View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18236_low_27 (Length: 234)
Name: NF18236_low_27
Description: NF18236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18236_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7911709 - 7911930
Alignment:
| Q |
1 |
cgaaggagagagtttgtggcataaacctctgaaccaaaaccccttttgataatttgagcatggatttgatgtgtttcttctaatgctgagagtgcagaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7911709 |
cgaaggagagagtttgtggcataaacctctgaaccaaaaccccttttgataatttgaacatggatttgatgtgtttctgctaatgctgagagtgcagaac |
7911808 |
T |
|
| Q |
101 |
atgctttgagaaggaaagggaaagtataagcattgtgaggtattgaatgatgaagcaattgatgatacaaaagcaatgcttcttctgggtcattactgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7911809 |
atgctttgagaaggaaagggaaagtataagcattgtgaggtattgaatgatgaagcatttgatgatacaaaagcaatgcttcttctgggtcattactgtt |
7911908 |
T |
|
| Q |
201 |
tgaatatgccctgatcatggtg |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
7911909 |
tgaatatgccctgatcatggtg |
7911930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University