View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18236_low_10 (Length: 459)
Name: NF18236_low_10
Description: NF18236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18236_low_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 34 - 442
Target Start/End: Complemental strand, 4673275 - 4672870
Alignment:
| Q |
34 |
cacttcttcacacttgatgtatgtgttatcgtgtttcttccactatactattccttatgaaaagagtaaagaagaggaccagggtacaaccaagcaaaag |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4673275 |
cacttcttcacacttgatgtatgtgttatcgtgttttctccactatactattccttatgaaaagagtaaagaagaggaccaggatacaaccaagcaaaag |
4673176 |
T |
|
| Q |
134 |
tggtgaaatggattgagagaaaaggaagcaaacttgtaaacaaacatttttgaaaaagacacacaatttggaagctgcatgcgtccctgcgccgtcaacc |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4673175 |
tggtgaaatggattgagagaaaaggaagcaaacttgtaaacaaacatttgtgaaaaagacaca--atttggaagctgcatgcgtccctgcgccgtcaacc |
4673078 |
T |
|
| Q |
234 |
ttcacatcctatgaaatattggaagctcattaattaaattaaatcatatgattttgaagtcaatctagtgaaattatagtaacggtttatccggattggt |
333 |
Q |
| |
|
|||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4673077 |
ttcacatcctatgaaatattagaacctcaataattaaattaaatcatatgattttgaagtcaatctagtgaaaatatagtaacggtttatccggattggt |
4672978 |
T |
|
| Q |
334 |
tgattaattgacttttgtttttgctaataagtggattaattaactttttatttgttttcattgcatggttttctcttttgaatgacaagttgacaacaat |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4672977 |
tgattaattgacttttgtttttgctaataagtggattaattaacttttt-tttgttttcattgcatggtcttctcttttgaatgacaagttgacaacaat |
4672879 |
T |
|
| Q |
434 |
tggtctagt |
442 |
Q |
| |
|
||||||||| |
|
|
| T |
4672878 |
tggtctagt |
4672870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University