View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18236_low_19 (Length: 296)
Name: NF18236_low_19
Description: NF18236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18236_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 108 - 291
Target Start/End: Original strand, 7876544 - 7876729
Alignment:
| Q |
108 |
gtgttgcatgttaaaagtaaaagtctaagcttggttgagatgtaaaccctatttcttccttnnnnnnnnnnnnnnn--gtaaaccctatttcttggtgt- |
204 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7876544 |
gtgttgcatgttaaaagtaaaagtcta-gcttggttgagatgtaaaccctatttcttccttaaaaaaaaaaaaaaaaagtaaaccctatttcttggtgtg |
7876642 |
T |
|
| Q |
205 |
acttatatatatttccatcgctagagtatatgccttgaatgaaacaaataatcacactctcacgctccagtatatattcttctctct |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7876643 |
acttatatatatttccatcgctagagtatatgccttgaatgaaacaaataatcacactctcacgctccagtatatattcttctctct |
7876729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University