View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18236_low_3 (Length: 763)

Name: NF18236_low_3
Description: NF18236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18236_low_3
NF18236_low_3
[»] chr8 (14 HSPs)
chr8 (1-304)||(11611432-11611739)
chr8 (477-632)||(11611905-11612061)
chr8 (34-175)||(7642604-7642744)
chr8 (28-218)||(13018450-13018639)
chr8 (34-208)||(12763236-12763405)
chr8 (63-182)||(38573289-38573407)
chr8 (28-178)||(12978247-12978396)
chr8 (35-140)||(44395688-44395792)
chr8 (24-111)||(33015550-33015636)
chr8 (398-444)||(11611833-11611879)
chr8 (28-93)||(36642666-36642731)
chr8 (123-218)||(24999449-24999544)
chr8 (158-208)||(44395633-44395683)
chr8 (33-95)||(45079293-45079355)
[»] chr7 (15 HSPs)
chr7 (21-182)||(48488378-48488538)
chr7 (37-181)||(40198933-40199077)
chr7 (61-208)||(28514610-28514756)
chr7 (35-208)||(31191345-31191516)
chr7 (35-213)||(45618421-45618597)
chr7 (25-182)||(23247692-23247847)
chr7 (33-213)||(10624913-10625092)
chr7 (35-185)||(19086300-19086447)
chr7 (25-174)||(37869682-37869830)
chr7 (37-185)||(25119917-25120064)
chr7 (63-192)||(28646616-28646744)
chr7 (37-208)||(45662210-45662378)
chr7 (35-138)||(5081735-5081837)
chr7 (105-180)||(8584116-8584191)
chr7 (96-182)||(1111732-1111818)
[»] chr2 (13 HSPs)
chr2 (34-208)||(223863-224036)
chr2 (33-182)||(36903960-36904108)
chr2 (32-164)||(9047570-9047701)
chr2 (37-214)||(38402503-38402679)
chr2 (28-208)||(39791504-39791683)
chr2 (63-207)||(6563052-6563193)
chr2 (37-208)||(19955050-19955220)
chr2 (66-189)||(41283329-41283450)
chr2 (37-182)||(3002345-3002484)
chr2 (63-181)||(4428778-4428895)
chr2 (36-93)||(1758433-1758490)
chr2 (128-201)||(9559629-9559702)
chr2 (61-182)||(15335832-15335952)
[»] chr4 (18 HSPs)
chr4 (35-182)||(37624825-37624971)
chr4 (34-182)||(35808688-35808835)
chr4 (28-216)||(9093547-9093734)
chr4 (56-182)||(3121056-3121180)
chr4 (35-178)||(16958335-16958477)
chr4 (32-182)||(41621910-41622059)
chr4 (35-208)||(52270436-52270608)
chr4 (35-207)||(31861526-31861695)
chr4 (34-182)||(25231478-25231625)
chr4 (36-171)||(43594987-43595121)
chr4 (35-182)||(26876052-26876198)
chr4 (56-183)||(41735423-41735549)
chr4 (35-201)||(46737411-46737577)
chr4 (35-181)||(8680477-8680621)
chr4 (32-207)||(24504648-24504822)
chr4 (67-183)||(43142051-43142163)
chr4 (77-182)||(2168451-2168555)
chr4 (35-93)||(43432431-43432488)
[»] chr3 (9 HSPs)
chr3 (36-182)||(8108210-8108354)
chr3 (35-213)||(45249333-45249510)
chr3 (24-191)||(53466191-53466357)
chr3 (33-181)||(23919141-23919288)
chr3 (34-189)||(39611620-39611772)
chr3 (132-208)||(31580363-31580439)
chr3 (56-203)||(6488766-6488912)
chr3 (35-182)||(48993361-48993506)
chr3 (33-113)||(33865307-33865386)
[»] chr5 (9 HSPs)
chr5 (37-182)||(34338903-34339047)
chr5 (32-182)||(15476885-15477034)
chr5 (33-140)||(10284952-10285058)
chr5 (35-201)||(32292188-32292356)
chr5 (104-182)||(14662978-14663056)
chr5 (36-90)||(1088186-1088239)
chr5 (35-93)||(20920978-20921035)
chr5 (48-93)||(26362234-26362279)
chr5 (62-183)||(29045332-29045452)
[»] chr1 (14 HSPs)
chr1 (19-182)||(36563851-36564010)
chr1 (32-182)||(42410166-42410315)
chr1 (37-182)||(894777-894921)
chr1 (63-195)||(13984245-13984376)
chr1 (32-148)||(10040435-10040548)
chr1 (36-180)||(38067686-38067829)
chr1 (32-201)||(3831352-3831519)
chr1 (35-167)||(37296983-37297114)
chr1 (60-185)||(34038796-34038917)
chr1 (68-182)||(14104303-14104416)
chr1 (37-93)||(51049906-51049962)
chr1 (30-93)||(13208089-13208152)
chr1 (28-93)||(3527653-3527718)
chr1 (56-93)||(36384854-36384891)
[»] chr6 (3 HSPs)
chr6 (37-214)||(33134163-33134340)
chr6 (41-221)||(6100643-6100822)
chr6 (37-181)||(32147844-32147987)
[»] scaffold0002 (1 HSPs)
scaffold0002 (33-208)||(433847-434019)
[»] scaffold0020 (1 HSPs)
scaffold0020 (33-93)||(171560-171620)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 5e-98; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 11611432 - 11611739
Alignment:
Q  1 cattattatataaaaatgataacaataaaaataaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattg 100  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| ||||||  |||||||| ||||||||||||||||||||||||||||||||||||    
T  11611432 cattattatataaaaatgatagtaataaaaataaggaaaatgttaacaagtgttttaagagcaatgtttaagcatataaaagtagcaactttttgcattg 11611531  T
Q  101 agaattgtacggtaataactccaacaagtgtttgactta-ttttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgt 199  Q
    |||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||  | ||| ||||| |||    
T  11611532 agaattatacggtaataacttcaacaagtgtttaacttatttttttcaaagcataatatctttttatgggttccttaaacaatgtccttaggacacttgt 11611631  T
Q  200 taataagacactaaaaataatttatctcggaacacaaatttatatnnnnnnnnctttacaaaccaaaatcaaacttttcattatt---gagagtgtttgc 296  Q
    ||| |||||  |||||||||||||||||  |||| ||||||||||        ||||||||||||||||||||||||||||||||   ||||||||||||    
T  11611632 taacaagaccttaaaaataatttatctcaaaacataaatttatataaaaaaaactttacaaaccaaaatcaaacttttcattattgaggagagtgtttgc 11611731  T
Q  297 atggtatc 304  Q
    ||||||||    
T  11611732 atggtatc 11611739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 477 - 632
Target Start/End: Original strand, 11611905 - 11612061
Alignment:
Q  477 tattcaaactaaacaaggaccctcatccctagatnnnnnnnnn-ttatgcaatcttgataatgacttatgcaactgacacacacacatattaagaaagag 575  Q
    ||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11611905 tattcaaactaaacaaggaccctcatccctagataaaaaaaaaattatgcaatcttgataatgacttatgcaactgacacacacacatattaagaaagag 11612004  T
Q  576 nnnnnnncagacactcacaacaaacatagcatagcaaaacactattcaacattcatg 632  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11612005 aaaaaaacagacactcacaacaaacatagcatagcaaaacactattcaacattcatg 11612061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 34 - 175
Target Start/End: Complemental strand, 7642744 - 7642604
Alignment:
Q  34 aggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgttt 133  Q
    ||||||||||||| || ||| |||||| |||||||||| ||| ||||| ||||||||||| ||||||  ||||||||||| |||||| ||||||||||||    
T  7642744 aggaaaatgttaacaaatgttctaagaacattgtttaaacatctaaaattagcaactttt-gcattgtaaattgtacggttataacttcaacaagtgttt 7642646  T
Q  134 gacttattttttcaaagcataatatctttttatgggttcctt 175  Q
    ||||||| |||||||| |||||| ||||||||| ||||||||    
T  7642645 gacttatattttcaaaacataatttctttttataggttcctt 7642604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 28 - 218
Target Start/End: Complemental strand, 13018639 - 13018450
Alignment:
Q  28 aaaataaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaa 127  Q
    |||||| |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||||||  |||||||||   || |||  |||||    
T  13018639 aaaatatggaaaatgttaacaagtgccctaagggcattgtttaagcatataaaagtagcaac-ttttgcattggaaattgtacgaatatgactttaacaa 13018541  T
Q  128 gtgtttgacttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagacactaaaaata 218  Q
     |||||||||||| |||||||   ||| | |  |||||||||||||||||||||| || ||| ||||| |||||| ||||| || ||||||    
T  13018540 atgtttgacttatattttcaagatatatttttcttttatgggttccttaaacaatgcccttaggacacttgttaacaagacccttaaaata 13018450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 12763236 - 12763405
Alignment:
Q  34 aggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgttt 133  Q
    ||||||||||||| || || |||||| ||||||||||||||| ||||| |||||| ||||||||||     |||||| || |||||| |||||| | |||    
T  12763236 aggaaaatgttaacaaatgccctaagggcattgtttaagcatttaaaattagcaa-tttttgcattt----ttgtactgttataacttcaacaaatattt 12763330  T
