat 21074901  T
Q  388 tacaattcaaattcccattaaggtgatattccaaagtcaa-catttagggttcacataaatacaaccatatctagtttaaactaccaaataatatttaaa 486  Q
    | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  21074900 tccaattcaaattcccattaaggtgatattccaaagtcaaccatttagggttcacataagtacaaccatatctagtttaaactacctaataatatttaaa 21074801  T
Q  487 ctagatccctaataacgactcaataaggacttannnnnnngctatttttgaatatttaaaacgaaaaattaaatgtgaaaatttaaatgacaattacgaa 586  Q
    ||||| |||||||||| ||||||||||||||||       | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21074800 ctagacccctaataacaactcaataaggacttatttttttggtatttttgaatatttaaaacgaaaaattaaatgtgaaaatttaaatgacaattacgaa 21074701  T
Q  587 taagtaattcaaattgcttagtc-aaaaatatcatcattatctagcaatgatgtcaaaaacttgatgattggatatatgcaactgtaccaaatcatct-- 683  Q
    |||||||||||||||||||||||  |||||||||||              ||| |||||||||||||||||||| |||||||||||||||||||||||      
T  21074700 taagtaattcaaattgcttagtcggaaaatatcatc--------------atgccaaaaacttgatgattggatttatgcaactgtaccaaatcatctat 21074615  T
Q  684 -aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaaatgaaaa 782  Q
     |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21074614 caagtaataaagtgtaagtagagtatcgtatccaccagaattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaaatgaaaa 21074515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 563 - 795
Target Start/End: Complemental strand, 21019795 - 21019562
Alignment:
Q  563 gaaaatttaaatgacaattacgaataagtaattcaaattgcttagtcaaaaatatcatcattatctagcaatgatgtcaaaaacttgatgattggatata 662  Q
    |||||||||||||||| | | |||||||||||| |||||| |||||| ||||||||| |||| |   |||| | ||||||||| ||||||||||||| ||    
T  21019795 gaaaatttaaatgacagtcatgaataagtaatttaaattgtttagtcgaaaatatcaacattcttcggcaacggtgtcaaaaaattgatgattggattta 21019696  T
Q  663 tgcaactgtaccaaatcatcta---agtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttg 759  Q
     ||||| |||||||||||||||   ||||||||||| ||||||||||||| ||||||| ||||||||||||||||||| |||| |||| ||||||| |||    
T  21019695 ggcaacagtaccaaatcatctaccaagtaataaagtataagtagagtatcttatccacaaggattgtcgttccaactaggtaagtcac-ttacttatttg 21019597  T
Q  760 ggaacaagaaaataaaatgaaaacaatatataaaag 795  Q
    || |||||||||| |||| |||||||||||||||||    
T  21019596 ggtacaagaaaat-aaataaaaacaatatataaaag 21019562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 21075271 - 21075154
Alignment:
Q  9 agcagcacagagaggagaacacagtggcagagcaaaacacgctagagttaactacaaaccatcccaaaaggttctaccataataaaacttaaataaaccc 108  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  21075271 agcagcacagagaggagaacacactggcagatcaaaacacgctagagttaactacaaaccgtcccaaaagattctaccataataaaacttaaataaaccc 21075172  T
Q  109 ttatatttgttaccacaa 126  Q
    ||||||||||||||||||    
T  21075171 ttatatttgttaccacaa 21075154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 188 - 324
Target Start/End: Complemental strand, 21021262 - 21021126
Alignment:
Q  188 tttttagcgctataacaaagggttgcaaaacatggtttaaatcttataaacgaacacaatgatattataatagatcttataataaaggatagatcatccc 287  Q
    |||||||||||| ||||| || |||||||||| |||| |||||||||||||||||||| | ||||||||||||||||||||||| || ||  |||||| |    
T  21021262 tttttagcgctacaacaatggtttgcaaaacacggttcaaatcttataaacgaacacagttatattataatagatcttataatagagcatttatcatctc 21021163  T
Q  288 aaggctccaaatacaaagaaggtcgaatcaggataaa 324  Q
    ||||| ||||||||||||||||  |||||| ||||||    
T  21021162 aaggccccaaatacaaagaaggatgaatcatgataaa 21021126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 21021417 - 21021319
Alignment:
Q  33 tggcagagcaaaacacgctagagttaactacaaaccatcccaaaaggttctaccataataaaacttaaataaacccttatatttgttaccacaagcaag 131  Q
    ||||||||||||||||| | ||||| | ||||||||  ||||||||||||||| ||||||| |||||||||||||  ||||||||||||||||||||||    
T  21021417 tggcagagcaaaacacgatggagttcattacaaaccgccccaaaaggttctactataataagacttaaataaacctatatatttgttaccacaagcaag 21021319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 363 - 419
Target Start/End: Complemental strand, 21021129 - 21021073
Alignment:
Q  363 taaaggaaggttatttaagtgtgattacaattcaaattcccattaaggtgatattcc 419  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  21021129 taaaggaaggttatttaagtgtgattccaattcatattcccattaaggtgatattcc 21021073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 696 - 776
Target Start/End: Original strand, 25756711 - 25756791
Alignment:
Q  696 gtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaaa 776  Q
    |||||||||||||||||||||| |  |||||||||| ||||| | ||||   |||||||| |||||||||| |||||||||    
T  25756711 gtaagtagagtatcgtatccacaaaaattgtcgttctaactaggcaatttgtgttacttatttgggaacaataaaataaaa 25756791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 684 - 775
Target Start/End: Original strand, 12759410 - 12759502
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaa 775  Q
    ||||||||||||| ||||||||||||||||||||| || ||||||||| |||  |   ||| | | ||||||| |||||||||| ||||||||    
T  12759410 aagtaataaagtgataagtagagtatcgtatccacaagtattgtcgtttcaaacaaaaaatccgctttacttatttgggaacaataaaataaa 12759502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 640 - 730
Target Start/End: Complemental strand, 12806012 - 12805919
Alignment:
Q  640 caaaaacttgatgattggatatatgcaactgtaccaaatcatcta---agtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| | |||| || |||| ||||||||||||| ||   |||||||||||| ||||||||||||| |||||||  |||||||||||    
