View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18236_low_29 (Length: 211)
Name: NF18236_low_29
Description: NF18236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18236_low_29 |
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| [»] scaffold0179 (1 HSPs) |
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| [»] scaffold0177 (1 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: scaffold0179 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 1489 - 1694
Alignment:
| Q |
1 |
gaaggatgcagtttgctgttctctagtgctactctttgtgttgatagtgtatgtattttggtgttcatgaatcttgctagtcttggagtaccatagctta |
100 |
Q |
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| T |
1489 |
gaaggatgcagtttgctgttctctagtgctactcttggtgttgatagtgtatgtggtttggtgttcatgaatcttgctagtcttggagtaccatagctta |
1588 |
T |
|
| Q |
101 |
gtgttagagtaattatgtttttcttttctttactatcacaattaaggataatgtatctttaattttggttttgcttactttctagtttagattaggtggc |
200 |
Q |
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| T |
1589 |
gtgttggaataattatg-ttttcttttctttactatcacagttaaggataatgtatctttaattttggttttgattactttctagtttagattaggtggc |
1687 |
T |
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| Q |
201 |
gtaaggc |
207 |
Q |
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||||||| |
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| T |
1688 |
gtaaggc |
1694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 29906 - 30110
Alignment:
| Q |
1 |
gaaggatgcagtttgctgttctctagtgctactctttgtgttgatagtgtatgtattttggtgttcatgaatcttgctagtcttggagtaccatagctta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
29906 |
gaaggatgcagtttgctgttctctagtgctactcttggtattgatagtgtatgtactttggtgttcatgattcttgctagtctaggagtaccatagctta |
30005 |
T |
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| Q |
101 |
gtgttagagtaattatgtttttcttttctttactatcacaattaaggataatgtatctttaattttggttttgcttactttctagtttagattaggtggc |
200 |
Q |
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| T |
30006 |
gtattggagtaattatg-ttttcttttctttactatcatagttaaggataatgtccctttaattttggtttttcttactttctagtttagattaggtggc |
30104 |
T |
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| Q |
201 |
gtaagg |
206 |
Q |
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||||| |
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| T |
30105 |
ttaagg |
30110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 118672 - 118515
Alignment:
| Q |
1 |
gaaggatgcagtttgctgttctctagtgctactctttgtgttgatagtgtatgtattttggtgttcatgaatcttgctagtcttggagtaccatagctta |
100 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||| || ||| ||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
118672 |
gaaggatgcagtttgctgttctccagtgctactcttagtgttgatagtatacgtagtttggtgttcatgaatcttgctagtctaggagtaccattgctta |
118573 |
T |
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| Q |
101 |
gtgttagagtaattatgtttttcttttctttactatcacaattaaggataatgtatct |
158 |
Q |
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|||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||| |
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| T |
118572 |
gtgttagagtaattatgtttttcttttcgttactatcatagttaaggataatgtatct |
118515 |
T |
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