Q  134 gacttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagac 208  Q
    ||||||| ||||||||||||| | ||||||||||||||||||||||||| |||||| ||||  |||||| |||||    
T  12763331 gacttatattttcaaagcatactttctttttatgggttccttaaacaatgcctttaggacatttgttaacaagac 12763405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 63 - 182
Target Start/End: Complemental strand, 38573407 - 38573289
Alignment:
Q  63 attgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgacttattttttcaaagcataatatcttt 162  Q
    |||||||||| || ||||||||| ||||||| ||||||  ||||||||||| |||||| |||||| |||||||||||| ||||||| ||||||| |||||    
T  38573407 attgtttaagtatctaaaagtagtaactttt-gcattggaaattgtacggttataacttcaacaaatgtttgacttatattttcaaggcataatttcttt 38573309  T
Q  163 ttatgggttccttaaacaat 182  Q
    ||||||||||||||||||||    
T  38573308 ttatgggttccttaaacaat 38573289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 12978396 - 12978247
Alignment:
Q  28 aaaataaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaa 127  Q
    |||| ||| |||||||||| ||||| |||||| |||||||||||| ||||||||||||||| ||||||| |||  |||||||||||  | |||  |||||    
T  12978396 aaaacaagaaaaatgttaacaagtgccctaagggcattgtttaagaatataaaagtagcaa-tttttgccttggaaattgtacggtcgtgactttaacaa 12978298  T
Q  128 gtgtttgacttattttttcaaagcataatatctttttatgggttccttaaa 178  Q
    |||||||| || | |||||||  |||||| |||||||||| ||| ||||||    
T  12978297 gtgtttgatttgtattttcaagacataatttctttttatgagtttcttaaa 12978247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 44395792 - 44395688
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttg 134  Q
    |||||||||||| ||||||| | || ||||||||||| ||| ||||||||||||| |||| |||||  ||||||||| | |||||| |||||||||||||    
T  44395792 ggaaaatgttaacaagtgtcatgagggcattgtttaaacatttaaaagtagcaac-ttttacattggaaattgtacgtttataacttcaacaagtgtttg 44395694  T
Q  135 acttat 140  Q
    ||||||    
T  44395693 acttat 44395688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 33015550 - 33015636
Alignment:
Q  24 aataaaaataaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacg 111  Q
    |||||||| |||||||||||||| ||||| | |||| ||||||||||||||| ||||||||||||| ||||||||||| | |||||||    
T  33015550 aataaaaagaaggaaaatgttaacaagtgccttaagggcattgtttaagcatctaaaagtagcaac-ttttgcattgaaagttgtacg 33015636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 398 - 444
Target Start/End: Original strand, 11611833 - 11611879
Alignment:
Q  398 tgccagtgagtaaagcatatagctaaactctatcctacagcatcttt 444  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  11611833 tgccagtgagtaaagcatatagctaaactctatcctacagcatcttt 11611879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 36642666 - 36642731
Alignment:
Q  28 aaaataaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttt 93  Q
    |||||||| |||||||||| ||||||| |||  ||||||||||||||| |||||||| ||||||||    
T  36642666 aaaataagaaaaatgttaacaagtgtcataaaggcattgtttaagcatctaaaagtaacaactttt 36642731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 123 - 218
Target Start/End: Original strand, 24999449 - 24999544
Alignment:
Q  123 aacaagtgtttgacttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagacactaaaaata 218  Q
    |||||||||||||||| | |||||||  |||||| ||||||| |||||||||| |||||| || ||| | ||| |||||| ||||| | |||||||    
T  24999449 aacaagtgtttgacttgtattttcaagacataatttctttttgtgggttcctttaacaatgcccttagggcacttgttaacaagacccaaaaaata 24999544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 44395683 - 44395633
Alignment:
Q  158 tctttttatgggttccttaaacaatacctttaagacacatgttaataagac 208  Q
    ||||||||||||||||||||||||| || ||| ||||| |||||| |||||    
T  44395683 tctttttatgggttccttaaacaatgcccttatgacacttgttaacaagac 44395633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 45079293 - 45079355
Alignment:
Q  33 aaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttg 95  Q
    |||||||||| ||| ||||| |||||| ||||||||||||||| |||| |||| || ||||||    
T  45079293 aaggaaaatgataacaagtgccctaagggcattgtttaagcatctaaatgtagaaagtttttg 45079355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 2e-45; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 21 - 182
Target Start/End: Original strand, 48488378 - 48488538
Alignment:
Q  21 aacaataaaaataaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataact 120  Q
    |||||||| | ||||||||||| ||| ||||| | |||| | ||||||||||||| ||||||||||||||||| ||||||  ||||||||||| ||||||    
T  48488378 aacaataatattaaggaaaatgctaacaagtggcttaagggtattgtttaagcatctaaaagtagcaactttt-gcattggaaattgtacggttataact 48488476  T
Q  121 ccaacaagtgtttgacttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
     ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  48488477 tcaacaagtgtttgacttatattttcaaagcataatttctttttatgggttccttaaacaat 48488538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 40198933 - 40199077
Alignment:
Q  37 aaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgac 136  Q
    |||||||||| |||||| ||||| ||||||||||||||| |||||||||||| ||||||||||| |||||||| ||| ||||||| ||||||||| | ||    
T  40198933 aaaatgttaacaagtgttctaagggcattgtttaagcatctaaaagtagcaattttttgcattgggaattgtatggttataactctaacaagtgtctaac 40199032  T
Q  137 ttattttttcaaagcataatatctttttatgggttccttaaacaa 181  Q
    |||| ||||||| ||||||| ||||||||||| ||| ||||||||    
T  40199033 ttatattttcaaggcataatttctttttatggattctttaaacaa 40199077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 61 - 208
Target Start/End: Complemental strand, 28514756 - 28514610
Alignment:
Q  61 gcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgacttattttttcaaagcataatatct 160  Q
    ||||||||||||||| ||||||||||||||||| ||||||  ||||||||||| ||||||  |||||||||||||||||| ||||||| ||||||| |||    
T  28514756 gcattgtttaagcatctaaaagtagcaactttt-gcattggaaattgtacggttataacttgaacaagtgtttgacttatattttcaaggcataatttct 28514658  T
Q  161 ttttatgggttccttaaacaatacctttaagacacatgttaataagac 208  Q
    |||||||||||||||||||||| || ||| | ||| |||||| |||||    
T  28514657 ttttatgggttccttaaacaatgcccttagggcacttgttaacaagac 28514610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 35 - 208
Target Start/End: Complemental strand, 31191516 - 31191345
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttg 134  Q
    |||||||||||| ||||| |||||| ||||||||||||||| ||||||||||||| |||| |||||  ||||| ||||| ||||||  ||||||||||||    
T  31191516 ggaaaatgttaacaagtgccctaagggcattgtttaagcatctaaaagtagcaac-ttttacattggaaattgcacggttataactttaacaagtgtttg 31191418  T
Q  135 acttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagac 208  Q
    |||||| ||||||| ||||||| ||||||||| ||||||||||||||| || ||| | ||| |||||| |||||    
T  31191417 acttatattttcaaggcataatttctttttat-ggttccttaaacaatgcccttagggcacttgttaacaagac 31191345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 35 - 213
Target Start/End: Original strand, 45618421 - 45618597
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttg 134  Q
    ||||||| |||| |||||||||||| |||| ||||||||||||| |||||||||||||| ||||||| |||||||| ||  | |||  || || | ||||    
T  45618421 ggaaaatattaacaagtgtcctaagggcat-gtttaagcatatagaagtagcaactttt-gcattgaaaattgtaccgttgtgactttaataaatatttg 45618518  T
Q  135 acttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagacactaa 213  Q
    |||||| |||||||  |||||| || ||||||||||||||||||||||||| ||| | ||| |||||||||||| ||||    
T  45618519 acttatattttcaagacataatttccttttatgggttccttaaacaatacccttagggcacttgttaataagaccctaa 45618597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 25 - 182
Target Start/End: Original strand, 23247692 - 23247847
Alignment:
Q  25 ataaaaataaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaa 124  Q
