View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18236_low_4 (Length: 725)

Name: NF18236_low_4
Description: NF18236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18236_low_4
NF18236_low_4
[»] scaffold0110 (7 HSPs)
scaffold0110 (1-432)||(13246-13670)
scaffold0110 (1-432)||(20983-21407)
scaffold0110 (4-150)||(30106-30254)
scaffold0110 (598-715)||(21924-22041)
scaffold0110 (465-570)||(13663-13769)
scaffold0110 (465-570)||(21400-21506)
scaffold0110 (151-276)||(30224-30349)
[»] chr1 (35 HSPs)
chr1 (275-512)||(5939623-5939859)
chr1 (272-565)||(28522879-28523171)
chr1 (423-565)||(46688759-46688899)
chr1 (334-521)||(50011719-50011907)
chr1 (297-476)||(15456700-15456878)
chr1 (275-477)||(45370715-45370919)
chr1 (273-479)||(1834750-1834956)
chr1 (280-479)||(47677021-47677220)
chr1 (431-565)||(26991775-26991914)
chr1 (476-565)||(30627134-30627223)
chr1 (476-565)||(45467983-45468072)
chr1 (298-465)||(35718982-35719149)
chr1 (474-551)||(23082429-23082506)
chr1 (476-565)||(49650119-49650208)
chr1 (474-565)||(6597462-6597553)
chr1 (474-565)||(27163054-27163145)
chr1 (273-479)||(12705325-12705533)
chr1 (303-465)||(26991921-26992080)
chr1 (272-477)||(27163173-27163374)
chr1 (275-357)||(30627391-30627472)
chr1 (308-446)||(30796562-30796701)
chr1 (501-565)||(39092967-39093031)
chr1 (431-565)||(35718836-35718975)
chr1 (473-539)||(38790605-38790671)
chr1 (275-477)||(13004224-13004418)
chr1 (474-565)||(2356231-2356323)
chr1 (375-477)||(39092820-39092922)
chr1 (404-477)||(18898275-18898348)
chr1 (514-551)||(22767175-22767212)
chr1 (425-477)||(31437064-31437116)
chr1 (491-543)||(37586495-37586547)
chr1 (418-477)||(52898403-52898462)
chr1 (476-534)||(47675909-47675967)
chr1 (484-553)||(44343422-44343491)
chr1 (531-564)||(50011647-50011680)
[»] chr7 (29 HSPs)
chr7 (275-675)||(17503134-17503534)
chr7 (275-675)||(17549680-17550080)
chr7 (343-674)||(19735503-19735836)
chr7 (275-465)||(583824-584013)
chr7 (445-539)||(1964227-1964321)
chr7 (426-672)||(8515440-8515686)
chr7 (454-560)||(8352633-8352738)
chr7 (473-674)||(1837760-1837961)
chr7 (476-565)||(2842562-2842651)
chr7 (474-672)||(48293934-48294132)
chr7 (477-565)||(8488713-8488801)
chr7 (476-585)||(584070-584182)
chr7 (474-563)||(25173480-25173569)
chr7 (476-565)||(44592100-44592189)
chr7 (474-565)||(27399762-27399853)
chr7 (275-479)||(2842312-2842520)
chr7 (477-565)||(38974813-38974900)
chr7 (275-356)||(8515787-8515869)
chr7 (474-552)||(21294841-21294919)
chr7 (275-357)||(48293850-48293932)
chr7 (476-565)||(48557962-48558050)
chr7 (297-357)||(48557738-48557798)
chr7 (474-589)||(48767846-48767964)
chr7 (474-565)||(8055305-8055396)
chr7 (275-356)||(8488978-8489060)
chr7 (476-543)||(43786686-43786753)
chr7 (424-474)||(48767475-48767525)
chr7 (474-551)||(3641570-3641647)
chr7 (272-372)||(8352513-8352614)
[»] chr6 (12 HSPs)
chr6 (346-565)||(29465298-29465515)
chr6 (408-672)||(27753002-27753267)
chr6 (334-565)||(31766425-31766652)
chr6 (275-477)||(6811284-6811486)
chr6 (474-565)||(6812053-6812144)
chr6 (473-565)||(12919069-12919161)
chr6 (514-565)||(17096023-17096074)
chr6 (403-477)||(10373875-10373949)
chr6 (275-355)||(17096581-17096661)
chr6 (392-477)||(28188005-28188089)
chr6 (476-539)||(19687610-19687673)
chr6 (392-477)||(24326049-24326134)
[»] chr2 (30 HSPs)
chr2 (275-565)||(25749880-25750170)
chr2 (270-477)||(37847195-37847402)
chr2 (406-565)||(42029584-42029742)
chr2 (278-477)||(21848576-21848775)
chr2 (422-506)||(27957498-27957582)
chr2 (474-565)||(21848228-21848319)
chr2 (333-482)||(39446159-39446308)
chr2 (473-565)||(37456044-37456136)
chr2 (491-551)||(44059281-44059341)
chr2 (474-551)||(2968869-2968946)
chr2 (476-564)||(10624826-10624914)
chr2 (473-565)||(27559033-27559125)
chr2 (392-565)||(28967600-28967776)
chr2 (275-446)||(3703897-3704071)
chr2 (286-465)||(36749735-36749911)
chr2 (474-550)||(37847690-37847766)
chr2 (474-553)||(3703501-3703580)
chr2 (474-565)||(12671787-12671878)
chr2 (476-546)||(12863601-12863671)
chr2 (272-477)||(2969198-2969403)
chr2 (501-589)||(11916161-11916247)
chr2 (476-565)||(12184735-12184823)
chr2 (392-477)||(19140982-19141067)
chr2 (275-439)||(12016085-12016248)
chr2 (297-357)||(28967837-28967897)
chr2 (501-675)||(39446348-39446521)
chr2 (395-477)||(12671677-12671759)
chr2 (331-477)||(11916292-11916429)
chr2 (405-481)||(12184619-12184695)
chr2 (275-356)||(14332596-14332676)
[»] chr4 (36 HSPs)
chr4 (280-565)||(56397091-56397375)
chr4 (271-671)||(37450621-37451019)
chr4 (275-465)||(51175280-51175469)
chr4 (271-675)||(31767732-31768124)
chr4 (473-674)||(13678514-13678715)
chr4 (426-585)||(44991744-44991911)
chr4 (476-565)||(12191524-12191613)
chr4 (275-434)||(4711248-4711403)
chr4 (474-563)||(38068088-38068177)
chr4 (296-465)||(38068284-38068452)
chr4 (297-564)||(45832132-45832400)
chr4 (271-477)||(38067602-38067807)
chr4 (476-585)||(51175526-51175638)
chr4 (474-551)||(36904174-36904251)
chr4 (473-565)||(5744804-5744896)
chr4 (474-565)||(27064454-27064545)
chr4 (474-565)||(27085558-27085649)
chr4 (275-479)||(44991898-44992099)
chr4 (275-465)||(12191279-12191467)
chr4 (297-479)||(40445546-40445725)
chr4 (429-553)||(4711545-4711665)
chr4 (475-577)||(38168122-38168227)
chr4 (431-585)||(38068459-38068627)
chr4 (426-552)||(40445712-40445843)
chr4 (481-585)||(17058793-17058900)
chr4 (392-477)||(36622281-36622366)
chr4 (473-549)||(13665782-13665858)
chr4 (473-560)||(30482923-30483010)
chr4 (404-507)||(49551789-49551892)
chr4 (474-551)||(19853994-19854071)
chr4 (272-386)||(39718868-39718982)
chr4 (474-564)||(56228205-56228294)
chr4 (299-359)||(32409313-32409373)
chr4 (484-540)||(34929264-34929320)
chr4 (419-477)||(27064573-27064631)
chr4 (419-477)||(27085677-27085735)
[»] chr3 (36 HSPs)
chr3 (392-589)||(25701529-25701729)
chr3 (392-565)||(47142675-47142848)
chr3 (273-477)||(28131092-28131296)
chr3 (273-465)||(19610900-19611091)
chr3 (279-482)||(1559900-1560103)
chr3 (393-565)||(46981748-46981920)
chr3 (474-564)||(1559590-1559680)
chr3 (474-565)||(31833957-31834048)
chr3 (474-565)||(32552306-32552397)
chr3 (473-674)||(23059103-23059304)
chr3 (392-509)||(32721914-32722031)
chr3 (275-473)||(1292033-1292230)
chr3 (476-585)||(19611149-19611261)
chr3 (474-551)||(1151610-1151687)
chr3 (342-477)||(38585784-38585919)
chr3 (476-565)||(55222401-55222490)
chr3 (514-674)||(38585977-38586138)
chr3 (273-446)||(1151987-1152160)
chr3 (277-477)||(33428592-33428792)
chr3 (279-479)||(3935875-3936073)
chr3 (277-439)||(35540547-35540709)
chr3 (474-560)||(37526766-37526851)
chr3 (459-528)||(7325564-7325633)
chr3 (285-477)||(32551926-32552113)
chr3 (275-479)||(1292318-1292517)
chr3 (491-674)||(28131342-28131526)
chr3 (429-506)||(40242606-40242684)
chr3 (475-560)||(14903368-14903453)
chr3 (519-563)||(1294572-1294616)
chr3 (475-565)||(5992202-5992285)
chr3 (627-675)||(40243198-40243246)
chr3 (475-554)||(3935755-3935834)
chr3 (478-565)||(13778185-13778271)
chr3 (518-565)||(48098387-48098434)
chr3 (402-479)||(48098288-48098365)
chr3 (625-674)||(47142901-47142950)
[»] chr8 (22 HSPs)
chr8 (275-565)||(1581284-1581578)