T  12806012 caaaaacttgatggtcggat-taggcaagtgtaccaaatcatttaccaagtaataaagtgataagtagagtatcatatccacatggattgtcgtt 12805919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 685 - 717
Target Start/End: Complemental strand, 21825943 - 21825911
Alignment:
Q  685 agtaataaagtgtaagtagagtatcgtatccac 717  Q
    |||||||||||||||||||||||||||||||||    
T  21825943 agtaataaagtgtaagtagagtatcgtatccac 21825911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 12411174 - 12411221
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| | ||||||||||||||||||| ||||||||||||    
T  12411174 aagtaataaagtgattagtagagtatcgtatccacaaggattgtcgtt 12411221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 766
Target Start/End: Original strand, 28728967 - 28729050
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaa 766  Q
    ||||||||||||| |||||||||||||||||||||   |||||||||| |||| |   ||||| ||||||||  ||||||||||    
T  28728967 aagtaataaagtgataagtagagtatcgtatccacatagattgtcgtttcaaccaaacaattcgcgttacttgtttgggaacaa 28729050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 8445846 - 8445892
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||||||||||||||| || |||||  |||||||||||    
T  8445846 aagtaataaagtgtaagtagagtattgtgtccacatggattgtcgtt 8445892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 685 - 730
Target Start/End: Complemental strand, 8557204 - 8557158
Alignment:
Q  685 agtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    |||||||||||| |||||||||||||||||||||  |||||||||||    
T  8557204 agtaataaagtgataagtagagtatcgtatccacatggattgtcgtt 8557158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 737
Target Start/End: Complemental strand, 27542986 - 27542937
Alignment:
Q  688 aataaagtgtaagtagagtatcgtatccactaggattgtcgttccaacta 737  Q
    |||||||| |||||||||||||||||||||  | ||||| ||||||||||    
T  27542986 aataaagtataagtagagtatcgtatccacatgaattgttgttccaacta 27542937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 6e-24; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 684 - 777
Target Start/End: Original strand, 15292754 - 15292847
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaaat 777  Q
    ||||||||||||||||||||||| ||| || |||  ||||||||||||||| || | ||||||||||||||| |||||||||||||||||||||    
T  15292754 aagtaataaagtgtaagtagagtttcggattcacatggattgtcgttccaattaggcaattcacgttacttatttgggaacaagaaaataaaat 15292847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 684 - 777
Target Start/End: Original strand, 15473123 - 15473216
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaaat 777  Q
    ||||||||||||||||||||||| ||| || |||  ||||||||||||||| || | ||||||||||||||| |||||||||||||||||||||    
T  15473123 aagtaataaagtgtaagtagagtttcggattcacatggattgtcgttccaattaggcaattcacgttacttatttgggaacaagaaaataaaat 15473216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 684 - 754
Target Start/End: Original strand, 17972194 - 17972264
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttactt 754  Q
    |||||||||||||||||||||||||||||||| |  |||||||| ||| ||||| | ||||||||||||||    
T  17972194 aagtaataaagtgtaagtagagtatcgtatccgcatggattgtcattctaactaggcaattcacgttactt 17972264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 684 - 766
Target Start/End: Complemental strand, 24119844 - 24119762
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaa 766  Q
    |||| |||||||||||||||||||| ||||||||  ||||| |||||||||||| | |||||||  |||||| ||||| ||||    
T  24119844 aagttataaagtgtaagtagagtattgtatccacatggattttcgttccaactaagaaattcacactacttatttgggtacaa 24119762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 24269621 - 24269667
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||    
T  24269621 aagtaataaagtgtaagtagagtatcgtatccacagggattgtcgtt 24269667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 684 - 730
Target Start/End: Complemental strand, 44011099 - 44011053
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||    
T  44011099 aagtaataaagtgtaagtagagtatcgtatccacatggattgtcgtt 44011053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 684 - 753
Target Start/End: Original strand, 28317437 - 28317506
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttact 753  Q
    |||||||||||||||||||||||||| |||| ||  | ||||| ||| |||||| | |||||||||||||    
T  28317437 aagtaataaagtgtaagtagagtatcatatcaacatgtattgttgtttcaactaggcaattcacgttact 28317506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 664 - 727
Target Start/End: Complemental strand, 30122253 - 30122187
Alignment:
Q  664 gcaactgtaccaaatca---tctaagtaataaagtgtaagtagagtatcgtatccactaggattgtc 727  Q
    |||| ||||||||||||   || |||||||||||||||||||||||||| |||||||  ||||||||    
T  30122253 gcaagtgtaccaaatcactttccaagtaataaagtgtaagtagagtatcatatccacatggattgtc 30122187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 2637621 - 2637668
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| |||||||||||||||||||||  |||||||||||    
T  2637621 aagtaataaagtgataagtagagtatcgtatccacatggattgtcgtt 2637668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 27659468 - 27659515
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| |||||||||||||||||| || ||||||||||||    