    ||||||||||| |||||||||| ||||| ||||||  |||||||||| |||  |||| ||||||||||| ||||||  ||||| ||||| |||||| |||    
T  23247692 ataaaaataagaaaaatgttaacaagtgccctaaggacattgtttaaacatcaaaaa-tagcaactttt-gcattggaaattgaacggttataacttcaa 23247789  T
Q  125 caagtgtttgacttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||| || || |||||||    
T  23247790 caagtgtttgacttatattttcaaggcataatttctttttatggattactaaaacaat 23247847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 33 - 213
Target Start/End: Complemental strand, 10625092 - 10624913
Alignment:
Q  33 aaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtt 132  Q
    ||||||||| |||| |||||  ||||| ||||||||| ||||||||||||||| ||||||| ||||||| ||||||||||| || |||  || |||||||    
T  10625092 aaggaaaattttaacaagtgctctaagggcattgtttcagcatataaaagtagaaactttt-gcattgaaaattgtacggttatgactataataagtgtt 10624994  T
Q  133 tgacttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagacactaa 213  Q
    |||||| | |||||||  |||||| ||||||| ||||||| ||||||||| || |||  |||| |||||| ||||| ||||    
T  10624993 tgacttgtattttcaagacataatttctttttgtgggttctttaaacaatgcccttagaacacttgttaacaagaccctaa 10624913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 35 - 185
Target Start/End: Complemental strand, 19086447 - 19086300
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttg 134  Q
    |||||||||||| ||||| ||||||   |||||||||| || ||||| ||| || ||||||| |||  |||||||||||||||||| |||||||||||||    
T  19086447 ggaaaatgttaacaagtgccctaagg--attgtttaagaatctaaaaatagtaa-tttttgctttggaaattgtacggtaataacttcaacaagtgtttg 19086351  T
Q  135 acttattttttcaaagcataatatctttttatgggttccttaaacaatacc 185  Q
    |||||| ||||||| ||||||| ||||||||||| ||  ||||||||||||    
T  19086350 acttatattttcaaggcataatttctttttatggattttttaaacaatacc 19086300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 25 - 174
Target Start/End: Original strand, 37869682 - 37869830
Alignment:
Q  25 ataaaaataaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaa 124  Q
    ||||||| |||||||||||||| |||    |||| | ||||||||||| |||||||||||||||||||| ||||||| ||||||||||| || |||  ||    
T  37869682 ataaaaacaaggaaaatgttaacaagctctctaaaaacattgtttaagtatataaaagtagcaactttt-gcattgaaaattgtacggttatgactttaa 37869780  T
Q  125 caagtgtttgacttattttttcaaagcataatatctttttatgggttcct 174  Q
    |||||||||||||||| |||| ||| |||||| ||||||| || ||||||    
T  37869781 caagtgtttgacttatatttttaaaacataatttctttttgtgagttcct 37869830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 37 - 185
Target Start/End: Original strand, 25119917 - 25120064
Alignment:
Q  37 aaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgac 136  Q
    |||||||||| ||||| |||||   |||||||||||||||||||||||||||| |||||||||   ||||||| ||| ||||||  ||||  | |||||     
T  25119917 aaaatgttaacaagtgccctaaagacattgtttaagcatataaaagtagcaac-ttttgcattataaattgtatggttataactttaacatatatttgaa 25120015  T
Q  137 ttattttttcaaagcataatatctttttatgggttccttaaacaatacc 185  Q
    || | |||||||  || ||| ||||||| ||| ||||||||||||||||    
T  25120016 ttgtattttcaagacacaatttctttttgtggattccttaaacaatacc 25120064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 192
Target Start/End: Original strand, 28646616 - 28646744
Alignment:
Q  63 attgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgacttattttttcaaagcataatatcttt 162  Q
    ||||||||||||||||||||||||||| |||| |||||  ||||||||||| || |||  ||||| | |||||||||| |||| ||  |||||| |||||    
T  28646616 attgtttaagcatataaaagtagcaac-ttttacattggaaattgtacggttatgactttaacaaatttttgacttatatttttaagacataatttcttt 28646714  T
Q  163 ttatgggttccttaaacaatacctttaaga 192  Q
    || | | ||| |||||||||| | ||||||    
T  28646715 ttgtagattctttaaacaatatccttaaga 28646744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 208
Target Start/End: Original strand, 45662210 - 45662378
Alignment:
Q  37 aaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgac 136  Q
    ||||||||||  |||||| |||| | ||||||||||||| ||||||||  || |||||  ||||  ||||| ||||| || |||  ||||  ||| ||||    
T  45662210 aaaatgttaacgagtgtcttaagggtattgtttaagcatctaaaagtaataa-tttttatattggaaattgcacggttatgactttaaca--tgtatgac 45662306  T
Q  137 ttattttttcaaagcataatatctttttatggg-ttccttaaacaatacctttaagacacatgttaataagac 208  Q
    |||| |||||||| |||||| |||||||||||| |||||||||||||||  ||||||||| |||||| |||||    
T  45662307 ttatattttcaaa-cataatttctttttatgggattccttaaacaatactcttaagacacttgttaacaagac 45662378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 138
Target Start/End: Original strand, 5081735 - 5081837
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttg 134  Q
    |||||||||||| ||||| |||||  || |||||||| ||| ||||||||||||| |||| |||||| | ||||| ||| || |||  | ||||||||||    
T  5081735 ggaaaatgttaacaagtgccctaaaggcgttgtttaaacatctaaaagtagcaac-ttttacattgaaatttgtagggttatgactttatcaagtgtttg 5081833  T
Q  135 actt 138  Q
    ||||    
T  5081834 actt 5081837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 8584116 - 8584191
Alignment:
Q  105 ttgtacggtaataactccaacaagtgtttgacttattttttcaaagcataatatctttttatgggttccttaaaca 180  Q
    |||| |||| |||||| |||||||||||| |||||| |||||||   ||||| | ||||||||| |||||||||||    
T  8584116 ttgttcggttataacttcaacaagtgtttaacttatattttcaagatataatttatttttatggattccttaaaca 8584191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 1111732 - 1111818
Alignment:
Q  96 cattgagaattgtacggtaataactccaacaagtgtttgacttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    |||||| ||||||| ||| || |||  |||||||||||||||||| |||||||| ||||||   ||||| ||||||| |||| ||||    
T  1111732 cattgaaaattgtatggttatgactttaacaagtgtttgacttatattttcaaaacataattattttttgtgggttctttaagcaat 1111818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 1e-43; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 223863 - 224036
Alignment:
Q  34 aggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgttt 133  Q
    ||||||||||||| |||| || |||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||| |||||| ||| ||||||||    
T  223863 aggaaaatgttaacaagtatcttaagagcattgtttaagcatctaaaagtagcaa-tttttgcattgaaaattgtacggttataacttcaataagtgttt 223961  T
Q  134 gacttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagac 208  Q
    ||||||| ||||||| | ||||| |||||||||| |||||||||||||| | |||| | ||| |||||| |||||    
T  223962 gacttatattttcaaggtataatttctttttatgagttccttaaacaatgcatttagggcacttgttaacaagac 224036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 33 - 182
Target Start/End: Complemental strand, 36904108 - 36903960
Alignment:
Q  33 aaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtt 132  Q
    |||||||||| ||| |||||||||||| ||||||||||||||| ||||||||||||| ||||||||||  ||||||||||| || |||  || |||||||    
T  36904108 aaggaaaatgctaacaagtgtcctaagggcattgtttaagcatctaaaagtagcaac-ttttgcattggaaattgtacggttatgactttaataagtgtt 36904010  T
Q  133 tgacttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    |||||| | |||||||  |||||| ||||||| |||||||||||||||||    
T  36904009 tgacttgtattttcaagacataatttctttttgtgggttccttaaacaat 36903960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 32 - 164
Target Start/End: Original strand, 9047570 - 9047701
Alignment:
Q  32 taaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgt 131  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| |||| |||||| ||||||||||| || |||  |||||||||    
T  9047570 taaggaaaatgttaacaagtgtcctaagagcattgtttaatcatataaaagtaacaac-ttttacattgaaaattgtacggttatgactttaacaagtgt 9047668  T
Q  132 ttgacttattttttcaaagcataatatcttttt 164  Q
    ||||||| | |||||||| |||||| |||||||    