chr8 (474-673)||(7176952-7177152)
chr8 (474-565)||(22800576-22800667)
chr8 (267-474)||(45251232-45251436)
chr8 (272-387)||(5423308-5423423)
chr8 (275-477)||(12796294-12796494)
chr8 (286-477)||(29637882-29638073)
chr8 (476-565)||(14523171-14523260)
chr8 (474-565)||(11989717-11989808)
chr8 (335-477)||(13281957-13282097)
chr8 (477-551)||(12795955-12796029)
chr8 (333-477)||(22800695-22800837)
chr8 (403-477)||(7177375-7177449)
chr8 (273-477)||(41437968-41438171)
chr8 (474-565)||(8693032-8693123)
chr8 (515-565)||(5423517-5423567)
chr8 (476-565)||(12532328-12532417)
chr8 (431-539)||(43976594-43976707)
chr8 (475-565)||(13282128-13282221)
chr8 (598-675)||(22800462-22800539)
chr8 (277-357)||(12532582-12532662)
chr8 (342-465)||(14523317-14523439)
[»] chr5 (19 HSPs)
chr5 (439-560)||(4898156-4898278)
chr5 (474-565)||(31066332-31066423)
chr5 (474-564)||(565353-565443)
chr5 (340-477)||(2552655-2552790)
chr5 (474-585)||(31046367-31046481)
chr5 (474-565)||(4396221-4396312)
chr5 (598-672)||(4740334-4740408)
chr5 (475-565)||(8516926-8517016)
chr5 (515-564)||(15958740-15958789)
chr5 (403-477)||(12883523-12883597)
chr5 (474-565)||(12883183-12883274)
chr5 (297-465)||(15958862-15959029)
chr5 (474-562)||(30312968-30313056)
chr5 (279-358)||(564979-565057)
chr5 (271-316)||(2552221-2552266)
chr5 (474-539)||(30350411-30350476)
chr5 (477-551)||(2553196-2553270)
chr5 (297-448)||(8517089-8517235)
chr5 (404-477)||(4395654-4395727)
[»] scaffold0086 (2 HSPs)
scaffold0086 (275-473)||(33569-33766)
scaffold0086 (476-551)||(33242-33317)
[»] scaffold0007 (1 HSPs)
scaffold0007 (333-477)||(175210-175354)
[»] scaffold0568 (1 HSPs)
scaffold0568 (481-585)||(726-833)
[»] scaffold0020 (1 HSPs)
scaffold0020 (476-553)||(11490-11567)


Alignment Details
Target: scaffold0110 (Bit Score: 359; Significance: 0; HSPs: 7)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 13246 - 13670
Alignment:
Q  1 tattgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcatttttagatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  13246 tattgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagacagaaataccaggtaattttagtattttgattcatttttagatta 13345  T
Q  101 agtgt--gtttagattatccgtgagtttgctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccataatgatttcgccaaaaacta 198  Q
    |||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  13346 agtgtgtgtttagattatccatgagtttgctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccatagtgatttcgccaaaaacta 13445  T
Q  199 catttggaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaactcgatttgattttcatcatgcactaagagcatctccaatgggagtttct 298  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13446 cattttgaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaactcgatttgattttcatcatgcactaagagcatctccaatgggagttcct 13545  T
Q  299 tacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctc 398  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||            
T  13546 tacttaacaaggaccgcttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaattatgtaaggacat-------- 13637  T
Q  399 atgggcaactaacgggtcacacgtgtaaaagaag 432  Q
     |||||||||||||||||||||||||||||||||    
T  13638 -tgggcaactaacgggtcacacgtgtaaaagaag 13670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #2
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 20983 - 21407
Alignment:
Q  1 tattgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcatttttagatta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20983 tattgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagacagaaataccaggtaattttagtattttgattcatttttagatta 21082  T
Q  101 agtgt--gtttagattatccgtgagtttgctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccataatgatttcgccaaaaacta 198  Q
    |||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21083 agtgtgtgtttagattatccatgagtttgctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccatagtgatttcgccaaaaacta 21182  T
Q  199 catttggaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaactcgatttgattttcatcatgcactaagagcatctccaatgggagtttct 298  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  21183 cattttgaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaactcgatttgattttcatcatgcactaagagcatctccaatgggagttcct 21282  T
Q  299 tacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctc 398  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||            
T  21283 tacttaacaaggaccgcttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaattatgtaaggacat-------- 21374  T
Q  399 atgggcaactaacgggtcacacgtgtaaaagaag 432  Q
     |||||||||||||||||||||||||||||||||    
T  21375 -tgggcaactaacgggtcacacgtgtaaaagaag 21407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 4 - 150
Target Start/End: Original strand, 30106 - 30254
Alignment:
Q  4 tgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcatttttagattaag- 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||     
T  30106 tgtagctcacaatttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaatattagtattttgattcgtttttagattaagt 30205  T
Q  103 -tgtgtttagattatccgtgagtttgctagaatcacgatgtgtcatagt 150  Q
     ||||||| ||||| | |||||||||  ||| ||| |||||| ||||||    
T  30206 atgtgtttggattagcagtgagtttgtcagagtcatgatgtgccatagt 30254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 598 - 715
Target Start/End: Original strand, 21924 - 22041
Alignment:
Q  598 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaagtggtttattcaatttgttttga 697  Q
    ||||||||||||||||| || |||||||||||||| ||||||||||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||    
T  21924 ttataaataagtgatgtatatatgtatggtccattgaagaagtctctgttagtggattaccattgtggatgctctaagtggtttattcaatttgttttga 22023  T
Q  698 tgtttttatggtgatgat 715  Q
    ||||||||||||||||||    
T  22024 tgtttttatggtgatgat 22041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 465 - 570
Target Start/End: Original strand, 13663 - 13769
Alignment:
Q  465 aaaagaag-taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 563  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  13663 aaaagaagctaatagattatttttatataatgatgtaaagttagtgggacctatttaaatattttccattggaatccttattagtgtattgtcattggag 13762  T
Q  564 tcgagtc 570  Q
    |||||||    
T  13763 tcgagtc 13769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #6
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 465 - 570
Target Start/End: Original strand, 21400 - 21506
Alignment:
Q  465 aaaagaag-taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 563  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  21400 aaaagaagctaatagattatttttatataatgatgtaaagttagtgggacctatttaaatattttccattggaatccttattagtgtattgtcattggag 21499  T
Q  564 tcgagtc 570  Q
    |||||||    
T  21500 tcgagtc 21506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 151 - 276
Target Start/End: Original strand, 30224 - 30349
Alignment:
Q  151 tgagtttgtcacaatcacgatgtgccataatgatttcgccaaaaactacatttggaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaact 250  Q
    ||||||||||| | ||| ||||||||||| |||||| | ||||||||||| || | |||||||||||| ||||| |||||||||||||||||||||||||    