T  27659468 aagtaataaagtgataagtagagtatcgtatctacaaggattgtcgtt 27659515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 730
Target Start/End: Complemental strand, 29382437 - 29382390
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| |||||||||||||||||||||  |||||||||||    
T  29382437 aagtaataaagtgataagtagagtatcgtatccacagggattgtcgtt 29382390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 24644861 - 24644907
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||||||||||||||| ||||||||  ||||| |||||    
T  24644861 aagtaataaagtgtaagtagagtattgtatccacatggattatcgtt 24644907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 9e-23; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 687 - 766
Target Start/End: Original strand, 25070154 - 25070233
Alignment:
Q  687 taataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaa 766  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||   ||||||||||||||| ||||||||||    
T  25070154 taataaagtgtaagtagagtatcgcatccacaaggattgtcgttccaactagacaattcacgttacttatttgggaacaa 25070233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 576 - 775
Target Start/End: Complemental strand, 32440183 - 32439981
Alignment:
Q  576 acaattacgaataagtaattcaaattgcttagtcaaaaatatcatc-attatctagcaatgatgtcaaaaacttgatgattggatatatgcaactgtacc 674  Q
    |||||||||||||| ||||| ||||||| ||||  ||||||||||| ||  || |||||  | ||||||||||||||| | ||||  |||||| ||||||    
T  32440183 acaattacgaataaataatttaaattgcgtagttgaaaatatcatccatcctc-agcaacaacgtcaaaaacttgatggtcggattcatgcaagtgtacc 32440085  T
Q  675 aaatcatcta---agtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaa 771  Q
    ||||  | ||   || |||||||||||| || |||||||||||||| |||||| ||||| ||| || | ||||   |||||||| ||| |||||||||||    
T  32440084 aaattgtttaccaagaaataaagtgtaaataaagtatcgtatccacgaggattatcgtttcaattaggcaatttgtgttacttatttgagaacaagaaaa 32439985  T
Q  772 taaa 775  Q
    ||||    
T  32439984 taaa 32439981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 684 - 771
Target Start/End: Complemental strand, 12557784 - 12557697
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaa 771  Q
    ||||||||||||||||||||| ||||| |||||| ||||||| |||| ||| || | ||||   ||||||||||||||||||| ||||    
T  12557784 aagtaataaagtgtaagtagaatatcgaatccacaaggattgccgtttcaattaggcaatttgtgttacttacttgggaacaataaaa 12557697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 17349380 - 17349426
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgtt 730  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||    
T  17349380 aagtaataaagtgtaagtagagtatcgtatccacaaagattgtcgtt 17349426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 684 - 737
Target Start/End: Complemental strand, 8447125 - 8447072
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaacta 737  Q
    |||||||||||| |||||||| ||||||||||||  ||||||||||||||||||    
T  8447125 aagtaataaagtataagtagattatcgtatccacatggattgtcgttccaacta 8447072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 685 - 793
Target Start/End: Original strand, 15454732 - 15454838
Alignment:
Q  685 agtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaaatgaaaaca 784  Q
    ||||||||||||||||||||||||| ||||||    ||||||| ||||||||| | |||||| |||||||| |||| ||| |  ||||||||  |||| |    
T  15454732 agtaataaagtgtaagtagagtatcatatccatcgagattgtcattccaactaggcaattcatgttacttatttggaaactattaaataaaa--aaaaaa 15454829  T
Q  785 atatataaa 793  Q
    |||||||||    
T  15454830 atatataaa 15454838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 687 - 755
Target Start/End: Complemental strand, 30695530 - 30695462
Alignment:
Q  687 taataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttactta 755  Q
    |||||||||||||||||||||||| ||||||   ||||||  |||||| || |||||||||||||||||    
T  30695530 taataaagtgtaagtagagtatcggatccacagagattgtaattccaagtaggtaattcacgttactta 30695462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 684 - 775
Target Start/End: Original strand, 25939181 - 25939272
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaa 775  Q
    ||||||||||||||||||| |||||||||||||  |||||| ||||| |||| |   ||||||||||||||   || |||||| ||||||||    
T  25939181 aagtaataaagtgtaagtaaagtatcgtatccataaggattttcgtttcaaccaaacaattcacgttacttgtctgagaacaataaaataaa 25939272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 730
Target Start/End: Complemental strand, 23011838 - 23011792
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||||||    
T  23011838 aagtaataaagtgtaagtagattattgtatccacaaggattgtcgtt 23011792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 698 - 730
Target Start/End: Complemental strand, 28606239 - 28606207
Alignment:
Q  698 aagtagagtatcgtatccactaggattgtcgtt 730  Q
    |||||||||||||||||||||||||||||||||    
T  28606239 aagtagagtatcgtatccactaggattgtcgtt 28606207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 730
Target Start/End: Complemental strand, 29719307 - 29719260
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||||||    
T  29719307 aagtaataaagtgataagtagattatcgtatccacaaggattgtcgtt 29719260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 581 - 619
Target Start/End: Complemental strand, 8503252 - 8503214
Alignment:
Q  581 tacgaataagtaattcaaattgcttagtcaaaaatatca 619  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  8503252 tacgaataagtaattcaaattgcttagtcggaaatatca 8503214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 682 - 775
Target Start/End: Original strand, 23093331 - 23093424
Alignment:
Q  682 ctaagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaa 775  Q
    ||||||||||||||||||||||||||| ||||| ||  ||||||||||| |||||| | ||||||  ||||||| |||||||||||||||||||    
T  23093331 ctaagtaataaagtgtaagtagagtattgtatctacgtggattgtcgtttcaactaggcaattcaatttacttatttgggaacaagaaaataaa 23093424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 686 - 775
Target Start/End: Complemental strand, 15303694 - 15303605
Alignment:
Q  686 gtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaa 775  Q
    ||||||||||||||||| ||||||||||| ||  | |||||||||||||||| | ||||||||||||||| ||| |||||| ||||||||    
T  15303694 gtaataaagtgtaagtaaagtatcgtatctacacgaattgtcgttccaactaggaaattcacgttacttatttgagaacaataaaataaa 15303605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 640 - 730
Target Start/End: Original strand, 2563795 - 2563887
Alignment:
Q  640 caaaaacttgatgattggatatatgcaactgtaccaaatcatcta---agtaataaagtgtaagtagagtatcgtatccactaggattgtcgtt 730  Q
    |||||||||||||   |||| ||||||| ||||||||||| | ||   ||||||||||||||||||||||||||||||||| ||||||||||||    
T  2563795 caaaaacttgatgtgcggat-tatgcaagtgtaccaaatcgtttaccaagtaataaagtgtaagtagagtatcgtatccacaaggattgtcgtt 2563887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 5108589 - 5108635
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgtt 730  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  5108589 aagtaataaagtgtaagtagagtatcgtatccacaaggattgtcgtt 5108635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 687 - 765
Target Start/End: Complemental strand, 9866613 - 9866535
Alignment:
Q  687 taataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaaca 765  Q
    ||||||||||||||||||||||| ||||||| |  |||||||||| |||||   ||||||||||||||| |||| ||||    
T  9866613 taataaagtgtaagtagagtatcatatccacaataattgtcgttctaactagacaattcacgttacttatttggaaaca 9866535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 640 - 735
Target Start/End: Complemental strand, 5047509 - 5047411
Alignment:
Q  640 caaaaacttgatgattggatatatgcaactgtaccaaatcatcta---agtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaac 735  Q
    ||||||||||||| | |||| || |||| ||||||||||||| ||   |||||||||||||||||||| ||||||| | || | |||||||||| ||||    
T  5047509 caaaaacttgatggtcggatttaggcaagtgtaccaaatcatttaccaagtaataaagtgtaagtagattatcgtacctacgaagattgtcgtttcaac 5047411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 685 - 776
Target Start/End: Original strand, 33035496 - 33035588
Alignment:
Q  685 agtaataaagtg-taagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaaa 776  Q
    |||||||||||| || ||||||||||| ||| ||  || ||||||| ||||||| | ||||||| ||||||| ||| ||||||||||||||||    
T  33035496 agtaataaagtgataggtagagtatcgcatctacgtggcttgtcgtaccaactaggcaattcacattacttatttgagaacaagaaaataaaa 33035588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 7397219 - 7397265
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgtt 730  Q
    |||||||||||||||| |||||||||||||||||  |||||||||||    
T  7397219 aagtaataaagtgtaactagagtatcgtatccacatggattgtcgtt 7397265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 730
Target Start/End: Complemental strand, 3329734 - 3329687
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| |||||||||||||||||||||  |||||||||||    
T  3329734 aagtaataaagtgataagtagagtatcgtatccacatggattgtcgtt 3329687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 7318296 - 7318343
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| |||||||||||||||||||||  |||||||||||    
T  7318296 aagtaataaagtgataagtagagtatcgtatccacatggattgtcgtt 7318343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 730
Target Start/End: Complemental strand, 9864402 - 9864355
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| ||||||||||||| ||||||| ||||||||||||    
T  9864402 aagtaataaagtgataagtagagtatcatatccacaaggattgtcgtt 9864355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 755
Target Start/End: Complemental strand, 26134823 - 26134752
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttactta 755  Q
    |||||||||| |||||||||||||||||||||||   || |||| || ||||||   |||||||||||||||    
T  26134823 aagtaataaaatgtaagtagagtatcgtatccacatagactgtcatttcaactagacaattcacgttactta 26134752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 686 - 755
Target Start/End: Complemental strand, 8938313 - 8938243
Alignment:
Q  686 gtaataaagt-gtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttactta 755  Q
    |||||||||| ||||||||||||||  |||||   |||||||||||||||||| | ||||||| |||||||    
T  8938313 gtaataaagtagtaagtagagtatcaaatccaaatggattgtcgttccaactaggcaattcacattactta 8938243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 766
Target Start/End: Original strand, 9078190 - 9078272
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaa 766  Q
    |||||||| | |||||||||| ||||||||||||  ||||| |||||| ||||| | ||||  ||||||||| |||| |||||    
T  9078190 aagtaatagaatgtaagtagattatcgtatccacagggattatcgttcaaactaagcaatttgcgttacttatttggtaacaa 9078272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 17203047 - 17203093