T  9047669 ttgacttgtattttcaaaacataatttcttttt 9047701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 37 - 214
Target Start/End: Complemental strand, 38402679 - 38402503
Alignment:
Q  37 aaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgac 136  Q
    |||||| ||| |||||  |||||| ||||||||| |||| ||||||||||||||||| | ||||  ||||||||||| || |||  || |||||||| ||    
T  38402679 aaaatgctaacaagtgctctaagaacattgtttaggcatctaaaagtagcaactttt-gtattggaaattgtacggttatgactttaagaagtgtttaac 38402581  T
Q  137 ttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagacactaaa 214  Q
    || | |||||||| |||||| ||||||||||| ||||||||||||| || ||| ||||| |||||  ||||| |||||    
T  38402580 ttgtattttcaaaacataatttctttttatggattccttaaacaatgcccttatgacacttgttagcaagaccctaaa 38402503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 39791683 - 39791504
Alignment:
Q  28 aaaataaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaa 127  Q
    ||||| || |||||||||| || |||| |||  | |||||||||||||||||||||||||| |||||  |||   ||||||||| |||| |||  |||||    
T  39791683 aaaattagaaaaatgttaacaaatgtcttaaaggtattgtttaagcatataaaagtagcaa-tttttatattagaaattgtacgataatgactttaacaa 39791585  T
Q  128 gtgtttgacttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagac 208  Q
     |||||||||| | |||||||| |||||| ||||||| ||| ||| |||||||||||| ||| ||||| |||||| |||||    
T  39791584 atgtttgacttgtattttcaaaacataatttctttttgtggattctttaaacaatacccttaggacacttgttaacaagac 39791504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 63 - 207
Target Start/End: Complemental strand, 6563193 - 6563052
Alignment:
Q  63 attgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgacttattttttcaaagcataatatcttt 162  Q
    ||||||||||||||||||||||   |||||||| ||||  |||||| |||| |||| | ||| |||||||||| |||| |||| |||  ||||| | |||    
T  6563193 attgtttaagcatataaaagta---actttttgtattgtaaattgtgcggttataatttcaataagtgtttgatttatatttttaaaatataattttttt 6563097  T
Q  163 ttatgggttccttaaacaatacctttaagacacatgttaataaga 207  Q
    ||||||||||||||||||||| | ||||||||  |||||| ||||    
T  6563096 ttatgggttccttaaacaatatccttaagacatttgttaacaaga 6563052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 37 - 208
Target Start/End: Complemental strand, 19955220 - 19955050
Alignment:
Q  37 aaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgac 136  Q
    |||||||||| |||| | ||||  | ||| ||||||||||||||||||||||||||||  ||||  |||| || | | || |||  |||||||||||||     
T  19955220 aaaatgttaacaagtattctaaaggtattatttaagcatataaaagtagcaactttttt-attggaaattatatgattatgactttaacaagtgtttgat 19955122  T
Q  137 ttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagac 208  Q
    || | |||||||| |||||| ||||||| ||||||||||||||||| |  ||||| ||| |||||| |||||    
T  19955121 ttgtattttcaaaacataatttctttttgtgggttccttaaacaatgctcttaaggcacttgttaacaagac 19955050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 189
Target Start/End: Complemental strand, 41283450 - 41283329
Alignment:
Q  66 gtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgacttattttttcaaagcataatatcttttta 165  Q
    |||||| ||| ||||||||  ||||||| | ||||| ||||||||||| ||||||  ||||| | |||||||||| ||||||| | ||||| ||||||||    
T  41283450 gtttaaacatctaaaagtattaactttt-gtattgaaaattgtacggttataactt-aacaaatatttgacttatattttcaaggtataatttcttttta 41283353  T
Q  166 tgggttccttaaacaataccttta 189  Q
    || |||||||||||||||| ||||    
T  41283352 tgagttccttaaacaatactttta 41283329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 182
Target Start/End: Original strand, 3002345 - 3002484
Alignment:
Q  37 aaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgac 136  Q
    ||||| |||| |||| ||||||| | |||||||||||||||||||||||||| |||||||||||| |||| |||      ||||  ||||| ||||||||    
T  3002345 aaaatattaacaagtatcctaagggaattgtttaagcatataaaagtagcaattttttgcattgaaaattatac------aactttaacaaatgtttgac 3002438  T
Q  137 ttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    || | |||| ||   ||||| ||||||| ||||||| |||||||||    
T  3002439 ttgtatttttaagatataatttctttttgtgggttctttaaacaat 3002484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 181
Target Start/End: Complemental strand, 4428895 - 4428778
Alignment:
Q  63 attgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgacttattttttcaaagcataatatcttt 162  Q
    ||||||||||||| |||  ||||||||||||  |||||| |||| |||||| || |||  || || | |||||||||| | |||||  |||||| |||||    
T  4428895 attgtttaagcatctaattgtagcaactttta-cattgaaaattatacggttatgactttaataaatatttgacttatatcttcaagacataatttcttt 4428797  T
Q  163 ttatgggttccttaaacaa 181  Q
    |||||| ||||||||||||    
T  4428796 ttatggattccttaaacaa 4428778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 36 - 93
Target Start/End: Original strand, 1758433 - 1758490
Alignment:
Q  36 gaaaatgttaataagtgtcct-aagagcattgtttaagcatataaaagtagcaactttt 93  Q
    |||||||||||||||||| || |||| |||||||||||||| ||||||||| |||||||    
T  1758433 gaaaatgttaataagtgttcttaaga-cattgtttaagcatctaaaagtagtaactttt 1758490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 9559702 - 9559629
Alignment:
Q  128 gtgtttgacttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgtta 201  Q
    ||||||||||| | |||||||| || ||| | ||||| || || |||||||||||||| ||||||||| |||||    
T  9559702 gtgtttgacttgtattttcaaaacaaaatttatttttgtgagtaccttaaacaatacccttaagacacttgtta 9559629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 182
Target Start/End: Complemental strand, 15335952 - 15335832
Alignment:
Q  61 gcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgacttattttttcaaagcataatatct 160  Q
    ||||||||||||||| |||||||||||| ||||||||||   ||||||||  | || |||  ||||  |||||||||| | |||||||  || ||  |||    
T  15335952 gcattgtttaagcatctaaaagtagcaa-tttttgcatttgaaattgtacaattatgactttaacatatgtttgacttgtattttcaagacaaaaattct 15335854  T
Q  161 ttttatgggttccttaaacaat 182  Q
     ||| |||||||||||||||||    
T  15335853 ctttgtgggttccttaaacaat 15335832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 35 - 182
Target Start/End: Complemental strand, 37624971 - 37624825
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttg 134  Q
    |||||||||||| ||||| | ||||  |||||||||||||| ||||||||| ||||||| ||||||| ||||||||||| ||||||  ||||||||||||    
T  37624971 ggaaaatgttaacaagtgccttaaggacattgtttaagcatctaaaagtagtaactttt-gcattgaaaattgtacggttataactttaacaagtgtttg 37624873  T
Q  135 acttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    |||||| |||||||||||| || |||||||||||||||||||||||||    
T  37624872 acttatattttcaaagcattatttctttttatgggttccttaaacaat 37624825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 34 - 182
Target Start/End: Complemental strand, 35808835 - 35808688
Alignment:
Q  34 aggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgttt 133  Q
    ||||||||||||| ||||| | ||||  |||||||||||||| ||||||||||||||||| ||||||| ||||||||||| |||||| |||| |||||||    
T  35808835 aggaaaatgttaacaagtgccataaggacattgtttaagcatctaaaagtagcaactttt-gcattgaaaattgtacggttataacttcaactagtgttt 35808737  T
Q  134 gacttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    ||||||| |||||||   ||||| |||||||||||||||||||||||||    
T  35808736 gacttatattttcaagatataatttctttttatgggttccttaaacaat 35808688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 28 - 216
Target Start/End: Original strand, 9093547 - 9093734
Alignment:
Q  28 aaaataaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaa 127  Q
    |||| |||||||||||||| |||||   |||| | ||||||||||  | ||||||||| || |||||||||||| ||||||||||| ||||||  |||||    
T  9093547 aaaaaaaggaaaatgttaacaagtgctttaagggtattgtttaagtctctaaaagtagtaa-tttttgcattgaaaattgtacggttataacttaaacaa 9093645  T