T  30224 tgagtttgtcagagtcatgatgtgccatagtgatttaggcaaaaactacactttgcagcttcaacaaagtcacatggtgcaactgtgatttcgtcaaact 30323  T
Q  251 cgatttgattttcatcatgcactaag 276  Q
     ||| ||||| | || ||||||||||    
T  30324 tgatgtgattcttattatgcactaag 30349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 9e-72; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 275 - 512
Target Start/End: Original strand, 5939623 - 5939859
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 374  Q
    |||||||||| |||||| ||| |||||||||||||||||||| |||||||| ||| | |||||| |||||||||||||||||| |||| | |||||||      
T  5939623 agagcatctctaatgggggttccttacttaacaaggaccactccccattaaggaccccccattggaggaagaaaaaatgagtccctataaagcaacggc- 5939721  T
Q  375 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 474  Q
    ||||||| ||||||   ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  5939722 aactatacaaggaccctctctctcctgggcaactaacgggccccacgtgtaaaagaagtaataaaatatgtactggttggtcccacttgcagaagaagta 5939821  T
Q  475 ataaattatttttatataatgatgtaaagttagtggga 512  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  5939822 ataaattatttttgtataatgatgtaaagttagaggga 5939859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 272 - 565
Target Start/End: Complemental strand, 28523171 - 28522879
Alignment:
Q  272 ctaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacg 371  Q
    ||||||||||||||||| |   || |||||||||||||||| | |   | |||| ||  ||||||||||| |||||||||||||||| ||||| ||||||    
T  28523171 ctaagagcatctccaattgagattccttacttaacaaggactattctacgttaaggaacctccattgaagaaagaaaaaatgagtctttattaagcaacg 28523072  T
Q  372 gggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaa 471  Q
     | |||||||||| ||| | ||||||| | ||||||||||| | | ||||||||||||||||||||||||||||| |  ||| |  ||||||||||||||    
T  28523071 agcaactatataatgacct-ctctctcttaggcaactaacgagccccacgtgtaaaagaagtaataaaatatgtactaattgatatcacttgcaaaagaa 28522973  T
Q  472 gtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||||||||||  |||||||| |||||||| || |  ||||||||  | ||| |||| |||||||||||||||||||||||||||||||    
T  28522972 gtaataaattatttttgcataatgatataaagttaatgtggcctatttaaaaactttgcattagagtccttattagtgtattgtcattggagtc 28522879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 423 - 565
Target Start/End: Complemental strand, 46688899 - 46688759
Alignment:
Q  423 gtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaag 522  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  46688899 gtaaaagaagtaataaa-tatgtactggttggtcctacttgcaaaagaagtaataaattatttttgtataatgatgtaaagttagtggg-cctatttaag 46688802  T
Q  523 tattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    || ||| |||||||||| |||||||||||||||||||||||||    
T  46688801 tacttttcattggagtcattattagtgtattgtcattggagtc 46688759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 334 - 521
Target Start/End: Complemental strand, 50011907 - 50011719
Alignment:
Q  334 cattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagt 433  Q
    |||||||| |||||||||||||||| ||||| |||||    ||||||||||||||    |||||||||| ||||||||||||| |||| |||||||||||    
T  50011907 cattgaagaaagaaaaaatgagtctttattaagcaacatacaactatataaggac----tctctcatggacaactaacgggtcgcacgcgtaaaagaagt 50011812  T
Q  434 aataaaatatgta-----ttggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaa 521  Q
    |||||||||||||     ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| | |||||||    
T  50011811 aataaaatatgtactggtttggttggtaccacttgcaaaagaagtaataaattatttttgtataatgatgtaaagttagcggggtatatttaa 50011719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 297 - 476
Target Start/End: Original strand, 15456700 - 15456878
Alignment:
Q  297 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctc 396  Q
    |||||||||||||||||||| ||| |||| ||| | ||||||||||| |||||| |||||| |||||| ||||||   ||||||||||||||   |||||    
T  15456700 cttacttaacaaggaccactccccgttaaggactc-ccattgaaggaggaaaaattgagtccctattaagcaacgaacaactatataaggaccccctctc 15456798  T
Q  397 tcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaat 476  Q
    || |||| ||||||| |||| ||| | ||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  15456799 tcctgggtaactaactggtcccacatttaaaagaagtaataaaatatgtattagttggtcccacttgcaaaagaggtaat 15456878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 275 - 477
Target Start/End: Original strand, 45370715 - 45370919
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 374  Q
    ||||||||||||||||||| | |||| ||| |||||| |||| ||| |||| ||| |||||||| |||||||||||||||||||| |||| | |||        
T  45370715 agagcatctccaatgggaggtccttatttaccaaggatcactccccgttaaggactctccattggaggaagaaaaaatgagtctccattaaggaacatat 45370814  T
Q  375 aactatataagga-cat-gctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaag 472  Q
    |||| |||||||| |||  ||||||| | ||||||||||||||| ||||| |||||||||||||||||| |||| |   | ||||||||| | |||||||    
T  45370815 aactgtataaggatcatctctctctcctaggcaactaacgggtcccacgtttaaaagaagtaataaaatttgtactatgttgtcccacttactaaagaag 45370914  T
Q  473 taata 477  Q
    |||||    
T  45370915 taata 45370919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 273 - 479
Target Start/End: Original strand, 1834750 - 1834956
Alignment:
Q  273 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgg 372  Q
    |||||||||||| ||||||   | |||||||||||||||||||| ||| |||| ||| |||||||  |||||||||||| ||||| |  ||| | |||||    
T  1834750 taagagcatctctaatggggagtccttacttaacaaggaccactccccgttaaggaccctccattagaggaagaaaaaacgagtccccgttaaggaacgg 1834849  T
Q  373 ggaactatataagga-catgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaaga 470  Q
      ||||||||||||| ||| ||||||||| || |||||||||||| ||||| ||||| |||||||||||  |||| |  ||||||||||||||| ||||     
T  1834850 acaactatataaggatcat-ctctctcattggtaactaacgggtcccacgtttaaaa-aagtaataaaacgtgtactatttggtcccacttgcataaagg 1834947  T
Q  471 agtaataaa 479  Q
    |||||||||    
T  1834948 agtaataaa 1834956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 280 - 479
Target Start/End: Complemental strand, 47677220 - 47677021
Alignment:
Q  280 atctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaacta 379  Q
    |||| ||||||||| | ||||||||||||||| |||| ||  ||||  || |||||||| ||||||||||||||||||| | ||| | |||||  |||||    
T  47677220 atcttcaatgggaggtccttacttaacaaggatcactccctgttaagaaccctccattggaggaagaaaaaatgagtctatgttaaggaacggtcaacta 47677121  T
Q  380 tataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagtaataa 478  Q
    |||||||||   ||||||| |||| ||||||||| || ||||| ||||| | |||||||||| |||| |  |||||| || ||||| |||||||||||||    
T  47677120 tataaggactctctctctcttgggtaactaacggatcccacgtttaaaa-aggtaataaaatgtgtactatttggtctcatttgcataaagaagtaataa 47677022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 431 - 565
Target Start/End: Complemental strand, 26991914 - 26991775
Alignment:
Q  431 agtaataaaatatgtattggttggtcccacttg-caaaagaagtaa----taaattatttttatataatgatgtaaagttagtgggatctatttaagtat 525  Q
    ||||||||||| |||| |  |||||||||||||  ||||| |||||    |||||||||||| | ||||||||||||| ||||| ||  ||||||||||     
T  26991914 agtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaatatgtaaattatttttgtttaatgatgtaaagatagtgagacatatttaagtac 26991815  T