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgtt 730  Q
    |||||||||||| ||||||||||||||||| |||  |||||||||||    
T  17203047 aagtaataaagtataagtagagtatcgtattcacggggattgtcgtt 17203093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 716
Target Start/End: Original strand, 2953599 - 2953628
Alignment:
Q  687 taataaagtgtaagtagagtatcgtatcca 716  Q
    ||||||||||||||||||||||||||||||    
T  2953599 taataaagtgtaagtagagtatcgtatcca 2953628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 685 - 737
Target Start/End: Original strand, 9890207 - 9890260
Alignment:
Q  685 agtaataaagt-gtaagtagagtatcgtatccactaggattgtcgttccaacta 737  Q
    ||||||||||| |||||||||||||||||||  | ||||| |||||||||||||    
T  9890207 agtaataaagtagtaagtagagtatcgtatctgcaaggatagtcgttccaacta 9890260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 730
Target Start/End: Original strand, 18662478 - 18662511
Alignment:
Q  697 taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||||||||||| ||||||||||||    
T  18662478 taagtagagtatcgtatccacaaggattgtcgtt 18662511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 730
Target Start/End: Original strand, 31492955 - 31493000
Alignment:
Q  686 gtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||| |||||||||||||||||||||  |||||||||||    
T  31492955 gtaataaagtgataagtagagtatcgtatccacatggattgtcgtt 31493000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 641 - 776
Target Start/End: Original strand, 28253258 - 28253396
Alignment:
Q  641 aaaaacttgatgattggatatatgcaactgtaccaaatcatcta---agtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaacta 737  Q
    |||||||||||| | |||| ||||||| ||||||||||| | ||   |||||||||||||||||||| |||||||| |||  ||||| ||||||||| ||    
T  28253258 aaaaacttgatggtcggatttatgcaaatgtaccaaatcgtttaccaagtaataaagtgtaagtagaatatcgtattcacagggattatcgttccaagta 28253357  T
Q  738 tgtaattcacgttacttacttgggaacaagaaaataaaa 776  Q
     | ||||| ||||||||| ||| ||||||  ||||||||    
T  28253358 ggaaattcgcgttacttatttgagaacaactaaataaaa 28253396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 630 - 727
Target Start/End: Complemental strand, 18208380 - 18208281
Alignment:
Q  630 gcaatgatgtcaaaaacttgatgattggatatatgcaactgtaccaaatcatcta---agtaataaagtgtaagtagagtatcgtatccactaggattgt 726  Q
    |||| |||| ||||||||||||| | |||| || |||| ||||||||||| | ||   |||||||||||||||||||||||||||||||||  |||||||    
T  18208380 gcaacgatgccaaaaacttgatggtcggat-taggcaagtgtaccaaatcgtttacaaagtaataaagtgtaagtagagtatcgtatccacatggattgt 18208282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 684 - 724
Target Start/End: Complemental strand, 24267030 - 24266990
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggatt 724  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  24267030 aagtaataaagtgtaagtagagtatcgtatccacaaggatt 24266990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 684 - 724
Target Start/End: Complemental strand, 24343661 - 24343621
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggatt 724  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  24343661 aagtaataaagtgtaagtagagtatcgtatccacaaggatt 24343621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 686 - 730
Target Start/End: Complemental strand, 24245618 - 24245573
Alignment:
Q  686 gtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||    
T  24245618 gtaataaagtgataagtagagtatcgtatccacaaggattgtcgtt 24245573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 684 - 777
Target Start/End: Original strand, 32581910 - 32582003
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaaat 777  Q
    |||||||||||| ||||| ||||||| ||| ||  ||||||||||||  || || | |||| || |||||||||| ||||||| ||||||||||    
T  32581910 aagtaataaagtataagttgagtatcttattcataaggattgtcgttttaattaggcaatttacattacttactttggaacaataaaataaaat 32582003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 563 - 619
Target Start/End: Complemental strand, 17769595 - 17769539
Alignment:
Q  563 gaaaatttaaatgacaattacgaataagtaattcaaattgcttagtcaaaaatatca 619  Q
    ||||| |||||| ||| |||| ||||||||||| |||||||||||| ||||||||||    
T  17769595 gaaaaattaaataacagttacaaataagtaatttaaattgcttagtgaaaaatatca 17769539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 549 - 617
Target Start/End: Complemental strand, 25934714 - 25934646
Alignment:
Q  549 gaaaaattaaatgtgaaaatttaaatgacaattacgaataagtaattcaaattgcttagtcaaaaatat 617  Q
    ||||||| |||||  ||||||||||||||| |||||||||||||||| || |  ||||||| |||||||    
T  25934714 gaaaaataaaatgcaaaaatttaaatgacatttacgaataagtaatttaattaacttagtcgaaaatat 25934646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 775
Target Start/End: Original strand, 15544074 - 15544165
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaa 775  Q
    |||||||||| ||| ||||||||||||||| ||   ||||| |||||| ||||| | ||| | ||||||||| |||| ||||| ||||||||    
T  15544074 aagtaataaactgtcagtagagtatcgtatacatagggattatcgttcaaactaggcaatccgcgttacttatttggaaacaataaaataaa 15544165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 755
Target Start/End: Complemental strand, 27921477 - 27921406
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttactta 755  Q
    |||||||||||||||||||| |||||||||  ||  || |||| ||| |||||| | |||||||||||||||    