Q  128 gtgtttgacttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagacactaaaaa 216  Q
    ||||||||||||| ||||||| ||| ||| |||||||||||||||||||||||||  | ||| ||||| |||||| ||||| |||||||    
T  9093646 gtgtttgacttatattttcaaggcaaaatttctttttatgggttccttaaacaatgtccttaggacacttgttaacaagaccctaaaaa 9093734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 3121180 - 3121056
Alignment:
Q  56 taagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgacttattttttcaaagcataa 155  Q
    |||| ||||||||||||||| |||||||||| |||||  ||||||| ||||||||||| |||||| |||||| || ||||||||| |||||||  |||||    
T  3121180 taagggcattgtttaagcatctaaaagtagcgacttt--gcattgaaaattgtacggttataacttcaacaaatgattgacttatattttcaagacataa 3121083  T
Q  156 tatctttttatgggttccttaaacaat 182  Q
    | |||||||||||||||||||||||||    
T  3121082 tttctttttatgggttccttaaacaat 3121056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 35 - 178
Target Start/End: Original strand, 16958335 - 16958477
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttg 134  Q
    |||||||||||| |||||||  ||| ||||||||||||||| |||||||||||||||||  |||||  ||||| ||| | |||||| |||||||||||||    
T  16958335 ggaaaatgttaacaagtgtcgcaagggcattgtttaagcatctaaaagtagcaactttta-cattggaaattgcacgtttataacttcaacaagtgtttg 16958433  T
Q  135 acttattttttcaaagcataatatctttttatgggttccttaaa 178  Q
    |||||| |||||||  |||||| ||||||||||| |||||||||    
T  16958434 acttatattttcaagacataatttctttttatggattccttaaa 16958477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 32 - 182
Target Start/End: Complemental strand, 41622059 - 41621910
Alignment:
Q  32 taaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgt 131  Q
    ||||||||||||||| ||||| | |||| ||||||||||||||||||||||||||||| |||| |||||| ||||||||| | || |||  ||||||||     
T  41622059 taaggaaaatgttaacaagtgccataagggcattgtttaagcatataaaagtagcaac-ttttacattgaaaattgtacgattatgactttaacaagtga 41621961  T
Q  132 ttgacttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    |||| || | |||||||  |||||| ||||||| |||||||||||||||||    
T  41621960 ttgatttgtattttcaagacataatttctttttgtgggttccttaaacaat 41621910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 35 - 208
Target Start/End: Complemental strand, 52270608 - 52270436
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttg 134  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||| ||||||| ||||||||||  |||||||||   || |||  ||||||||||||    
T  52270608 ggaaaatgttaacaagtgccctaagggcattgtttaagcatataaaaatagcaac-ttttgcattggaaattgtacgagtatgactgtaacaagtgtttg 52270510  T
Q  135 acttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagac 208  Q
    |||||| |||||||  |||| | || |||| ||||||||||||||||| || ||| | ||| |||||| |||||    
T  52270509 acttatattttcaagacatattttccttttgtgggttccttaaacaatgcccttagggcacttgttaacaagac 52270436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 35 - 207
Target Start/End: Original strand, 31861526 - 31861695
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttg 134  Q
    |||||||||||| || || || ||| ||||||||||||||| ||||| ||||||||||| ||||||  |||||| |||| |||| |  ||||||||||||    
T  31861526 ggaaaatgttaacaaatgccc-aagggcattgtttaagcatctaaaa-tagcaactttt-gcattggaaattgtccggttataattttaacaagtgtttg 31861622  T
Q  135 acttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataaga 207  Q
    |||||| |||||||  |||||| ||||||||||| |||||||||||||||  ||| ||||| |||||| ||||    
T  31861623 acttatattttcaagacataatttctttttatggattccttaaacaatactcttaggacacttgttaacaaga 31861695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 34 - 182
Target Start/End: Original strand, 25231478 - 25231625
Alignment:
Q  34 aggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgttt 133  Q
    |||||||| |||  ||||| | |||| |||| ||| |||||| ||||| ||||||||||| ||||||  ||||||||||| |||||| |||||| | |||    
T  25231478 aggaaaatattagcaagtgccttaagggcatggttcaagcatctaaaactagcaactttt-gcattggaaattgtacggttataacttcaacaaatattt 25231576  T
Q  134 gacttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    ||||||| |||||||  |||||| ||||||||||| |||||||||||||    
T  25231577 gacttatattttcaagacataatttctttttatggattccttaaacaat 25231625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 36 - 171
Target Start/End: Complemental strand, 43595121 - 43594987
Alignment:
Q  36 gaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttga 135  Q
    ||||||||||| ||||   |||||| |||||||||||||| ||||||||||||| ||||| ||||| ||||||||||| |||||| ||| ||| |||| |    
T  43595121 gaaaatgttaacaagtactctaagaacattgtttaagcatctaaaagtagcaac-ttttgtattgaaaattgtacggttataacttcaagaagggtttaa 43595023  T
Q  136 cttattttttcaaagcataatatctttttatgggtt 171  Q
    ||||  |||||||  |||||| ||||||||||||||    
T  43595022 cttacattttcaagacataatttctttttatgggtt 43594987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 35 - 182
Target Start/End: Original strand, 26876052 - 26876198
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttg 134  Q
    |||||||| ||| |||||  ||||| | ||||||||||||||||||||||||| ||||| | ||||  ||||||| ||| || |||  || |||||||||    
T  26876052 ggaaaatgctaacaagtgctctaagggtattgtttaagcatataaaagtagcagctttt-gtattggaaattgtagggttatgactttaagaagtgtttg 26876150  T
Q  135 acttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    |||| | |||||||  |||||| ||||||| |||||||||||||||||    
T  26876151 acttgtattttcaagccataatttctttttttgggttccttaaacaat 26876198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 56 - 183
Target Start/End: Complemental strand, 41735549 - 41735423
Alignment:
Q  56 taagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgacttattttttcaaagcataa 155  Q
    |||| ||||||||||||||| |||||||||||| |||||| ||||  ||||||||| | || |||  |||||||||||||||| | |||||||  |||||    
T  41735549 taagggcattgtttaagcatctaaaagtagcaa-tttttgtattggaaattgtacgattatgactttaacaagtgtttgacttgtattttcaagacataa 41735451  T
Q  156 tatctttttatgggttccttaaacaata 183  Q
    | ||||||| || ||| |||||||||||    
T  41735450 tttctttttgtgagtttcttaaacaata 41735423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 201
Target Start/End: Complemental strand, 46737577 - 46737411
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataac-tccaacaagtgttt 133  Q
    |||||||| ||| ||| || ||||||||||| ||||||||||||||| || |||| ||||||||||| ||||||||| |  | || |  ||||| |||||    
T  46737577 ggaaaatgctaacaagcgttctaagagcattctttaagcatataaaaatatcaac-ttttgcattgaaaattgtacgattgtgacttttaacaaatgttt 46737479  T
Q  134 gacttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgtta 201  Q
     |||||| |||||||  ||| || ||||||| || ||||||||||||||  | ||||||||| |||||    
T  46737478 aacttatattttcaagacatgatttctttttgtgtgttccttaaacaatgtccttaagacacttgtta 46737411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 181
Target Start/End: Original strand, 8680477 - 8680621
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttg 134  Q
    |||||||||||| ||||| |||||  |||| |||||| | |||||||||| |||| ||||||||||  ||||||||| | || |||  ||||| |||||     
T  8680477 ggaaaatgttaacaagtgccctaaaggcatagtttaaacttataaaagtaccaac-ttttgcattggaaattgtacgattatgactttaacaaatgtttt 8680575  T
Q  135 acttattttttcaaagcataatatctttttatgggttccttaaacaa 181  Q
    |||||| |||||||| |||| | ||  ||||||||||||||||||||    
T  8680576 acttatattttcaaaacatattttc-ctttatgggttccttaaacaa 8680621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 207
Target Start/End: Complemental strand, 24504822 - 24504648
Alignment:
Q  32 taaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgt 131  Q