Q  526 tttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||| |||||||||||||||||||||||||| |||||||||    
T  26991814 ttttcattggagtccttattagtgtattgttattggagtc 26991775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 476 - 565
Target Start/End: Complemental strand, 30627223 - 30627134
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||||| | ||||||||||||| ||||||||  |||||||||||||| |||| ||||| |||||| ||||||||||||||||||    
T  30627223 taaattatttttgtttaatgatgtaaagatagtgggacatatttaagtatttttcatttgagtctttattaatgtattgtcattggagtc 30627134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 476 - 565
Target Start/End: Complemental strand, 45468072 - 45467983
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||||| | ||||||||||||| ||||||||  ||||||| |||||| |||||||||| |||| ||||||||||||||||||||    
T  45468072 taaattatttttgtttaatgatgtaaagatagtgggacatatttaaatatttttcattggagtcattatcagtgtattgtcattggagtc 45467983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 298 - 465
Target Start/End: Complemental strand, 35719149 - 35718982
Alignment:
Q  298 ttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggac---atgctc 394  Q
    ||||||||||||||||||| ||| |||| ||| |||||||| |||||||||||||||||| |||||| | |||    ||||||||||||||   || |||    
T  35719149 ttacttaacaaggaccactccccgttaaggaccctccattggaggaagaaaaaatgagtcactattaaggaacatacaactatataaggaccctat-ctc 35719051  T
Q  395 tctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 465  Q
    |||| |||| |||||||||||| ||||| ||||| |||||| ||||| |||| |  |||||||||||||||    
T  35719050 tctcctgggtaactaacgggtcccacgt-taaaa-aagtaacaaaatgtgtactacttggtcccacttgca 35718982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 23082429 - 23082506
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 551  Q
    |||||||||||||| | ||||| |||||||||||||   |||||||||||||||| ||||||||||||||||||||||    
T  23082429 aataaattatttttgtttaatgttgtaaagttagtgaagtctatttaagtatttttcattggagtccttattagtgta 23082506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 476 - 565
Target Start/End: Original strand, 49650119 - 49650208
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| ||||||||||||||||| |||||||| |||||||||    
T  49650119 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtccttattaatgtattgttattggagtc 49650208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 474 - 565
Target Start/End: Original strand, 6597462 - 6597553
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||| | |||| |||||||||||||||||||||  | |||||||| |||| | ||||||||||||| |||||||| |||||||||||||    
T  6597462 aataaatcacttttgtataatgatgtaaagttagtgtaacctatttaaatattattcattggagtccttgttagtgtactgtcattggagtc 6597553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 474 - 565
Target Start/End: Complemental strand, 27163145 - 27163054
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||| |||| |||||| ||||||||||||||  | ||||||||| ||||| ||||||||||  | ||||||||||||||||||||||    
T  27163145 aataaattacttttgtataattatgtaaagttagtgtcacctatttaagcatttttcattggagtctctgttagtgtattgtcattggagtc 27163054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 273 - 479
Target Start/End: Complemental strand, 12705533 - 12705325
Alignment:
Q  273 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgg 372  Q
    ||||||||||| ||||||| | |  ||||||||||| ||||||| ||| |||| ||| |||||||| ||||||||||||| |||| |  ||| | |||      
T  12705533 taagagcatcttcaatggggggtcattacttaacaatgaccactccccgttaaggaccctccattggaggaagaaaaaataagtccccgttaaggaacaa 12705434  T
Q  373 ggaactatataagga--catgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaag 469  Q
    | ||||||||||| |  |   ||||||| ||||||||||| ||||| ||||| ||||| |||||||||||| |||| |  |||||| |||||||| ||||    
T  12705433 gcaactatataagaaccctctctctctcttgggcaactaatgggtcccacgtttaaaa-aagtaataaaatgtgtactacttggtctcacttgcataaag 12705335  T
Q  470 aagtaataaa 479  Q
     |||||||||    
T  12705334 gagtaataaa 12705325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 303 - 465
Target Start/End: Complemental strand, 26992080 - 26991921
Alignment:
Q  303 taacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgg 402  Q
    |||||||||||| || || |||| ||| || |||||||||||||||||||||||| |  |||   ||| |  ||||||||||||||   ||||||| |||    
T  26992080 taacaaggaccattttccgttaaggacccttcattgaaggaagaaaaaatgagtcccggttaaagaacagacaactatataaggacc--ctctctcctgg 26991983  T
Q  403 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 465  Q
      |||||||||| | ||||| ||||| |||||||||||| ||||||  |||||||||||||||    
T  26991982 ataactaacgggcctcacgtttaaaa-aagtaataaaatgtgtattacttggtcccacttgca 26991921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 272 - 477
Target Start/End: Complemental strand, 27163374 - 27163173
Alignment:
Q  272 ctaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacg 371  Q
    |||||| ||||||||||||| ||||||||||||||||||||| ||     |||| ||| | |||||| ||||||||||| |||||   ||||| | |||     
T  27163374 ctaagatcatctccaatgggggtttcttacttaacaaggaccgctcattgttaaggaccc-ccattggaggaagaaaaa-tgagtacatattaagtaaca 27163277  T
Q  372 gggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaa 471  Q
       ||||||||||||||   |||| || ||  |||||||| |||| ||||| |||||||||||||||||||| ||   |||||| |||||| ||||||||    
T  27163276 tacaactatataaggact--ctctttcctgaacaactaacaggtctcacgtttaaaagaagtaataaaatatatacaagttggttccactttcaaaagaa 27163179  T
Q  472 gtaata 477  Q
    ||||||    
T  27163178 gtaata 27163173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 275 - 357
Target Start/End: Complemental strand, 30627472 - 30627391
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 357  Q
    ||||||||||||||||| ||  |||||||||||||||||||| ||| |||| ||| |||||||| || |||||||||||||||    
T  30627472 agagcatctccaatgggggtc-cttacttaacaaggaccactccccgttaaggaccctccattggagaaagaaaaaatgagtc 30627391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 308 - 446
Target Start/End: Original strand, 30796562 - 30796701
Alignment:
Q  308 aggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctc--tcatgggca 405  Q
    |||| |||||||| |||| ||| |||||||||| |||||||||||||||| |||||| | |||    |||||||||||||  | |||||  ||||| | |    
T  30796562 aggatcacttcccgttaaggaccctccattgaaagaagaaaaaatgagtccctattaaggaacaaacaactatataaggatcttctctctttcatgagta 30796661  T
Q  406 actaacgggtcacacgtgtaaaagaagtaataaaatatgta 446  Q
    ||||||||||| ||||| ||||| |||||||||||| ||||    
T  30796662 actaacgggtctcacgtttaaaa-aagtaataaaatgtgta 30796701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 501 - 565
Target Start/End: Original strand, 39092967 - 39093031
Alignment:
Q  501 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||||||  |||||||||| |||  |||||||||||||||| ||||||||||||||||||    
T  39092967 aagttagtgggacatatttaagtacttttaattggagtccttattattgtattgtcattggagtc 39093031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 431 - 565
Target Start/End: Complemental strand, 35718975 - 35718836
Alignment:
Q  431 agtaataaaatatgtattggttggtcccacttgcaaaaga-agtaa----taaattatttttatataatgatgtaaagttagtgggatctatttaagtat 525  Q
