View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18236_high_22 (Length: 226)
Name: NF18236_high_22
Description: NF18236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18236_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 36314182 - 36314297
Alignment:
| Q |
7 |
ggaagtcacccgtaacaccaccaacttgcggatgaaagtgttaacaatagtaaaagagaggatagttaaagaagaaaacggcggctagggttccaaacaa |
106 |
Q |
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| T |
36314182 |
ggaagtcacgcgtaacaccaccaacttgcggacgaaagtgttaacaatagtaaaagagaggatagttaaagaagaaaacggcggctagggttccaaacaa |
36314281 |
T |
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| Q |
107 |
attatgaaatatttta |
122 |
Q |
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| T |
36314282 |
attatgaaatatttta |
36314297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 36314696 - 36314806
Alignment:
| Q |
114 |
aatattttaataggggacgttcatcggatcgagtggtcccttcaatccgatcacccaacccaattcaat-tgcactttacaaatccaacccgaaccaacc |
212 |
Q |
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| T |
36314696 |
aatattttaataggggacgttcatcggatcgagtggtcccttcaatccgatcacccaacccaattcaatctgcactttacaaatccaacccgaaccaaca |
36314795 |
T |
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| Q |
213 |
cattcgattcc |
223 |
Q |
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| T |
36314796 |
cattcgattcc |
36314806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 36337002 - 36337082
Alignment:
| Q |
37 |
gatgaaagtgt-taacaatagtaaaagagaggatagttaaagaagaaaacggcggctagggttccaaacaaattatgaaat |
116 |
Q |
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| T |
36337002 |
gatgaaagtgtctgacaatagaaaaagagttaatagtgaaaggagaagacgacggctagggttccaaacaagttatgaaat |
36337082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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