    |||| ||||||||||||||||| |||  || ||||||||||||| ||||| || |||| ||||| ||| | ||||||||||| ||||||  || |||| |    
T  24504822 taagaaaaatgttaataagtgttctacaagtattgtttaagcatctaaaaatatcaac-ttttgtattaaaaattgtacggttataactttaataagtat 24504724  T
Q  132 ttgacttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataaga 207  Q
    ||||| ||| |||| ||   |||||   ||||| ||| |||||||||||||| | ||||| ||| |||||| ||||    
T  24504723 ttgacatatattttaaagatataattattttttttggattccttaaacaataaccttaaggcacttgttaacaaga 24504648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 183
Target Start/End: Complemental strand, 43142163 - 43142051
Alignment:
Q  67 tttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgacttattttttcaaagcataatatctttttat 166  Q
    ||||||||||||||||||  || |||||||||||  ||||||| ||| || |||  |||||   |||||||||| |||||||  |||||| ||||||| |    
T  43142163 tttaagcatataaaagtaataa-tttttgcattggaaattgtaaggttatgactttaacaa---tttgacttatattttcaagacataatttctttttgt 43142068  T
Q  167 gggttccttaaacaata 183  Q
    |||||||||||||||||    
T  43142067 gggttccttaaacaata 43142051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 2168555 - 2168451
Alignment:
Q  77 taaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgacttattttttcaaagcataatatctttttatgggttcctta 176  Q
    |||||||| |||||||| ||||||| ||||||||||| |  |||  |||||||||||||||| | ||||||   |||||| | ||||||||||||| |||    
T  2168555 taaaagtaacaactttt-gcattgaaaattgtacggttacgactttaacaagtgtttgacttgtattttcaggacataatttatttttatgggttcttta 2168457  T
Q  177 aacaat 182  Q
    ||||||    
T  2168456 aacaat 2168451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 43432488 - 43432431
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttt 93  Q
    |||||||| ||| ||||||||| ||||||||||||||||||  ||||||||||| ||||    
T  43432488 ggaaaatgctaacaagtgtccttagagcattgtttaagcat-caaaagtagcaaatttt 43432431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 4e-34; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 8108354 - 8108210
Alignment:
Q  36 gaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttga 135  Q
    ||||||||||| |||||||||||  ||||||||||||||| |||||||| |||| ||||||||||  ||||||||||| |||||| ||||||||| ||||    
T  8108354 gaaaatgttaacaagtgtcctaaatgcattgtttaagcatctaaaagtaacaac-ttttgcattggaaattgtacggttataacttcaacaagtg-ttga 8108257  T
Q  136 cttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    ||||| ||||||| ||||||| ||||||| || ||||||||||||||    
T  8108256 cttatattttcaaggcataatttctttttttgtgttccttaaacaat 8108210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 35 - 213
Target Start/End: Original strand, 45249333 - 45249510
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttg 134  Q
    |||||||||||| ||||| | |||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||||| || |||  ||||| ||||||    
T  45249333 ggaaaatgttaacaagtgccttaagggcattgtttaagcatataaaagtagcaac-ttttgcattggaaattgtacggttatgactttaacaaatgtttg 45249431  T
Q  135 acttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagacactaa 213  Q
    |||| | |||||||  |||||| ||||||| ||||||||||||||||| || ||| | ||| |||||| ||||| ||||    
T  45249432 acttgtattttcaagacataatttctttttgtgggttccttaaacaatgcccttagggcacttgttaacaagaccctaa 45249510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 24 - 191
Target Start/End: Original strand, 53466191 - 53466357
Alignment:
Q  24 aataaaaataaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactcca 123  Q
    ||||| || |||||||| ||||| ||||||| |||   ||||||||||| || |||||| | |||||||| ||||||| ||||||||| | |||||| ||    
T  53466191 aataagaaaaaggaaaaggttaacaagtgtcttaaagacattgtttaagtatctaaaagaaacaactttt-gcattgaaaattgtacgattataacttca 53466289  T
Q  124 acaagtgtttgacttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaag 191  Q
    | ||||||||||||||| |||| |||||||||| ||||||||| ||||||||||||||| || |||||    
T  53466290 ataagtgtttgacttatatttttaaagcataatttctttttataggttccttaaacaatgccattaag 53466357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 33 - 181
Target Start/End: Complemental strand, 23919288 - 23919141
Alignment:
Q  33 aaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtt 132  Q
    |||||||||||||| ||||||  |||| ||||||||||||| | |||||||| |||||||| | ||||  ||||||||  | |||||| |||||||||||    
T  23919288 aaggaaaatgttaacaagtgttataagggcattgtttaagcctctaaaagtaacaactttt-gtattggaaattgtacaattataacttcaacaagtgtt 23919190  T
Q  133 tgacttattttttcaaagcataatatctttttatgggttccttaaacaa 181  Q
    |||| ||| ||||| |  |||||| ||||||||||||||||||||||||    
T  23919189 tgacatatattttcgagacataatttctttttatgggttccttaaacaa 23919141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 39611772 - 39611620
Alignment:
Q  34 aggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgttt 133  Q
    ||||||||| ||| |||||| ||||||||||||||||||||| | |||||||||| |||||||| ||| |||||||| || || |||  ||||  |||||    
T  39611772 aggaaaatgctaa-aagtgtgctaagagcattgtttaagcattttaaagtagcaa-tttttgcactgaaaattgtacagttatgactttaacatatgttt 39611675  T
Q  134 gacttattttttcaaagcataatatctttttatgggttccttaaacaataccttta 189  Q
    || || | ||||||| || |||| | |||||||| ||| ||||||||||| |||||    
T  39611674 gatttgtattttcaatgcgtaat-tttttttatgagtttcttaaacaatatcttta 39611620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 31580363 - 31580439
Alignment:
Q  132 ttgacttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagac 208  Q
    ||||||||| |||||||| |||||| | ||||| ||||||| |||||||||||| ||||||||| |||||| |||||    
T  31580363 ttgacttatattttcaaaacataatttttttttgtgggttctttaaacaatacccttaagacacttgttaacaagac 31580439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 56 - 203
Target Start/End: Complemental strand, 6488912 - 6488766
Alignment:
Q  56 taagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgacttattttttcaaagcataa 155  Q
    |||| ||||||||||||||| ||||||||||||| ||||||||||| ||||||||  | || |||  ||||||||||  |||| | |||| ||   ||||    
T  6488912 taagggcattgtttaagcatttaaaagtagcaac-ttttgcattgaaaattgtactattatgactttaacaagtgttgtacttgtatttttaagatataa 6488814  T
Q  156 tatctttttatgggttccttaaacaatacctttaagacacatgttaat 203  Q
    | ||||||| | ||||||||||||||| ||  || |||||||| ||||    
T  6488813 tctctttttgtaggttccttaaacaatgcccgtaggacacatgctaat 6488766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 182
Target Start/End: Complemental strand, 48993506 - 48993361
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttg 134  Q
    |||||||| ||| |||||  | ||| ||||||||||||||| |||||||||||||||||| |||||  |||||||| ||  | |||  |||||| |||||    
T  48993506 ggaaaatgctaacaagtgcaccaagggcattgtttaagcatctaaaagtagcaacttttt-cattggaaattgtac-gttgtgactttaacaagggtttg 48993409  T
Q  135 acttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    |||| | |||||||  |||||| || | || |||||||||||||||||    
T  48993408 acttttattttcaagacataatttcctcttgtgggttccttaaacaat 48993361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 33865386 - 33865307
Alignment:
Q  33 aaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggt 113  Q
    ||||||||||||||  |||| |||||   ||| |||||||||||||||||||||||| ||||||||||  |||||||||||    
T  33865386 aaggaaaatgttaacgagtgccctaaatacatcgtttaagcatataaaagtagcaac-ttttgcattggaaattgtacggt 33865307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 4e-31; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 37 - 182
Target Start/End: Complemental strand, 34339047 - 34338903
Alignment:
Q  37 aaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgac 136  Q
    |||||||||| ||||| |||||| | ||||||||||||| ||||| ||||||||||| ||||||  || |||  ||| |||||| |||||||||||||||    