    ||||||||||| |||| |  ||||||||||||| |||| | |||||    |||||||||||| | |||| | |||||| ||||| ||  ||||||||||     
T  35718975 agtaataaaatgtgtactacttggtcccacttgtaaaaaagagtaataagtaaattatttttgtttaataaagtaaagatagtgagacatatttaagtac 35718876  T
Q  526 tttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||| |||||| |||||| ||||||||||| ||||||||||    
T  35718875 ttttcattggggtccttgttagtgtattgccattggagtc 35718836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 473 - 539
Target Start/End: Complemental strand, 38790671 - 38790605
Alignment:
Q  473 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 539  Q
    |||||||||| |||| ||||||||||||||||||||| ||  |||||||| ||||| ||||||||||    
T  38790671 taataaattacttttgtataatgatgtaaagttagtgagacttatttaagcatttttcattggagtc 38790605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 275 - 477
Target Start/End: Complemental strand, 13004418 - 13004224
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 374  Q
    |||||||||  |||||||| | ||||||||||||  |||||| ||  |||| |||   |||||  |||||||||||||||||| |  |||   ||||||     
T  13004418 agagcatctttaatgggaggtccttacttaacaaataccactccctgttaaggacctcccattcgaggaagaaaaaatgagtccccgttaaagaacgggt 13004319  T
Q  375 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 474  Q
    ||||||||||| || | |||||||        |||| ||||| ||||| ||||||||||||| ||||||||| |   ||||||||||| |||||||||||    
T  13004318 aactatataagaaccttctctctc--------ctaatgggtcccacgtttaaaagaagtaatcaaatatgtactatatggtcccacttacaaaagaagta 13004227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 565
Target Start/End: Original strand, 2356231 - 2356323
Alignment:
Q  474 aataaattatttt-tatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||||||| |||||||||||||||||| ||||| |||| ||||| || |||  |||||||||   |||| |||||||| |||||||||    
T  2356231 aataaattattttttatataatgatgtaaagtcagtggaatctttttaaatactttttattggagtctcaattaatgtattgttattggagtc 2356323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 375 - 477
Target Start/End: Original strand, 39092820 - 39092922
Alignment:
Q  375 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 474  Q
    |||||||||||| ||| || | || | |||||||||||| |  ||||| |||||||| ||||||||||| || | ||||||| ||||||||||  |||||    
T  39092820 aactatataagggcattctttttcctaggcaactaacggatttcacgtttaaaagaaataataaaatatatactagttggtctcacttgcaaacaaagta 39092919  T
Q  475 ata 477  Q
    |||    
T  39092920 ata 39092922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 404 - 477
Target Start/End: Complemental strand, 18898348 - 18898275
Alignment:
Q  404 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    ||||||||| ||| |||||  ||||||||||||||||||||||   |||| |||||||| ||||| ||||||||    
T  18898348 caactaacgagtctcacgttcaaaagaagtaataaaatatgtacaagttgatcccactttcaaaataagtaata 18898275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 514 - 551
Target Start/End: Original strand, 22767175 - 22767212
Alignment:
Q  514 ctatttaagtattttccattggagtccttattagtgta 551  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  22767175 ctatttaagtatttttcattggagtccttattagtgta 22767212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 425 - 477
Target Start/End: Original strand, 31437064 - 31437116
Alignment:
Q  425 aaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    |||| ||||||||||||||||||  |||||||| |||| ||||||||||||||    
T  31437064 aaaataagtaataaaatatgtataagttggtcctactttcaaaagaagtaata 31437116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 37586547 - 37586495
Alignment:
Q  491 taatgatgtaaagttagtgggatctatttaagtattttccattggagtcctta 543  Q
    |||||||||||||||| || ||  |||||||||||||| ||||||||||||||    
T  37586547 taatgatgtaaagttaatgagaattatttaagtatttttcattggagtcctta 37586495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 418 - 477
Target Start/End: Original strand, 52898403 - 52898462
Alignment:
Q  418 cacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    ||||| ||||||||||||||||||||||||  ||||||| ||||| ||||| || |||||    
T  52898403 cacgtttaaaagaagtaataaaatatgtataagttggtcacactttcaaaataaataata 52898462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 476 - 534
Target Start/End: Complemental strand, 47675967 - 47675909
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattg 534  Q
    ||||||| |||| | ||||||||||||| ||||||||  |||||||||||||| |||||    
T  47675967 taaattacttttgtttaatgatgtaaagatagtgggacatatttaagtatttttcattg 47675909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 484 - 553
Target Start/End: Original strand, 44343422 - 44343491
Alignment:
Q  484 ttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 553  Q
    |||| ||||||| || ||||||| || ||  |||||||||||||| |||||||||||||| |||| ||||    
T  44343422 ttttgtataatgttgcaaagttaatgagacatatttaagtatttttcattggagtccttactagtatatt 44343491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 564
Target Start/End: Complemental strand, 50011680 - 50011647
Alignment:
Q  531 attggagtccttattagtgtattgtcattggagt 564  Q
    |||||||||||||||| |||||||||||||||||    
T  50011680 attggagtccttattattgtattgtcattggagt 50011647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 9e-66; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 275 - 675
Target Start/End: Complemental strand, 17503534 - 17503134
Alignment:
Q  275 agagcatctccaatg-ggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaa-tgagtctctattatgcaacgg 372  Q
    ||||||||||||||| || ||| |||||||||||||||||||| ||| |||| ||   ||||||| |||||||||||| | ||||  ||||| |||||      
T  17503534 agagcatctccaatgtggggttccttacttaacaaggaccactccccgttaaggattttccattggaggaagaaaaaaataagtccatattaagcaacaa 17503435  T
Q  373 ggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaag 472  Q
    | ||||||||||| ||   ||||||| ||  |||| |||||  | |||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  17503434 gcaactatataagaact--ctctctcttgatcaac-aacggaccccacgtgtaaaagaagtaataaactatgtactggttggtcccacttgcaaaagaag 17503338  T
Q  473 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 569  Q
    ||||||||||||||| |||||| ||||||||||| |||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||   || |    
T  17503337 taataaattatttttgtataattatgtaaagttactgggacttatttaagtattttttattggagtccttattagtgtattgtcattggagtcattgaat 17503238  T
Q  570 ctttaatagctactttcattnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgc 669  Q
    | ||||||  || |||||||        ||||||||||||||||| | || ||  |||||||||||||||||  ||||||| ||||  |||| |||||||    
T  17503237 ccttaatatgtaatttcatt--aaaaaattataaataagtgatgtgttcacgtggggtccatttaagaagtccttattagtggactgtcattctggatgc 17503140  T
Q  670 tctaag 675  Q
    | ||||    
T  17503139 tttaag 17503134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 275 - 675
Target Start/End: Original strand, 17549680 - 17550080
Alignment:
Q  275 agagcatctccaatg-ggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaa-tgagtctctattatgcaacgg 372  Q
    ||||||||||||||| || ||| |||||||||||||||||||| ||| |||| ||   ||||||| |||||||||||| | ||||  ||||| |||||      
T  17549680 agagcatctccaatgtggggttccttacttaacaaggaccactccccgttaaggattttccattggaggaagaaaaaaataagtccatattaagcaacaa 17549779  T
Q  373 ggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaag 472  Q