T  27921477 aagtaataaagtgtaagtagtgtatcgtatatacatgggttgttgtttcaactaggcaattcacgttactta 27921406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 34487661 - 34487707
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||||||||||| |||| |||||||  |||||||||||    
T  34487661 aagtaataaagtgtaagtagaatatcatatccacatggattgtcgtt 34487707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 36175157 - 36175203
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||||  |||||||||||||||||  ||||||||||||    
T  36175157 aagtaataaagtgtttgtagagtatcgtatccataaggattgtcgtt 36175203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 763
Target Start/End: Original strand, 17185489 - 17185566
Alignment:
Q  687 taataaagtg-taagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaa 763  Q
    |||||||||| |||||||||||||||||| ||  ||||||||||| |||| |   |||||||||||| || |||||||    
T  17185489 taataaagtgataagtagagtatcgtatctacagggattgtcgtttcaaccaaacaattcacgttacgtatttgggaa 17185566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 755
Target Start/End: Complemental strand, 23014682 - 23014614
Alignment:
Q  687 taataaagtg-taagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttactta 755  Q
    |||||||||| |||||||||||| ||||||   |||||||||||| |||||| | |||||||||||||||    
T  23014682 taataaagtgataagtagagtattgtatccta-aggattgtcgtttcaactaggcaattcacgttactta 23014614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 766
Target Start/End: Original strand, 28142390 - 28142471
Alignment:
Q  687 taataaagt-gtaagtagagt-atcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaa 766  Q
    ||||||||| ||||| ||||| ||||||| |||  |||||||||||||||||||| ||||   |||||||| ||||||||||    
T  28142390 taataaagtagtaagcagagttatcgtattcacatggattgtcgttccaactatgcaatttgtgttacttatttgggaacaa 28142471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 684 - 775
Target Start/End: Original strand, 9385978 - 9386069
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaa 775  Q
    ||||||||||||| |||||||||  |||||||||  ||||||||||| |||||| | ||||||| ||||||| || ||||||||||||||||    
T  9385978 aagtaataaagtgcaagtagagtcgcgtatccacatggattgtcgtttcaactaggcaattcacattacttatttaggaacaagaaaataaa 9386069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 687 - 777
Target Start/End: Original strand, 34478551 - 34478641
Alignment:
Q  687 taataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaaat 777  Q
    ||||||||||||||||||||||||||||||| ||||||| | || |||||| | |||||| |||||||  |||| ||||| ||||||||||    
T  34478551 taataaagtgtaagtagagtatcgtatccacaaggattgacatttcaactaggcaattcatgttacttttttggaaacaataaaataaaat 34478641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 687 - 775
Target Start/End: Original strand, 9386070 - 9386158
Alignment:
Q  687 taataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaa 775  Q
    |||||||||||||||||||||||||||||||   |||| ||| | |||||| | |||||| |||||||| || ||||||||||||||||    
T  9386070 taataaagtgtaagtagagtatcgtatccacatagattatcgattcaactaggaaattcaagttacttatttaggaacaagaaaataaa 9386158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 687 - 755
Target Start/End: Complemental strand, 26215459 - 26215391
Alignment:
Q  687 taataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttactta 755  Q
    ||||||||||||||||||||||||||||||    |||||||||| ||| || | |||||||||||||||    
T  26215459 taataaagtgtaagtagagtatcgtatccatatagattgtcgtttcaattaggcaattcacgttactta 26215391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 9726045 - 9726092
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| |||||||||||||||||||||  |||||||||||    
T  9726045 aagtaataaagtgataagtagagtatcgtatccacatggattgtcgtt 9726092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 17729175 - 17729222
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| ||||||||||||||||||||| | ||||||||||    
T  17729175 aagtaataaagtgataagtagagtatcgtatccacaaagattgtcgtt 17729222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 21907455 - 21907502
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  21907455 aagtaataaagtgataagtaaagtatcgtatccacaaggattgtcgtt 21907502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 685 - 730
Target Start/End: Original strand, 9516809 - 9516855
Alignment:
Q  685 agtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    |||||||||||| |||||||||||||||||||||  |||||||||||    
T  9516809 agtaataaagtgataagtagagtatcgtatccacatggattgtcgtt 9516855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 720 - 766
Target Start/End: Complemental strand, 15614217 - 15614171
Alignment:
Q  720 ggattgtcgttccaactatgtaattcacgttacttacttgggaacaa 766  Q
    ||||||| |||||||||| | ||||||||||||||| ||||||||||    
T  15614217 ggattgttgttccaactaggcaattcacgttacttatttgggaacaa 15614171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 684 - 737
Target Start/End: Complemental strand, 20722251 - 20722199
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaacta 737  Q
    |||||||||||| ||||||||||||  ||||||| ||||||||| |||||||||    
T  20722251 aagtaataaagt-taagtagagtataatatccacaaggattgtctttccaacta 20722199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 687 - 765
Target Start/End: Complemental strand, 24307028 - 24306950