T  34339047 aaaatgttaacaagtgccctaagggtattgtttaagcatctaaaaatagcaactttt-gcattggaaagtgtgtggttataacttcaacaagtgtttgac 34338949  T
Q  137 ttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    |||| ||||||| ||||||| ||||||||||||||| |||||||||    
T  34338948 ttatattttcaaggcataatttctttttatgggttctttaaacaat 34338903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 32 - 182
Target Start/End: Complemental strand, 15477034 - 15476885
Alignment:
Q  32 taaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgt 131  Q
    ||||||||||||||| |||||  |||||||||||||||||||||||||||||||||| |||||  ||||| |||||||||   || |||  |||||||||    
T  15477034 taaggaaaatgttaacaagtgctctaagagcattgtttaagcatataaaagtagcaa-tttttttattgaaaattgtacgagtatgactttaacaagtgt 15476936  T
Q  132 ttgacttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    ||||||||| |||||||  |||| |  | ||||||| ||||||||||||||    
T  15476935 ttgacttatattttcaagacatatttcccttttatgcgttccttaaacaat 15476885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 33 - 140
Target Start/End: Original strand, 10284952 - 10285058
Alignment:
Q  33 aaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtt 132  Q
    |||||||||||||| ||||| ||| |||||||||||||||||| ||||||||| ||| ||||| ||||  ||||||||||| |||||| |||||| | ||    
T  10284952 aaggaaaatgttaacaagtgccctgagagcattgtttaagcatctaaaagtagtaac-ttttgtattggaaattgtacggttataacttcaacaaatatt 10285050  T
Q  133 tgacttat 140  Q
    ||||||||    
T  10285051 tgacttat 10285058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 201
Target Start/End: Original strand, 32292188 - 32292356
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtag---caactttttgcattgagaattgtacggtaataactccaacaagtgt 131  Q
    |||||||| |||||| |||  ||||  ||||||||||| || |||||||||   |||||||| | | ||| ||||||| | | ||||||  ||||| |||    
T  32292188 ggaaaatggtaataaatgttttaaggacattgtttaagtatttaaaagtagtagcaactttt-gtaatgaaaattgtaggtttataactttaacaaatgt 32292286  T
Q  132 ttgacttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgtta 201  Q
    ||||||||| |||||||| | |||| | ||||||| |||||||||||||||||| ||| ||||| |||||    
T  32292287 ttgacttatattttcaaaacgtaatttatttttataggttccttaaacaatacccttaggacacttgtta 32292356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 104 - 182
Target Start/End: Complemental strand, 14663056 - 14662978
Alignment:
Q  104 attgtacggtaataactccaacaagtgtttgacttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    ||||| |||| |||||| ||||||||||||||||||| |||| || ||||||| | |||||||| ||||||||||||||    
T  14663056 attgtgcggttataacttcaacaagtgtttgacttatatttttaatgcataatttttttttatgagttccttaaacaat 14662978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 1088186 - 1088239
Alignment:
Q  36 gaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaact 90  Q
    ||||||| |||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  1088186 gaaaatgctaataagtgtccaaag-gcattgtttaagcatctaaaagtagcaact 1088239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 93
Target Start/End: Complemental strand, 20921035 - 20920978
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttt 93  Q
    |||||||||||| ||||| ||| |||||||||||||||||| || ||||||||| ||||    
T  20921035 ggaaaatgttaacaagtgcccttagagcattgtttaagcat-tagaagtagcaaatttt 20920978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 26362234 - 26362279
Alignment:
Q  48 aagtgtcctaagagcattgtttaagcatataaaagtagcaactttt 93  Q
    ||||||| ||||| |||| |||||||||||||||||||||| ||||    
T  26362234 aagtgtcataagaacattctttaagcatataaaagtagcaattttt 26362279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 183
Target Start/End: Original strand, 29045332 - 29045452
Alignment:
Q  62 cattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgacttattttttcaaagcataatatctt 161  Q
    |||||||||| ||| ||||||||| || |||||||||| | |||| ||  || || |||  ||||||||||||| |||| |||| ||   ||||| ||||    
T  29045332 cattgtttaaccatctaaaagtagtaa-tttttgcattaaaaattatatagttatgactttaacaagtgtttgatttatatttttaatatataatttctt 29045430  T
Q  162 tttatgggttccttaaacaata 183  Q
    ||| ||||||||||||| ||||    
T  29045431 tttgtgggttccttaaataata 29045452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 36564010 - 36563851
Alignment:
Q  19 ataacaataaaaataaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataa 118  Q
    |||| ||||| |||||||||| |||||| |||||  | ||| ||||||||||||||| |||||||||||||||||  |||||| ||||||||||  ||||    
T  36564010 ataataataataataaggaaa-tgttaacaagtgctccaagggcattgtttaagcatttaaaagtagcaactttta-cattgaaaattgtacggatataa 36563913  T
Q  119 ctccaacaagtgtttgacttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    ||  |||||||||||||||||| ||||||| ||||||| ||||||  || ||||||||||||||    
T  36563912 ctttaacaagtgtttgacttatattttcaaggcataatttctttt--tgagttccttaaacaat 36563851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 32 - 182
Target Start/End: Original strand, 42410166 - 42410315
Alignment:
Q  32 taaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgt 131  Q
    |||| |||||||||| |||||||||||  ||||||||||| ||| ||||||||||||| ||||||||||  |||| || |||| | ||   |||||||||    
T  42410166 taagaaaaatgttaacaagtgtcctaaaggcattgtttaatcatctaaaagtagcaac-ttttgcattggaaattatatggtattgaccttaacaagtgt 42410264  T
Q  132 ttgacttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    ||||||| | |||||||  |||||| ||||||| |||||||||||||||||    
T  42410265 ttgacttgtattttcaagacataatttctttttgtgggttccttaaacaat 42410315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 37 - 182
Target Start/End: Complemental strand, 894921 - 894777
Alignment:
Q  37 aaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgac 136  Q
    |||||||||| ||||| |||||  ||||||||||||||| ||||||||||||| |||||  |||| ||||||||| | || |||  ||||||||||||||    
T  894921 aaaatgttaacaagtgccctaacggcattgtttaagcatctaaaagtagcaac-ttttgtgttgaaaattgtacgattatgactttaacaagtgtttgac 894823  T
Q  137 ttattttttcaaagcataatatctttttatgggttccttaaacaat 182  Q
    || |  ||||||  |||||| || |||| |||||||||||||||||    
T  894822 ttgtactttcaagacataatttccttttgtgggttccttaaacaat 894777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 63 - 195
Target Start/End: Original strand, 13984245 - 13984376
Alignment:
Q  63 attgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgacttattttttcaaagcataatatcttt 162  Q
    ||||||||| ||| |||||||||||||||||  |||||  ||| ||||||| |||||| ||| || |||||||||||| |||| |||||||||| |||||    
T  13984245 attgtttaaacatctaaaagtagcaactttta-cattggaaatcgtacggttataacttcaataaatgtttgacttatatttttaaagcataatttcttt 13984343  T
Q  163 ttatgggttccttaaacaatacctttaagacac 195  Q
    ||| || || ||||||||||| ||||| |||||    
T  13984344 ttacggattacttaaacaatatctttatgacac 13984376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 32 - 148
Target Start/End: Complemental strand, 10040548 - 10040435
Alignment:
Q  32 taaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgt 131  Q
    |||||| |||||||| ||||| |||||| ||||||||||||||| ||||||||| ||| ||||||||||  |||||| |||| |||||| |||||| |||    
T  10040548 taaggataatgttaacaagtgccctaagggcattgtttaagcatctaaaagtagtaac-ttttgcattggaaattgtccggttataacttcaacaaatgt 10040450  T
Q  132 ttgacttattttttcaa 148  Q
    |  |||||| |||||||    
T  10040449 t--acttatattttcaa 10040435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 36 - 180
Target Start/End: Original strand, 38067686 - 38067829
Alignment:
Q  36 gaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttga 135  Q
    ||||||||||| |||||  |||| | |||||||||||||| ||||||||  ||| ||||| ||||| ||||||||| | || |||  ||||| |||||||    