    | ||||||||||| ||   ||||||| ||  |||| |||||  | |||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  17549780 gcaactatataagaact--ctctctcttgatcaac-aacggaccccacgtgtaaaagaagtaataaactatgtactggttggtcccacttgcaaaagaag 17549876  T
Q  473 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 569  Q
    ||||||||||||||| |||||| ||||||||||| |||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||   || |    
T  17549877 taataaattatttttgtataattatgtaaagttactgggacttatttaagtattttttattggagtccttattagtgtattgtcattggagtcattgaat 17549976  T
Q  570 ctttaatagctactttcattnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgc 669  Q
    | ||||||  || |||||||        ||||||||||||||||| | || ||  |||||||||||||||||  ||||||| ||||  |||| |||||||    
T  17549977 ccttaatatgtaatttcatt--aaaaaattataaataagtgatgtgttcacgtggggtccatttaagaagtccttattagtggactgtcattctggatgc 17550074  T
Q  670 tctaag 675  Q
    | ||||    
T  17550075 tttaag 17550080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 343 - 674
Target Start/End: Original strand, 19735503 - 19735836
Alignment:
Q  343 aagaaaaaatgagtctctattatgcaacggggaactatataagga-catgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaat 441  Q
    |||||||||||||||||||||| |||||  | ||||||||||||| ||| |||||||||||||||||||||||||  |||||||||||||||||||||||    
T  19735503 aagaaaaaatgagtctctattaagcaacatgcaactatataaggatcat-ctctctcatgggcaactaacgggtccgacgtgtaaaagaagtaataaaat 19735601  T
Q  442 atgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtcct 541  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||| ||||||||| ||||||||||| || ||||||||||| |||  |||||| ||||    
T  19735602 atgtactggttggtctcacttgtaaaagaagtaataaattatttttgtataatgatataaagttagtgagacctatttaagtactttttattggattcct 19735701  T
Q  542 tattagtgtattgtcattggag---tcgagtctttaatagctactttcattnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaa 638  Q
    ||||| | | |||| |||| ||   |  |||| ||||||  |||||| |||        | |||||||| | |||| |||| ||  |||||||||||| |    
T  19735702 tattaatttcttgttattgaagacattaagtccttaatatgtacttttattaaaaaaaatcataaataaattatgtgtacacgt-gggtccatttaagga 19735800  T
Q  639 gtctctattagtagactaccattatggatgctctaa 674  Q
    |||||||||||| |||||||||| ||||| ||||||    
T  19735801 gtctctattagtggactaccattgtggatactctaa 19735836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 275 - 465
Target Start/End: Original strand, 583824 - 584013
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 374  Q
    ||||||||||||||||| | | |||||||||||||||||| | ||| |||| ||| |||||||| |||||||||||||||||| |  ||| | ||||||     
T  583824 agagcatctccaatggggggtccttacttaacaaggaccaatccccgttaaggaccctccattggaggaagaaaaaatgagtcccccttaaggaacgggc 583923  T
Q  375 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 465  Q
    ||||||||||||||   ||||||| |||| |||||||||||| ||||| ||||| ||||||||||||||||| |  |||||||||||||||    
T  583924 aactatataaggaccctctctctcctgggtaactaacgggtcccacgtttaaaa-aagtaataaaatatgtactacttggtcccacttgca 584013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 445 - 539
Target Start/End: Complemental strand, 1964321 - 1964227
Alignment:
Q  445 tattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 539  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  |||||||||    
T  1964321 tattggttggtcacacttgtaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaaatactttttattggagtc 1964227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 426 - 672
Target Start/End: Complemental strand, 8515686 - 8515440
Alignment:
Q  426 aaagaagtaataaaatatgtattggttggtcccacttgcaaaa-gaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagta 524  Q
    |||| ||||||||||| ||||||  ||||||||||||| |||| | |||   ||||||||||| | |||||||||||||  |||||||  ||||||||||    
T  8515686 aaaggagtaataaaatgtgtattacttggtcccacttgtaaaaaggagtggaaaattatttttgtttaatgatgtaaagacagtgggacatatttaagta 8515587  T
Q  525 ttttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcattnnnnnnnnttataaataagtgatgtttacatg 621  Q
    ||||  ||| |||||||||||||||||||| ||||||||||   || || ||||||| |||||| |||        ||||||||||||||||| | || |    
T  8515586 ttttttattcgagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttatt---aaaaattataaataagtgatgtgt-cacg 8515491  T
Q  622 tatggtccatttaagaagtctctattagtagactaccattatggatgctct 672  Q
    |  |||||||||||||||||  ||||||   ||||||||| ||||||||||    
T  8515490 tggggtccatttaagaagtccttattagagaactaccattgtggatgctct 8515440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 454 - 560
Target Start/End: Original strand, 8352633 - 8352738
Alignment:
Q  454 gtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 553  Q
    |||||| || ||||||||||||||| || ||||| | ||||||||||||||||||| ||  |||||||||||||| ||||| ||||||||||||||||||    
T  8352633 gtcccattttcaaaagaagtaataattttttttttt-taatgatgtaaagttagtgagacttatttaagtatttttcattgaagtccttattagtgtatt 8352731  T
Q  554 gtcattg 560  Q
    |||||||    
T  8352732 gtcattg 8352738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 473 - 674
Target Start/End: Original strand, 1837760 - 1837961
Alignment:
Q  473 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 569  Q
    |||||||||| |||| | |||||||| ||||||||||||   |||||||||| |||  ||| |||||||||||||||||||||||||||||||   ||||    
T  1837760 taataaattacttttgtttaatgatgcaaagttagtggggcatatttaagtactttttatttgagtccttattagtgtattgtcattggagtcattgagt 1837859  T
Q  570 ctttaatagctactttcattnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgc 669  Q
    ||||||||  |||||| |||        |||||||||||||| || || | ||  |||||||||||| |||||||||||    |||||||||||||||||    
T  1837860 ctttaataagtacttttatt--aatatattataaataagtgacgtgta-acgtggggtccatttaaggagtctctattaaggaactaccattatggatgc 1837956  T
Q  670 tctaa 674  Q
    |||||    
T  1837957 tctaa 1837961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 476 - 565
Target Start/End: Original strand, 2842562 - 2842651
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||||| | |||||||||| || ||||||||  ||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  2842562 taaattatttttgtttaatgatgtacagatagtgggacatatttaaatatttttcattggagtccttattagtgtattgtcattggagtc 2842651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 474 - 672
Target Start/End: Complemental strand, 48294132 - 48293934
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 570  Q
    |||||||||||||| | |||||||||||||||||||||| |||||||  || ||| |||||||||||||||||||||| |  ||||||||||   |||||    
T  48294132 aataaattatttttgtttaatgatgtaaagttagtgggacctatttagatactttacattggagtccttattagtgtacttccattggagtcaatgagtc 48294033  T
Q  571 tttaatagctactttcattnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgct 670  Q
    |||||||  |||||| |||        ||||||||||||||||| || | | | |||||||||||| ||||||| |||    ||||||||| ||||||||    
T  48294032 tttaatatgtacttttatt--aaaatattataaataagtgatgtgta-acggaaggtccatttaaggagtctctgttaaggaactaccattctggatgct 48293936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 477 - 565
Target Start/End: Complemental strand, 8488801 - 8488713
Alignment:
Q  477 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||||| | ||||||||||||| ||||||||  ||||||||||||||  |||| ||||||||||||||||||| ||||||||||    