Alignment:
Q  687 taataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaaca 765  Q
    ||||||||||||||||||||||||||| ||   ||||||||||| |||||| | ||||||||||||||| |||||||||    
T  24307028 taataaagtgtaagtagagtatcgtattcatagggattgtcgtttcaactaagcaattcacgttacttatttgggaaca 24306950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 684 - 771
Target Start/End: Original strand, 26540919 - 26541006
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaa 771  Q
    |||||||||||||||||||||||||||||||||| |||||| || |||||||||   ||||  ||||||||| |||||| ||| ||||    
T  26540919 aagtaataaagtgtaagtagagtatcgtatccacaaggattatcattccaactagacaatttgcgttacttatttgggagcaataaaa 26541006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 698 - 777
Target Start/End: Complemental strand, 17017778 - 17017699
Alignment:
Q  698 aagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaaat 777  Q
    ||||||||||||||||| ||  ||||| || ||||||||| | ||||||||||||||| |  ||||||| ||||||||||    
T  17017778 aagtagagtatcgtatcgacatggattttcattccaactaggcaattcacgttacttattatggaacaataaaataaaat 17017699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 21449112 - 21449159
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  21449112 aagtaataaagtgataagtagagtatcgtatccacaaggattgtcgtt 21449159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 684 - 771
Target Start/End: Original strand, 25958132 - 25958219
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaa 771  Q
    ||||||| |||||||| ||||||||| |||||||  |||||||||||||||| |   |||| | |||||||| |||||||||| ||||    
T  25958132 aagtaatgaagtgtaaatagagtatcatatccacatggattgtcgttccaaccagacaatttatgttacttatttgggaacaataaaa 25958219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 684 - 771
Target Start/End: Complemental strand, 24306381 - 24306294
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaa 771  Q
    ||||||||||||| |||||||||||||||||||||  |||||| |||| |||| |  |||||| ||||||||| ||| |||||| ||||    
T  24306381 aagtaataaagtgataagtagagtatcgtatccacagggattg-cgtttcaaccaaataattcgcgttacttatttgagaacaataaaa 24306294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 730
Target Start/End: Complemental strand, 25405706 - 25405659
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| |||||| |||||||||||||| ||||||||||||    
T  25405706 aagtaataaagtgataagtaaagtatcgtatccacaaggattgtcgtt 25405659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 21847657 - 21847703
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgtt 730  Q
    |||||||||||| |||||||||||| ||||||||  |||||||||||    
T  21847657 aagtaataaagtctaagtagagtattgtatccacatggattgtcgtt 21847703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 722 - 776
Target Start/End: Original strand, 33712725 - 33712779
Alignment:
Q  722 attgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaataaaa 776  Q
    |||||||||||||||| | ||||| | ||||||| || |||||||||||||||||    
T  33712725 attgtcgttccaactaggaaattcgcattacttatttaggaacaagaaaataaaa 33712779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 684 - 755
Target Start/End: Original strand, 19900603 - 19900674
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttactta 755  Q
    |||||||||||||||||||||||||| ||| ||| | ||||||||||||||||| | ||||||| |||||||    
T  19900603 aagtaataaagtgtaagtagagtatcatattcacaaagattgtcgttccaactaggcaattcacattactta 19900674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 664 - 775
Target Start/End: Original strand, 9052674 - 9052788
Alignment:
Q  664 gcaactgtaccaaatcatcta---agtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgg 760  Q
    |||| ||||||||||||| ||   ||||||||| ||||||||||||||||||||| | | |||||| ||| |||| |   ||||||||||||||| || |    
T  9052674 gcaagtgtaccaaatcatttaccaagtaataaaatgtaagtagagtatcgtatccgcaaagattgttgtttcaaccaaacaattcacgttacttattttg 9052773  T
Q  761 gaacaagaaaataaa 775  Q
    |||||| ||||||||    
T  9052774 gaacaataaaataaa 9052788  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 684 - 770
Target Start/End: Complemental strand, 22218676 - 22218590
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaa 770  Q
    |||||||||||||||||||||||||||||||||  | |||||| ||||||||||   ||||  | ||| ||| ||||||||||||||    
T  22218676 aagtaataaagtgtaagtagagtatcgtatccataaagattgttgttccaactagaaaatttgcattatttatttgggaacaagaaa 22218590  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 684 - 766
Target Start/End: Original strand, 25643486 - 25643568
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaa 766  Q
    |||||||||||||||| |||||||||||||||||  || ||||| || ||| || | |||| |||||||||| ||||||||||    
T  25643486 aagtaataaagtgtaactagagtatcgtatccacaggggttgtcatttcaattaggcaatttacgttacttatttgggaacaa 25643568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 551 - 771
Target Start/End: Complemental strand, 15050294 - 15050071
Alignment:
Q  551 aaaattaaatgtgaaaatttaaatgacaattacgaataagtaattcaaattgcttagtcaaaaatatcatcattatctagcaatgatgtcaaaaacttga 650  Q
    ||||| ||||| ||||  |||||||||| |||| ||||||||||||||||| ||||||| | ||||| | || | |    || || |  |||||||||||    
T  15050294 aaaataaaatgagaaagattaaatgacagttacaaataagtaattcaaattacttagtcgataatataaacaatcttcgacagtggtagcaaaaacttga 15050195  T
