View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18236_low_17 (Length: 331)
Name: NF18236_low_17
Description: NF18236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18236_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 323
Target Start/End: Complemental strand, 47745631 - 47745327
Alignment:
| Q |
19 |
gaaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttagagcgtgctatttcagaaattccaagnnnnnnna |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47745631 |
gaaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttagagcgtgctatttcagaaactccaagtttttttt |
47745532 |
T |
|
| Q |
119 |
ataagaagattggtgctagagttctcaaacgaagttgtaatattagatatgaaatatattccttctatggtcctacgacagtaatagaccaagatgaaac |
218 |
Q |
| |
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|||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47745531 |
ataacaagattggtggtagagttctcaaactaagttgtaatattagatatgaaatatattccttctatggtcctacgacagtaatagaccaagatgaaac |
47745432 |
T |
|
| Q |
219 |
ctccccaccagaagaaggtaataattactaattgtcattacctaatcatacttaattactacatggtgattacagttaggttaccttgttttacttgttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47745431 |
ctccccaccagaagaaggtaataattactaattgtcattacctaatcatacttaattactacatggtgattacagttaggttaccttgttttacttgttc |
47745332 |
T |
|
| Q |
319 |
atatc |
323 |
Q |
| |
|
|||| |
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|
| T |
47745331 |
ttatc |
47745327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 47713038 - 47712743
Alignment:
| Q |
20 |
aaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttagagcgtgctatttcagaaattccaagnnnnnnnaa |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||| ||||||||||||| | |
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| T |
47713038 |
aaaccatatatggtcttgtgcagtgtacacctgatttgtcagagcaagattgcaatgattgtttagagtttgctatatcagaaattccaatttactgtta |
47712939 |
T |
|
| Q |
120 |
taagaagattggtgctagagttctcaaacgaagttgtaatattagatatgaaatatattccttctatggtcctacgacagtaatagaccaagatgaaacc |
219 |
Q |
| |
|
||| ||||||||| ||||||| |||||| |||||||||||||||||||||| | ||| ||||| || |||||| ||||||||| ||||||||||| | |
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| T |
47712938 |
taacaagattggttgtagagttgtcaaaccaagttgtaatattagatatgaagtctatcgcttctctgatcctacaacagtaataaaccaagatgaacac |
47712839 |
T |
|
| Q |
220 |
tccccaccagaagaaggtaataattactaattgtcatt-acctaatcatacttaattactacatggtgattacagttaggttaccttgttttacttgttc |
318 |
Q |
| |
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|||||| |||||||||| |||||||| ||||||||| || ||||||||||| ||| ||||| |||||||| | |||||||| ||||||||||||||| |
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| T |
47712838 |
tccccatcagaagaagg---taattactgattgtcattaacttaatcatactt-attgctacaaggtgattaaatttaggttattttgttttacttgttc |
47712743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 47717842 - 47717597
Alignment:
| Q |
19 |
gaaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttagagcgtgctatttcagaaattccaagnnnnnnna |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| | | |
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|
| T |
47717842 |
gaaaccacatatggtcttgtgcagtgtacacctgatttatcacagcaagattgcaatgattgtttagagcgtgctatttcagaaattcctatttatttta |
47717743 |
T |
|
| Q |
119 |
ataagaagattggtgctagagttctcaaacgaagttgtaatattagatatgaaatatattccttctatggtcctacgacagtaatagaccaagatgaaac |
218 |
Q |
| |
|
|||| ||| |||| | || ||||||||||| |||||| ||||||||| ||||||| ||||||||||||| |||||| | |||||||||| || |||||| |
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|
| T |
47717742 |
ataacaaggttggcggtatagttctcaaaccaagttgcaatattagacatgaaatctattccttctatgatcctacacctgtaatagacccaggtgaaac |
47717643 |
T |
|
| Q |
219 |
ctccccaccagaagaaggtaataattactaattgtcattacctaatcat |
267 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| ||| ||||||| |
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|
| T |
47717642 |
ctccccatcagaagaagg---taattactaattgtcgttaattaatcat |
47717597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 47759953 - 47759709
Alignment:
| Q |
20 |
aaaccatatatggtcttgtgcagtgtacacctgacttgtcaggacaagattgcaatgattgtttagagcgtgctatttcagaaattccaagnnnnnnnaa |
119 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||| ||||||| |||||||||||| |||||||||| ||||||| ||||| |||||||| || |
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|
| T |
47759953 |
aaaccatatatggtcttgttcagtgcacacctgatttgtcagagcaagattgcaataattgtttagatggtgctatctcagatattccaagttgttgtaa |
47759854 |
T |
|
| Q |
120 |
taagaagattggtgctagagttctcaaacgaagttgtaatattagatatgaaatatattccttctatggtcctacgacagtaatagaccaagatgaaacc |
219 |
Q |
| |
|
||| |||||||||| |||||||||||||| |||||||||||| |||||||||| | | |||||||| |||||| | | |||||||| || ||||||| |
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|
| T |
47759853 |
taacaagattggtggtagagttctcaaaccaagttgtaatatcagatatgaaacctctagcttctatgatcctacacctgcaatagacccaggtgaaacc |
47759754 |
T |
|
| Q |
220 |
tccccaccagaagaaggtaataattactaattgtcattacctaatcat |
267 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||| ||||||| |
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|
| T |
47759753 |
tccccatcagaagaagg---taattactaattgtcattaattaatcat |
47759709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 47704942 - 47704828
Alignment:
| Q |
118 |
aataagaagattggtgctagagttctcaaacgaagttgtaatattagatatgaaatatattccttctatggtcctacgacagtaatagaccaagatgaaa |
217 |
Q |
| |
|
||||| |||||||||| |||||| |||||| |||||| |||||||||||||||| || |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
47704942 |
aataacaagattggtggaagagttatcaaaccaagttgcaatattagatatgaaaccaatcccttctatggtcctacgacagtaatagacccagatgaaa |
47704843 |
T |
|
| Q |
218 |
cctccccaccagaag |
232 |
Q |
| |
|
|||||||| |||||| |
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|
| T |
47704842 |
cctccccatcagaag |
47704828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 47782237 - 47782277
Alignment:
| Q |
19 |
gaaaccatatatggtcttgtgcagtgtacacctgacttgtc |
59 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
47782237 |
gaaacaatatatggtcttgttcagtgtacacctgacttgtc |
47782277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 28830976 - 28830930
Alignment:
| Q |
126 |
gattggtgctagagttctcaaacgaagttgtaatattagatatgaaa |
172 |
Q |
| |
|
|||||||||||||||| | |||| ||||||||||||||||||||||| |
|
|
| T |
28830976 |
gattggtgctagagttatgaaaccaagttgtaatattagatatgaaa |
28830930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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