View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18236_high_24 (Length: 202)
Name: NF18236_high_24
Description: NF18236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18236_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 1e-64; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 47745631 - 47745466
Alignment:
| Q |
19 |
gaaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttagagcgtgctatttcagaaattccaagnnnnnnna |
118 |
Q |
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| T |
47745631 |
gaaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttagagcgtgctatttcagaaactccaagtttttttt |
47745532 |
T |
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| Q |
119 |
ataagaagattggtgctagagttctcaaacgaagttgtaatattagatatgaaatatattccttct |
184 |
Q |
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| T |
47745531 |
ataacaagattggtggtagagttctcaaactaagttgtaatattagatatgaaatatattccttct |
47745466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 47713038 - 47712887
Alignment:
| Q |
20 |
aaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttagagcgtgctatttcagaaattccaagnnnnnnnaa |
119 |
Q |
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| T |
47713038 |
aaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgtta |
47712939 |
T |
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| Q |
120 |
taagaagattggtgctagagttctcaaacgaagttgtaatattagatatgaa |
171 |
Q |
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| T |
47712938 |
taacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaa |
47712887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 47717842 - 47717677
Alignment:
| Q |
19 |
gaaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttagagcgtgctatttcagaaattccaagnnnnnnna |
118 |
Q |
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| T |
47717842 |
gaaaccacatatggtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttatttta |
47717743 |
T |
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| Q |
119 |
ataagaagattggtgctagagttctcaaacgaagttgtaatattagatatgaaatatattccttct |
184 |
Q |
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|||| ||| |||| | || ||||||||||| |||||| ||||||||| ||||||| |||||||||| |
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| T |
47717742 |
ataacaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaaatctattccttct |
47717677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 47759953 - 47759801
Alignment:
| Q |
20 |
aaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttagagcgtgctatttcagaaattccaagnnnnnnnaa |
119 |
Q |
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||||||||||||||||||| ||||| |||||||| ||||||| |||||||||||| |||||||||| ||||||| ||||| |||||||| || |
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| T |
47759953 |
aaaccatatatggtcttgttcagtgcacacctgatttgtcagagcaagattgcaataattgtttagatggtgctatctcagatattccaagttgttgtaa |
47759854 |
T |
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| Q |
120 |
taagaagattggtgctagagttctcaaacgaagttgtaatattagatatgaaa |
172 |
Q |
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||| |||||||||| |||||||||||||| |||||||||||| |||||||||| |
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| T |
47759853 |
taacaagattggtggtagagttctcaaaccaagttgtaatatcagatatgaaa |
47759801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 47782237 - 47782277
Alignment:
| Q |
19 |
gaaaccatatatggtcttgtgcagtgtacacctgacttgtc |
59 |
Q |
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| T |
47782237 |
gaaacaatatatggtcttgttcagtgtacacctgacttgtc |
47782277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 47704942 - 47704888
Alignment:
| Q |
118 |
aataagaagattggtgctagagttctcaaacgaagttgtaatattagatatgaaa |
172 |
Q |
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| T |
47704942 |
aataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaaa |
47704888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 28830976 - 28830930
Alignment:
| Q |
126 |
gattggtgctagagttctcaaacgaagttgtaatattagatatgaaa |
172 |
Q |
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|||||||||||||||| | |||| ||||||||||||||||||||||| |
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| T |
28830976 |
gattggtgctagagttatgaaaccaagttgtaatattagatatgaaa |
28830930 |
T |
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