View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18236_high_2 (Length: 799)

Name: NF18236_high_2
Description: NF18236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18236_high_2
NF18236_high_2
[»] chr2 (1 HSPs)
chr2 (111-783)||(843755-844427)


Alignment Details
Target: chr2 (Bit Score: 653; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 653; E-Value: 0
Query Start/End: Original strand, 111 - 783
Target Start/End: Complemental strand, 844427 - 843755
Alignment:
Q  111 cgtataaaccaaattaagttgttgggaaaaaacaaatcccgtccaaaattgtcatttgctctcggatcaaaatgaccgttatgcaagtatttgtctaggt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  844427 cgtataaaccaaattaagttgttgggaaaaaacaaatcccgtccaaaattgtcatttgctctcggatcaaaatgaccgttatgcaagtatttgtctaggt 844328  T
Q  211 tatctaaagcgtttgtctgtaatttgcatacgcaatttaagaaaatcaaacagcctccttggcttcactgtgatatcatcaattctgtttcaaagttgca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  844327 tatctaaagcgtttgtctgtaatttgcatacgcaatttaagaaaatcaaacagcctccttggcttcactgtgatatcatcaattctgtttcaaagttgca 844228  T
Q  311 ttagatatgattttctcatggccacttaattttccatacactgagtccttggctattgctactatttactgtgaaatcgaactctgtcagtacaagtcga 410  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  844227 ttagatatgattttctcatggccacttaattttccttacactgagtccttggctattgctactatttactgtgaaatcgaactctgtcagtacaagtcga 844128  T
Q  411 gcatcctttatatagtgtaaaaccattgcaacatggaaggcgatacgggtgtggggactctccaccaagcattatattgacttaactatcagagtgtttg 510  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  844127 gcatcctttatatagtgtaaaaccattggaacatggaaggcgatacgggtgtggggactctccaccaagcattatattgacttaactatcagagtgtttg 844028  T
Q  511 cggttacacctccttcagagcatttcttccatatgagatactttatattttctaataaatttaagttctgattagaacaagtatcaacacacaaatatta 610  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  844027 cggttacacctccttaagagcatttcttccatatgagatactttatattttctaataaatttaagttctgattagaacaagtatcaatacacaaatatta 843928  T
Q  611 agttgtgtaaacaccatggtaaaatagataaattgattaaaataatgactggtcaaagacaaatatctggatttgaaacactgttgaatcgtagtagatt 710  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  843927 agttgtgtaaacgccatggtaaaatagataaattgattaaaataatgactggtcaaagacaaatatctggatttgaaacactgttgaatcgtagtagatt 843828  T
Q  711 gtaaaatgaaagaaataggagaaagaagtgtcgttgtagtttagtcctttattttcagattgtctgtcatttg 783  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  843827 gtaaaatgaaagaaataggagaaagaagtgtcgttgtagtttagtcctttattttcagattgtctgtcatttg 843755  T

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