View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18236_high_12 (Length: 340)
Name: NF18236_high_12
Description: NF18236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18236_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 28733346 - 28733103
Alignment:
| Q |
1 |
ttgagccggtttatctcctcgctttctacaacttccaatgcaggtaagcgaggagataaaccgactccactgaccaaatcatcctgaagtttgctcacaa |
100 |
Q |
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| T |
28733346 |
ttgagccggtttatctcctcgctttctacaacttccaatgcaggtaagcgaggagataaaccgactccactgaccaaatcatcctgaagtttgctcacaa |
28733247 |
T |
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| Q |
101 |
gttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttctaatcggagcgtttc |
200 |
Q |
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| T |
28733246 |
gttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttctaatcggagcgtttc |
28733147 |
T |
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| Q |
201 |
cactgtcttatttgcagcttccaattgcatttgagttgtaccaa |
244 |
Q |
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| T |
28733146 |
cactgtcttatttgcagcttccaattgcatttgagttgtaccaa |
28733103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 245 - 340
Target Start/End: Complemental strand, 28733442 - 28733347
Alignment:
| Q |
245 |
gtgctttggatatactcattctgatatcttacctcggcaccatccagtgcagattttaactgccctgcttcagctttaacggaaacaagctcggct |
340 |
Q |
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| T |
28733442 |
gtgctttggatatactcattctgatatcttacctcggcaccatccagtgcagattttagctgccctgcttcagctttaactgaaacaagctcggct |
28733347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 233
Target Start/End: Complemental strand, 22110127 - 22109981
Alignment:
| Q |
87 |
aagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttct |
186 |
Q |
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| T |
22110127 |
aagtttcctcacaagttcctccaaggactttgcttgagatcttgattgctccaactccaaagctaaggacttgtaagcttcagttgcttttagaccatct |
22110028 |
T |
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| Q |
187 |
aatcggagcgtttccactgtcttatttgcagcttccaattgcatttg |
233 |
Q |
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| T |
22110027 |
gatcggagtgtttccactgtcttatttaccgtttccaattgcatttg |
22109981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 87 - 233
Target Start/End: Original strand, 40584462 - 40584608
Alignment:
| Q |
87 |
aagtttgctcacaagttcctccagtgagcttacttgagaccttgatttctctaactctaaagctaaggattggtaatcttctgacgcttttgcaccttct |
186 |
Q |
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|||||| |||||||||||||||| || || ||||||| ||||||| ||| ||||| ||||||||||| | |||| |||| | |||||| ||| ||| |
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| T |
40584462 |
aagtttcctcacaagttcctccaaggactttgcttgagatcttgattgctccaactccaaagctaaggacttgtaagcttcagttgcttttagaccatct |
40584561 |
T |
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| Q |
187 |
aatcggagcgtttccactgtcttatttgcagcttccaattgcatttg |
233 |
Q |
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| T |
40584562 |
gatcggagtgtttccactgtcttatttaccgtttccaattgcatttg |
40584608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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