T  8488801 aaattatttttgtttaatgatgtaaagatagtgggacatatttaagtattttttattgaagtccttattagtgtattgccattggagtc 8488713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 476 - 585
Target Start/End: Original strand, 584070 - 584182
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctt 572  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| |||||||||| || ||||||||||| ||||||||||   ||||| |    
T  584070 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttcattggagtctttgttagtgtattgccattggagtcattgagtcct 584169  T
Q  573 taatagctacttt 585  Q
    |||||| ||||||    
T  584170 taatagatacttt 584182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 474 - 563
Target Start/End: Original strand, 25173480 - 25173569
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 563  Q
    ||||||||| |||| |||||||||||||| |||||| || ||||||||||| ||| |||| |||||  | ||||||||||||||||||||    
T  25173480 aataaattacttttgtataatgatgtaaaattagtgagacctatttaagtacttttcatttgagtcactgttagtgtattgtcattggag 25173569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 476 - 565
Target Start/End: Original strand, 44592100 - 44592189
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||| || | ||||||||||||| || |||||  |||||||||| ||| |||| ||||||||||||||||||||| |||||||||    
T  44592100 taaattattgttgtttaatgatgtaaagataatgggacatatttaagtacttttcattagagtccttattagtgtattgttattggagtc 44592189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 474 - 565
Target Start/End: Original strand, 27399762 - 27399853
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||| ||||  |||||||||||||| |||||| | |||||||| || ||| ||||||||||  | ||||||||||||||||||||||    
T  27399762 aataaattacttttgcataatgatgtaaaggtagtggaacctatttaattacttttcattggagtcaatgttagtgtattgtcattggagtc 27399853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 275 - 479
Target Start/End: Original strand, 2842312 - 2842520
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 374  Q
    ||||| ||||||||||| | |  |||||||||| ||| || | ||| |||| ||| |||||||| | |||||||||||||||| || ||| | |||||      
T  2842312 agagcctctccaatgggggatctttacttaacagggatcattccccgttaaggaccctccattggaagaagaaaaaatgagtccctgttaaggaacggac 2842411  T
Q  375 aactatataaggacat--gctctctcatgggcaactaacgggtcacacgtgtaaaagaa-gtaataaaatatgtattggttggtcccacttgca-aaaga 470  Q
    |||||||||||||  |   ||||||| |  | || ||||||||| ||||| ||||| || ||||||||||||||| |  ||||||||||||||| ||||     
T  2842412 aactatataaggatcttctctctctcctaagtaattaacgggtcccacgtttaaaaaaaggtaataaaatatgtactacttggtcccacttgcataaagg 2842511  T
Q  471 agtaataaa 479  Q
    |||||||||    
T  2842512 agtaataaa 2842520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 477 - 565
Target Start/End: Complemental strand, 38974900 - 38974813
Alignment:
Q  477 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||||| | ||||||||||| |||||||||  ||||||||||| ||| | || ||||||||||||||||| | |||||||||||    
T  38974900 aaattatttttgtttaatgatgtaa-gttagtggggcctatttaagtacttttctttagagtccttattagtgtactctcattggagtc 38974813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 8515869 - 8515787
Alignment:
Q  275 agagcatctccaatgggagtttcttactt-aacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagt 356  Q
    ||||||||||||||||| | | ||||||| ||||||||| ||| ||| |||| ||| |||||||| |||||||||||||||||    
T  8515869 agagcatctccaatggggggtccttactttaacaaggactactccccgttaaggactctccattggaggaagaaaaaatgagt 8515787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 474 - 552
Target Start/End: Original strand, 21294841 - 21294919
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtat 552  Q
    |||||||||||| | | |||||||||||||||||| |||  ||||||| ||||||  ||||||||| ||||||||||||    
T  21294841 aataaattatttgtgtttaatgatgtaaagttagtaggacatatttaaatatttttaattggagtctttattagtgtat 21294919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 275 - 357
Target Start/End: Complemental strand, 48293932 - 48293850
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 357  Q
    ||||||||||||||| ||| | |||||| ||||||||||||| ||| |||| ||  |||||||| ||||||||||||| ||||    
T  48293932 agagcatctccaatgagaggtccttactaaacaaggaccactccccgttaaggatcctccattggaggaagaaaaaataagtc 48293850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 476 - 565
Target Start/End: Original strand, 48557962 - 48558050
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||||| |  |||||||||||| ||||| ||| |||||||||| ||| ||||||| || |||||| |||||| |||||||||||    
T  48557962 taaattatttttgttcaatgatgtaaagatagtgcgat-tatttaagtacttttcattggactcattattaatgtattctcattggagtc 48558050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 48557738 - 48557798
Alignment:
Q  297 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 357  Q
    ||||||||||||||| |||| |||||||| ||| || ||||| ||||||||||||||||||    
T  48557738 cttacttaacaaggatcactccccattaaggacccttcattggaggaagaaaaaatgagtc 48557798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 589
Target Start/End: Original strand, 48767846 - 48767964
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 570  Q
    |||| |||| |||| ||||||||||||||||||||| ||  |||||||| | ||| ||||||||||| | || |||||||  ||||||||||   |||||    
T  48767846 aatatattacttttgtataatgatgtaaagttagtgagacatatttaagcacttttcattggagtccctgttggtgtattaccattggagtcattgagtc 48767945  T
Q  571 tttaatagctactttcatt 589  Q
     |||||||  |||||||||    
T  48767946 cttaataggaactttcatt 48767964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 474 - 565
Target Start/End: Complemental strand, 8055396 - 8055305
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||| |||||| ||||||||||||||||||| || ||||||||  | |||  ||   | ||||| ||||||||||||||||||||||    
T  8055396 aataaattacttttatgtaatgatgtaaagttagtgagacctatttaatcactttttatcatattccttgttagtgtattgtcattggagtc 8055305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 8489060 - 8488978
Alignment:
Q  275 agagcatctccaatgggagtttcttactt-aacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagt 356  Q
    ||||||||||||||||| | | ||||||| ||||||||| ||| ||  |||| ||| |||||||| |||||||||||||||||    
T  8489060 agagcatctccaatggggggtccttactttaacaaggactactccctgttaaggactctccattggaggaagaaaaaatgagt 8488978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 476 - 543
Target Start/End: Original strand, 43786686 - 43786753
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtcctta 543  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| | ||||||||||||    
T  43786686 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtacttttctttggagtcctta 43786753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 424 - 474
Target Start/End: Original strand, 48767475 - 48767525
Alignment:
Q  424 taaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 474  Q
    |||||||||||||||||||||||   ||||||||||||| | |||||||||    
T  48767475 taaaagaagtaataaaatatgtacaagttggtcccactttcgaaagaagta 48767525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 3641570 - 3641647
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 551  Q
    |||||||||||||| | ||||| | ||| ||||||||| | |||||||||| |||  |||| |||| |||||||||||    
