View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18236_high_20 (Length: 237)

Name: NF18236_high_20
Description: NF18236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18236_high_20
NF18236_high_20
[»] chr5 (1 HSPs)
chr5 (16-221)||(18401102-18401308)
[»] chr6 (5 HSPs)
chr6 (158-222)||(9929327-9929391)
chr6 (158-210)||(989519-989571)
chr6 (149-197)||(20207202-20207250)
chr6 (149-197)||(22101225-22101273)
chr6 (166-221)||(30525837-30525893)
[»] chr8 (2 HSPs)
chr8 (158-198)||(26462367-26462407)
chr8 (161-197)||(39555893-39555929)
[»] chr4 (1 HSPs)
chr4 (156-197)||(2791453-2791494)
[»] chr3 (1 HSPs)
chr3 (160-221)||(51715045-51715106)
[»] chr2 (2 HSPs)
chr2 (149-210)||(5867927-5867987)
chr2 (159-199)||(43050146-43050186)
[»] chr1 (2 HSPs)
chr1 (138-221)||(48400927-48401008)
chr1 (159-219)||(51474027-51474086)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 18401102 - 18401308
Alignment:
Q  16 aatataatagtttctgtgaacgtatttctggttctcttattggctcttatattgctgttgctctctttataataataatcctcctatctcaatcagctat 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  18401102 aatacaatagtttctgtgaacgtatttctggttctcttattggctcttatattgccgttgctctctttataataataatcctcctatctcaatcagctat 18401201  T
Q  116 ctctcgaaactgatgatttgggctatgagtttatcgcgtgttctattcagattatagaatctgaaatgtttcaacgtgttttggtagat-tttatgaggt 214  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || | | ||||||||    
T  18401202 ctctcgaaactgatgatttggtctatgagtttatcgcgtgttctattcagattatagaatctgaaatgtttcaacgtgtttttggaggtctgtatgaggt 18401301  T
Q  215 gtttatg 221  Q
    |||||||    
T  18401302 gtttatg 18401308  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 9929327 - 9929391
Alignment:
Q  158 ctattcagattatagaatctgaaatgtttcaacgtgttttggtagattttatgaggtgtttatga 222  Q
    ||||| ||||| || |||||||||| ||||||||||||||||  | |||||||||||||||||||    
T  9929327 ctatttagattttaaaatctgaaatctttcaacgtgttttggaggtttttatgaggtgtttatga 9929391  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 989519 - 989571
Alignment:
Q  158 ctattcagattatagaatctgaaatgtttcaacgtgttttggtagattttatg 210  Q
    ||||||||| | || |||||||||| |||||||||||||| | ||||||||||    
T  989519 ctattcagaatctaaaatctgaaatatttcaacgtgtttttggagattttatg 989571  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 20207250 - 20207202
Alignment:
Q  149 tcgcgtgttctattcagattatagaatctgaaatgtttcaacgtgtttt 197  Q
    |||| ||| ||||||||||| || |||||||||| ||||||||||||||    
T  20207250 tcgcatgtcctattcagattctaaaatctgaaatatttcaacgtgtttt 20207202  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 22101273 - 22101225
Alignment:
Q  149 tcgcgtgttctattcagattatagaatctgaaatgtttcaacgtgtttt 197  Q
    |||| ||| ||||||||||| || |||||||||| ||||||||||||||    
T  22101273 tcgcatgtcctattcagattctaaaatctgaaatatttcaacgtgtttt 22101225  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 221
Target Start/End: Complemental strand, 30525893 - 30525837
Alignment:
Q  166 attatagaatctgaaatgtttcaacgtg-ttttggtagattttatgaggtgtttatg 221  Q
    ||||||||||| |||||||||||||||| ||||||  | ||||||||| ||||||||    
T  30525893 attatagaatccgaaatgtttcaacgtgtttttggaggtttttatgagatgtttatg 30525837  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 26462367 - 26462407
Alignment:
Q  158 ctattcagattatagaatctgaaatgtttcaacgtgttttg 198  Q
    ||||||| |||||| ||||||||||||||||||||||||||    
T  26462367 ctattcaaattataaaatctgaaatgtttcaacgtgttttg 26462407  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 197
Target Start/End: Original strand, 39555893 - 39555929
Alignment:
Q  161 ttcagattatagaatctgaaatgtttcaacgtgtttt 197  Q
    |||||||| || |||||||||||||||||||||||||    
T  39555893 ttcagattttaaaatctgaaatgtttcaacgtgtttt 39555929  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 2791453 - 2791494
Alignment:
Q  156 ttctattcagattatagaatctgaaatgtttcaacgtgtttt 197  Q
    |||||||||||||||| |||||||||| ||| ||||||||||    
T  2791453 ttctattcagattataaaatctgaaatattttaacgtgtttt 2791494  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 51715045 - 51715106
Alignment:
Q  160 attcagattatagaatctgaaatgtttcaacgtgttttggtagattttatgaggtgtttatg 221  Q
    |||| |||| || |||||||||||||| ||||||||||||  | ||||||| ||||||||||    
T  51715045 attcggattctaaaatctgaaatgttttaacgtgttttggaggtttttatggggtgtttatg 51715106  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 5867927 - 5867987
Alignment:
Q  149 tcgcgtgttctattcagattatagaatctgaaatgtttcaacgtgttttggtagattttatg 210  Q
    ||||||| ||||||| |||| || |||||||||| |||||||||||||| | ||||||||||    
T  5867927 tcgcgtgctctattc-gattttaaaatctgaaatatttcaacgtgtttttggagattttatg 5867987  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 43050146 - 43050186
Alignment:
Q  159 tattcagattatagaatctgaaatgtttcaacgtgttttgg 199  Q
    ||||| |||| || |||||||||||||||||||||||||||    
T  43050146 tattcggattttaaaatctgaaatgtttcaacgtgttttgg 43050186  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 221
Target Start/End: Original strand, 48400927 - 48401008
Alignment:
Q  138 ctatgagtttatcgcgtgttctattcagattatagaatctgaaatgtttcaacgtgttttggtagattttatgaggtgtttatg 221  Q
    ||||||||||||||  ||| |||||| |||| || |||| ||||||||| ||||||||||||  | ||||||  ||||||||||    
T  48400927 ctatgagtttatcg--tgtcctattcggattctaaaatccgaaatgttttaacgtgttttggaggtttttatagggtgtttatg 48401008  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 51474086 - 51474027
Alignment:
Q  159 tattcagattatagaatctgaaatgtttcaacgtgttttggtagattttatgaggtgttta 219  Q
    |||||| |||||| |||||||||||||| ||||| ||||||| | ||||||| ||||||||    
T  51474086 tattcaaattataaaatctgaaatgttttaacgtcttttggtcg-ttttatggggtgttta 51474027  T

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