Q  651 tgattggatatatgcaactgtaccaaatcatcta---agtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcac 747  Q
    || | |||| || |||| |||| |||||||| ||   |||||||||||||||||||| || |||   |||  |||||||| |||||||||   ||||  |    
T  15050194 tggtcggatttaggcaagtgtatcaaatcatttaccaagtaataaagtgtaagtagaataccgtgaacacatggattgtcattccaactagacaatttgc 15050095  T
Q  748 gttacttacttgggaacaagaaaa 771  Q
    |||||||| |||||||||| ||||    
T  15050094 gttacttatttgggaacaataaaa 15050071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 551 - 771
Target Start/End: Original strand, 15104130 - 15104353
Alignment:
Q  551 aaaattaaatgtgaaaatttaaatgacaattacgaataagtaattcaaattgcttagtcaaaaatatcatcattatctagcaatgatgtcaaaaacttga 650  Q
    ||||| ||||| ||||  |||||||||| |||| ||||||||||||||||| ||||||| | ||||| | || | |    || || |  |||||||||||    
T  15104130 aaaataaaatgagaaagattaaatgacagttacaaataagtaattcaaattacttagtcgataatataaacaatcttcgacagtggtagcaaaaacttga 15104229  T
Q  651 tgattggatatatgcaactgtaccaaatcatcta---agtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcac 747  Q
    || | |||| || |||| |||| |||||||| ||   |||||||||||||||||||| || |||   |||  |||||||| |||||||||   ||||  |    
T  15104230 tggtcggatttaggcaagtgtatcaaatcatttaccaagtaataaagtgtaagtagaataccgtgaacacatggattgtcattccaactagacaatttgc 15104329  T
Q  748 gttacttacttgggaacaagaaaa 771  Q
    |||||||| |||||||||| ||||    
T  15104330 gttacttatttgggaacaataaaa 15104353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 13908877 - 13908924
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  13908877 aagtaataaagtgataagtagagtatcgtatccacaaggattgtcgtt 13908924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 730
Target Start/End: Complemental strand, 19374888 - 19374842
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgtt 730  Q
    |||||||||| ||||||||||||||||||||||||  ||||||||||    
T  19374888 aagtaataaaatgtaagtagagtatcgtatccactgagattgtcgtt 19374842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 734
Target Start/End: Original strand, 22345044 - 22345094
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaa 734  Q
    ||||||||||| ||| ||||||||||||||||||  |||||||||||||||    
T  22345044 aagtaataaagagtatgtagagtatcgtatccacatggattgtcgttccaa 22345094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 684 - 726
Target Start/End: Complemental strand, 25121301 - 25121259
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgt 726  Q
    ||||||||||||||||||| |||||||||||||| ||||||||    
T  25121301 aagtaataaagtgtaagtatagtatcgtatccacaaggattgt 25121259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 687 - 765
Target Start/End: Complemental strand, 40215390 - 40215312
Alignment:
Q  687 taataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaaca 765  Q
    ||||||||| |||||||| |||||||||||| | ||| |  |||||||||| | ||||||| ||||||| |||||||||    
T  40215390 taataaagtttaagtagattatcgtatccacaaagatagatgttccaactaggcaattcacattacttatttgggaaca 40215312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 730
Target Start/End: Original strand, 14648918 - 14648964
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  14648918 aagtaataaagtgataagtagagtatcgtatccac-aggattgtcgtt 14648964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 771
Target Start/End: Complemental strand, 20317851 - 20317766
Alignment:
Q  686 gtaataaagtgtaagtagagtatcgtatccactaggattgtcgttccaactatgtaattcacgttacttacttgggaacaagaaaa 771  Q
    |||||||| ||||||||||||||||||| |||  | |||||||||| |||||   ||||||| ||| ||| || ||||||| ||||    
T  20317851 gtaataaaatgtaagtagagtatcgtattcacatgaattgtcgttctaactagaaaattcacattatttatttaggaacaataaaa 20317766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 727
Target Start/End: Original strand, 3176 - 3219
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtc 727  Q
    ||||||||||||||| ||||||||||||||||||  ||||||||    
T  3176 aagtaataaagtgtatgtagagtatcgtatccacacggattgtc 3219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 684 - 730
Target Start/End: Complemental strand, 168374 - 168328
Alignment:
Q  684 aagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  168374 aagtaataaagtgataagtagagtatcgtatccac-aggattgtcgtt 168328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 551 - 609
Target Start/End: Complemental strand, 14119 - 14061
Alignment:
Q  551 aaaattaaatgtgaaaatttaaatgacaattacgaataagtaattcaaattgcttagtc 609  Q
    ||||| ||||||||||  |||||||||| |||| ||||||||||| ||||| |||||||    
T  14119 aaaataaaatgtgaaagattaaatgacagttacaaataagtaattaaaattacttagtc 14061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 684 - 730
Target Start/End: Complemental strand, 89929 - 89883
Alignment:
Q  684 aagtaataaagtgtaagtagagtatcgtatccactaggattgtcgtt 730  Q
    |||||||||||||||||||||||||| |||| || || |||||||||    
T  89929 aagtaataaagtgtaagtagagtatcatatctacaagtattgtcgtt 89883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 682 - 730
Target Start/End: Complemental strand, 36073 - 36024
Alignment:
Q  682 ctaagtaataaagtg-taagtagagtatcgtatccactaggattgtcgtt 730  Q
    ||||||||||||||| |||||||||||||||||||||  | |||||||||    
T  36073 ctaagtaataaagtgataagtagagtatcgtatccacatgaattgtcgtt 36024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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