View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18236_high_10 (Length: 357)
Name: NF18236_high_10
Description: NF18236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18236_high_10 |
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| [»] scaffold0179 (1 HSPs) |
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| [»] scaffold0051 (4 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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| [»] scaffold0177 (1 HSPs) |
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Alignment Details
Target: scaffold0179 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 1184 - 1512
Alignment:
| Q |
18 |
atttcatccagcactttcttgcagaatttgcatcttcacatgttgaaagtgatttatgtttccttatattgctaactattaaaagttgcggaattctttt |
117 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1184 |
atttcatccaacactatcttgcagaatttgcatcttcacatgttgaaagtgatttatgtttccttatattgctaactattaaaagttgcggaattctttt |
1283 |
T |
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| Q |
118 |
aaaagttatgcattccttgagcccgatactttcaaatccttcatgaggctatctaaaaccttgctatgtttgttgctatctaatgcttcaaggaattctt |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1284 |
aaaagttatgcattccttgagcccgattctttcaaatccttcttgaggctatctaaaaccttgctatgtttgttgctatctaatgcttcaaggaatactt |
1383 |
T |
|
| Q |
218 |
ggtttattcaaattttagttaattgtttgtcactctagatatttacaaatttcataaagtggtaacatgttttttatgatgtgtgttgctgagtggtatt |
317 |
Q |
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| T |
1384 |
ggtttattcaaattttagttaattgtttgtcactctagatatttacaaacttcataaagtggtaacctgttttttatgatgtgtgttgctgagtggtatt |
1483 |
T |
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| Q |
318 |
ggatggaaggatgcagtttgctgttctct |
346 |
Q |
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| T |
1484 |
ggatggaaggatgcagtttgctgttctct |
1512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 127; Significance: 2e-65; HSPs: 4)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 3309 - 3167
Alignment:
| Q |
18 |
atttcatccagcactttcttgcagaatttgcatcttcacatgttgaaagtgatttatgtttccttatattgctaactattaaaagttgcggaattctttt |
117 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
3309 |
atttcatccaacactttcttgcagaatttgcatcttcacatgttgaaagtgatttatgtttccttatattgctaactattaaatgttgcggaattatttt |
3210 |
T |
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| Q |
118 |
aaaagttatgcattccttgagcccgatactttcaaatccttca |
160 |
Q |
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| T |
3209 |
aaaagttatgcattccttgagcccgataccttcaaatccttca |
3167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 432 - 290
Alignment:
| Q |
18 |
atttcatccagcactttcttgcagaatttgcatcttcacatgttgaaagtgatttatgtttccttatattgctaactattaaaagttgcggaattctttt |
117 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
432 |
atttcatccaacactttcttgcagaatttgcatcttcacatgttgaaagtgatttatgtttccttatattgctaactattaaatgttgcggaattatttt |
333 |
T |
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| Q |
118 |
aaaagttatgcattccttgagcccgatactttcaaatccttca |
160 |
Q |
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| T |
332 |
aaaagttatgcatttcttgagcccgataccttcaaatccttca |
290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 6479 - 6426
Alignment:
| Q |
157 |
ttcatgaggctatctaaaaccttgctatgtttgttgctatctaatgcttcaagg |
210 |
Q |
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| T |
6479 |
ttcatgaggctatctaaagccttgctatgtttgttgctatctaatgcttcaagg |
6426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 7462 - 7409
Alignment:
| Q |
157 |
ttcatgaggctatctaaaaccttgctatgtttgttgctatctaatgcttcaagg |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7462 |
ttcatgaggctatctaaagccttgctatgtttgttgctatctaatgcttcaagg |
7409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 207 - 345
Target Start/End: Complemental strand, 118789 - 118650
Alignment:
| Q |
207 |
aaggaattcttggtttattcaaattttagttaattgtttgtcactctagatatttacaaatttcataaagtggtaacatgttttttatgatgtgtgttgc |
306 |
Q |
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|||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| ||||| ||||| |
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| T |
118789 |
aaggaattcttggtttcttccaattttggttaattgtttgtcactctagatatttac-cacttcataaagtggtaacctgttttttataatgtgagttgc |
118691 |
T |
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| Q |
307 |
tg--agtggtattggatggaaggatgcagtttgctgttctc |
345 |
Q |
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| T |
118690 |
tgctagtggtattggatggaaggatgcagtttgctgttctc |
118650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 207 - 346
Target Start/End: Original strand, 29788 - 29929
Alignment:
| Q |
207 |
aaggaattcttggtttattcaaattttagttaattgtttgtcactctagatatttacaaatttcataaagtggtaacatgttttttatgatgtgtgttgc |
306 |
Q |
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|||||||||||||||| ||| ||||| | || ||||||||||||||||||||| || | |||||||||||||||| |||||||||||||||||||||| |
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| T |
29788 |
aaggaattcttggtttcttccaatttcgggtatttgtttgtcactctagatattcacgcacttcataaagtggtaacctgttttttatgatgtgtgttgc |
29887 |
T |
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| Q |
307 |
tg--agtggtattggatggaaggatgcagtttgctgttctct |
346 |
Q |
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|| | |||||||||||||||||||||||||||||||||||| |
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| T |
29888 |
tgctattggtattggatggaaggatgcagtttgctgttctct |
29929 |
T |
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