T  38067686 gaaaatgttaacaagtgctctaataacattgtttaagcatctaaaagtattaac-ttttgtattgaaaattgtacgatgatgactttaacaaatgtttga 38067784  T
Q  136 cttattttttcaaagcataatatctttttatgggttccttaaaca 180  Q
    ||| | ||||||| ||||||| ||||||| ||| || ||||||||    
T  38067785 cttgtattttcaaggcataatttctttttgtggatttcttaaaca 38067829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 3831352 - 3831519
Alignment:
Q  32 taaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgt 131  Q
    |||| |||||| ||| ||||| ||||||  |||||||||||||| ||||||||| || |||||||||||  |||||||| || || |||  |||| ||||    
T  3831352 taagaaaaatgctaacaagtgccctaaggccattgtttaagcatctaaaagtag-aaatttttgcattggaaattgtacagttatgactttaacatgtgt 3831450  T
Q  132 ttgacttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgtta 201  Q
    |  | || | |||||||  |||||| | ||||||||||||| ||||||||| || ||||||||| |||||    
T  3831451 tgaatttgtattttcaagacataat-tttttttatgggttctttaaacaatgcccttaagacacttgtta 3831519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 37297114 - 37296983
Alignment:
Q  35 ggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttg 134  Q
    |||||||||||| ||||||| |||  | |||| |||| ||| ||||||||||||| ||||||||||| ||||||| | | | || | |||||||||||||    
T  37297114 ggaaaatgttaacaagtgtcataatggtattgcttaaccatctaaaagtagcaac-ttttgcattgaaaattgtaggattacaatttcaacaagtgtttg 37297016  T
Q  135 acttattttttcaaagcataatatctttttatg 167  Q
    | |||| ||||||| | ||||| |||| |||||    
T  37297015 atttatattttcaaggtataatttcttgttatg 37296983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 185
Target Start/End: Original strand, 34038796 - 34038917
Alignment:
Q  60 agcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgacttattttttcaaagcataatatc 159  Q
    |||||||||||||||| ||||||||| ||||||| ||| ||  ||||||||||| |||| |  ||    |||||||||||| ||||||| ||||||| ||    
T  34038796 agcattgtttaagcatctaaaagtagtaactttt-gcaatggaaattgtacggttataagtttaaa---tgtttgacttatattttcaatgcataatttc 34038891  T
Q  160 tttttatgggttccttaaacaatacc 185  Q
    ||||||||  || |||||||||||||    
T  34038892 tttttatgaatttcttaaacaatacc 34038917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 182
Target Start/End: Original strand, 14104303 - 14104416
Alignment:
Q  68 ttaagcatataaaagtagcaactttttgcattgagaattgtacggt--aataactccaacaagtgtttgacttattttttcaaagcataatatcttttta 165  Q
    |||||||| ||||||||||||| ||||||||||| ||||| |||||   |||||| |||||||| |||||||||  ||||||| ||||||| ||||||||    
T  14104303 ttaagcatctaaaagtagcaac-ttttgcattgaaaattgcacggttatataacttcaacaagtatttgactta-attttcaaggcataat-tcttttta 14104399  T
Q  166 tgggttccttaaacaat 182  Q
    | | |||||| ||||||    
T  14104400 tagattccttcaacaat 14104416  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 51049962 - 51049906
Alignment:
Q  37 aaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttt 93  Q
    |||||| ||| |||||  ||||| |||||||||||||||||||||||||||||||||    
T  51049962 aaaatgctaacaagtgctctaagggcattgtttaagcatataaaagtagcaactttt 51049906  T

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Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 13208152 - 13208089
Alignment:
Q  30 aataaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttt 93  Q
    |||||| |||||| ||| ||||||||||||  |||||||||||||| |||||||| ||||||||    
T  13208152 aataagaaaaatgctaacaagtgtcctaaggacattgtttaagcatctaaaagtaacaactttt 13208089  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 3527653 - 3527718
Alignment:
Q  28 aaaataaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttt 93  Q
    ||||| ||||||||| ||| || | |||| | ||||||||||||| |||||||||||| |||||||    
T  3527653 aaaattaggaaaatggtaacaaatatccttaaagcattgtttaagtatataaaagtagtaactttt 3527718  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 93
Target Start/End: Original strand, 36384854 - 36384891
Alignment:
Q  56 taagagcattgtttaagcatataaaagtagcaactttt 93  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  36384854 taagagtattgtttaagcatataaaagtaacaactttt 36384891  T

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Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 37 - 214
Target Start/End: Original strand, 33134163 - 33134340
Alignment:
Q  37 aaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgac 136  Q
    |||||||||| |||||  |||| || ||||||||| ||| ||||||||  || ||||||||||   |||||||| || |||||| |||||| ||||||||    
T  33134163 aaaatgttaacaagtgcgctaaaagtattgtttaaacatctaaaagtataaa-tttttgcattagaaattgtacagttataacttcaacaaatgtttgac 33134261  T
Q  137 -ttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagacactaaa 214  Q
     |||| ||||  | ||||||| | ||||||||||||||||||||||| |||||||||||| |||||| ||||| |||||    
T  33134262 cttatatttttgaggcataatttttttttatgggttccttaaacaatgcctttaagacacttgttaacaagaccctaaa 33134340  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 41 - 221
Target Start/End: Original strand, 6100643 - 6100822
Alignment:
Q  41 tgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgacttat 140  Q
    |||||| ||| | ||||||  |||||||||||||||||||||||||||| ||||||||||| |||| || ||| || |||  || ||||||||||| | |    
T  6100643 tgttaacaagagccctaaggacattgtttaagcatataaaagtagcaac-ttttgcattgaaaattatagggttatgactttaagaagtgtttgacatgt 6100741  T
Q  141 tttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagacactaaaaataatt 221  Q
     |||||||  |||||| || |||| ||||||||||||||||| || ||| | ||| |||||| ||||| ||| || |||||    
T  6100742 attttcaagacataatttccttttgtgggttccttaaacaatgcccttagggcacttgttaacaagaccctataattaatt 6100822  T

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Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 32147844 - 32147987
Alignment:
Q  37 aaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtttgac 136  Q
    |||||||||| |||||  ||||| ||||||||||||||||||||||||| || |||||||||||  ||||||||||| || |||  || || | |||||     
T  32147844 aaaatgttaagaagtgcactaagggcattgtttaagcatataaaagtagtaa-tttttgcattgcaaattgtacggttatgactttaataaatatttgat 32147942  T
Q  137 ttattttttcaaagcataatatctttttatgggttccttaaacaa 181  Q
    || | |||||||| |||||| ||||||| ||| ||| ||||||||    
T  32147943 ttgtattttcaaaacataatttctttttgtggattctttaaacaa 32147987  T

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Target: scaffold0002 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 33 - 208
Target Start/End: Original strand, 433847 - 434019
Alignment:
Q  33 aaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttttgcattgagaattgtacggtaataactccaacaagtgtt 132  Q
    ||||||||| ||||||||||  |||||   ||||||||||||||||||||||||||| ||| | ||||  |||||||   | || |||  ||||||||||    
T  433847 aaggaaaatattaataagtgctctaaggatattgtttaagcatataaaagtagcaac-tttcgtattgtaaattgta--attatgactttaacaagtgtt 433943  T
Q  133 tgacttattttttcaaagcataatatctttttatgggttccttaaacaatacctttaagacacatgttaataagac 208  Q
    |||||||| |||||||  |||||| | ||||| |||||| |||||||||| || |||||  || |||||| |||||    
T  433944 tgacttatattttcaagacataatttttttttgtgggtttcttaaacaatgcccttaaggtacttgttaacaagac 434019  T

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Target: scaffold0020 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 93
Target Start/End: Original strand, 171560 - 171620
Alignment:
Q  33 aaggaaaatgttaataagtgtcctaagagcattgtttaagcatataaaagtagcaactttt 93  Q
    |||||||||| ||| ||||| | ||| | |||||||||||||| |||||||||||||||||    
T  171560 aaggaaaatgctaacaagtgccttaaaaacattgtttaagcatctaaaagtagcaactttt 171620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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