View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18236_low_12 (Length: 435)
Name: NF18236_low_12
Description: NF18236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18236_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 117 - 419
Target Start/End: Original strand, 33269297 - 33269603
Alignment:
| Q |
117 |
atggttgatcaagcacagaaa----gttaatctctatctgcttgcattgcagtgatacctcacctggcgtagcacacgatgctttcaacaccttcttcag |
212 |
Q |
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| T |
33269297 |
atggttgattaagcacagaaatgttgttaatctatatctacttgcattgcagtgataccacacctggcgtagcacacgatgctttcaacaccttcttcag |
33269396 |
T |
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| Q |
213 |
tgagactggatcgggcaagcatgtaccaagggccttatttgttgatctggaacccactgtaatcgatgaagtaagaactggttcgtacagacaacttttt |
312 |
Q |
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| T |
33269397 |
tgagaccggatctggcaagcatgtaccaagggccttatttgttgatctggaacctactgttatcgatgaagtaagaactggttcttacagacaacttttt |
33269496 |
T |
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| Q |
313 |
caccctgagcaattaatttctggcaaggaagatgccgctaataattttgcaaggggacactacaccggtaaggcaatttctaatgcagttcaaattagct |
412 |
Q |
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| T |
33269497 |
caccctgagcaattaatttctggcaaggaagatgccgctaataattttgcaaggggacactacaccggtaaggcaatttctaatacagttcaaattagct |
33269596 |
T |
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| Q |
413 |
attttct |
419 |
Q |
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| T |
33269597 |
attttct |
33269603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33269261 - 33269298
Alignment:
| Q |
1 |
tatgttgcttttcttgatgtttggattttttaactcat |
38 |
Q |
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| T |
33269261 |
tatgttgcttttcttgatgtttggactttttaactcat |
33269298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 233 - 377
Target Start/End: Complemental strand, 10033550 - 10033406
Alignment:
| Q |
233 |
atgtaccaagggccttatttgttgatctggaacccactgtaatcgatgaagtaagaactggttcgtacagacaactttttcaccctgagcaattaatttc |
332 |
Q |
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| T |
10033550 |
atgttccaagggctctatttgttgatctagagcctactgtaattgatgaaattagatctggtccttatagacaactttttcatccagaacagttaattac |
10033451 |
T |
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| Q |
333 |
tggcaaggaagatgccgctaataattttgcaaggggacactacac |
377 |
Q |
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| T |
10033450 |
tggcaaagaagatgctgctaataattttgcaagaggacattacac |
10033406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 377
Target Start/End: Complemental strand, 35670537 - 35670341
Alignment:
| Q |
181 |
gtagcacacgatgctttcaacaccttcttcagtgagactggatcgggcaagcatgtaccaagggccttatttgttgatctggaacccactgtaatcgatg |
280 |
Q |
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| T |
35670537 |
gtagcacacgatgcattcaacacattcttcagcgaaactggttccggcaaacacgttcctcgcgccgtcttcgtagatcttgaacccaccgtcatcgatg |
35670438 |
T |
|
| Q |
281 |
aagtaagaactggttcgtacagacaactttttcaccctgagcaattaatttctggcaaggaagatgccgctaataattttgcaaggggacactacac |
377 |
Q |
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| T |
35670437 |
aagttcgttccggtacctaccgacaactcttccaccctgaacaactcatctccggcaaagaagacgccgctaacaattttgctagaggacactacac |
35670341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 323
Target Start/End: Complemental strand, 40378426 - 40378291
Alignment:
| Q |
188 |
acgatgctttcaacaccttcttcagtgagactggatcgggcaagcatgtaccaagggccttatttgttgatctggaacccactgtaatcgatgaagtaag |
287 |
Q |
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|||||||||||||||||||||||||||| |||||| | || |||||||| || | || | ||||| ||||| || |||||||| || |||||||| || |
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| T |
40378426 |
acgatgctttcaacaccttcttcagtgaaactggagctggaaagcatgtgcctcgtgcagtttttgtagatctcgagcccactgtgattgatgaagtgag |
40378327 |
T |
|
| Q |
288 |
aactggttcgtacagacaactttttcaccctgagca |
323 |
Q |
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||||| | ||| | ||||| ||||| |||||||| |
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| T |
40378326 |
gactgggacataccgccaactatttcatcctgagca |
40378291 |
T |
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