T  3641570 aataaattatttttgtttaatgctataatgttagtggggtttatttaagtacttttaattgaagtctttattagtgta 3641647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 8352513 - 8352614
Alignment:
Q  272 ctaagagcatctccaatgggagt-ttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaac 370  Q
    |||||||||||| ||||||| |  |||||||||||||| || |||||||  ||||  || || ||||| |  ||||||||||||||| |||||| |||||    
T  8352513 ctaagagcatcttcaatggggggattcttacttaacaatgatcacttcctgttaagaacccttcattggattaagaaaaaatgagtccctattaagcaac 8352612  T
Q  371 gg 372  Q
    ||    
T  8352613 gg 8352614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 3e-59; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 346 - 565
Target Start/End: Complemental strand, 29465515 - 29465298
Alignment:
Q  346 aaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgt 445  Q
    ||||||||||||||| ||| |||||| | ||||||||||||||   ||||||||||||||||||||||| | |||||||||||||||| |||||||||||    
T  29465515 aaaaaatgagtctctgttaagcaacgagcaactatataaggact--ctctctcatgggcaactaacgggcctcacgtgtaaaagaagtgataaaatatgt 29465418  T
Q  446 attggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttatt 545  Q
    | |||||||||  |||| |||||||| ||||||| || |||| |||||||||||||| |||||| |||||||||||| ||||| |||||||||| |||||    
T  29465417 actggttggtctaacttacaaaagaaataataaactaattttgtataatgatgtaaacttagtgagatctatttaagaatttttcattggagtcattatt 29465318  T
Q  546 agtgtattgtcattggagtc 565  Q
    |||| ||||||||| |||||    
T  29465317 agtgaattgtcatttgagtc 29465298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 408 - 672
Target Start/End: Complemental strand, 27753267 - 27753002
Alignment:
Q  408 taacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttag 507  Q
    |||||| || ||||| ||||||||||||||||||||||| |  ||| || ||||||||||||||||||||||||| |||| | ||||| |||||||||||    
T  27753267 taacggatctcacgtttaaaagaagtaataaaatatgtactatttgatctcacttgcaaaagaagtaataaattagttttgtttaatgttgtaaagttag 27753168  T
Q  508 tgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcattnnnnnnnnttataaa 604  Q
    |||||  |||||||||| ||| |||| |||||||||||||||||||| |||| |||||   || || ||||||| |||||| |||        |||||||    
T  27753167 tgggacttatttaagtacttttcatttgagtccttattagtgtattgacatttgagtcattgaatccttaataggtacttttatt--aaaaaattataaa 27753070  T
Q  605 taagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctct 672  Q
    |||||||| | |||||||  | || ||||||| |||||||||||||||||||||| |||| |||||||    
T  27753069 taagtgatatgtacatgtgagatctatttaaggagtctctattagtagactaccactatgaatgctct 27753002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 334 - 565
Target Start/End: Complemental strand, 31766652 - 31766425
Alignment:
Q  334 cattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagt 433  Q
    |||| ||| ||||||||||||||| | |||| |||||    |||||||||||||  | |||||||||||| ||| |||||||  || |||||||||||||    
T  31766652 cattaaagaaagaaaaaatgagtc-caattaagcaacaaacaactatataagga--ttctctctcatgggaaaccaacgggttccatgtgtaaaagaagt 31766556  T
Q  434 aataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccatt 533  Q
    |||||||||||||  |||| ||| ||||| ||||| |||| |||||| |||||| |||||| ||||||||||||||||||||||||||||| | |  |||    
T  31766555 aataaaatatgtacgggttagtctcacttacaaaataagttataaataatttttgtataataatgtaaagttagtgggatctatttaagtactctttatt 31766456  T
Q  534 ggagtccttattagtgtattgtcattggagtc 565  Q
    ||||| |||||||||||||||||||| |||||    
T  31766455 ggagt-cttattagtgtattgtcatttgagtc 31766425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 275 - 477
Target Start/End: Original strand, 6811284 - 6811486
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 374  Q
    ||||||||| ||||||| | | |||||||||||| ||||||| ||  |||| ||| ||||||||||||||||||||||||||| ||||||  ||||        
T  6811284 agagcatcttcaatggggggtccttacttaacaaagaccactccctgttaaggaccctccattgaaggaagaaaaaatgagtccctattagacaacatac 6811383  T
Q  375 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 474  Q
    ||||||||||||||    |||||| ||| ||||||||||||  || || ||||||||  ||||||||||||||| ||| || ||||||| |||| |||||    
T  6811384 aactatataaggaccctttctctcttggacaactaacgggtatcatgtttaaaagaaaaaataaaatatgtattagtttgttccacttgtaaaataagta 6811483  T
Q  475 ata 477  Q
    |||    
T  6811484 ata 6811486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 474 - 565
Target Start/End: Original strand, 6812053 - 6812144
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||||||| |||||||||||||||||||||| | ||||||||||| ||| |||||||||| |||||||||||||| ||||||||||    
T  6812053 aataaattatttttgtataatgatgtaaagttagtggaacctatttaagtacttttcattggagtctttattagtgtattgccattggagtc 6812144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 473 - 565
Target Start/End: Original strand, 12919069 - 12919161
Alignment:
Q  473 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||||||||| | |||| | | ||||||||||||   |||||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  12919069 taataaattatttttgtttaataaggcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtc 12919161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 514 - 565
Target Start/End: Complemental strand, 17096074 - 17096023
Alignment:
Q  514 ctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  17096074 ctatttaagtacttttcattgaagtccttattagtgtattgtcattggagtc 17096023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 403 - 477
Target Start/End: Complemental strand, 10373949 - 10373875
Alignment:
Q  403 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    |||||||| | ||||||||| |||||||||||||||||||||||   ||||||| ||||| |||||||| |||||    
T  10373949 gcaactaatgtgtcacacgtttaaaagaagtaataaaatatgtacatgttggtctcactttcaaaagaaataata 10373875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 17096661 - 17096581
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgag 355  Q
    ||||||||||||||||| | |  |||||| |||||||||||| | | |||| ||| |||||||| ||||||||||||||||    
T  17096661 agagcatctccaatggggggtcattacttgacaaggaccactcctcgttaaggaccctccattggaggaagaaaaaatgag 17096581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 477
Target Start/End: Original strand, 28188005 - 28188089
Alignment:
Q  392 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    ||||||| || |||||||||||||| || |  |||||||||||||||||||||||   ||||||  ||||| ||||||||||||||    
T  28188005 ctctctcttgagcaactaacgggtctcatgcttaaaagaagtaataaaatatgtacaagttggt-tcactttcaaaagaagtaata 28188089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 476 - 539
Target Start/End: Original strand, 19687610 - 19687673
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 539  Q
    |||||||||||| | ||||||||||||| || |||||  |||||||||| ||| ||||||||||    
T  19687610 taaattatttttgtttaatgatgtaaagatactgggacatatttaagtacttttcattggagtc 19687673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 392 - 477
Target Start/End: Original strand, 24326049 - 24326134
Alignment:
Q  392 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    ||||||| | || ||||||||| || ||| | |||||||||||||||||||||||||   || |||||| | |||||||| |||||    
T  24326049 ctctctcctaggtaactaacggatcccacatttaaaagaagtaataaaatatgtattatatgatcccacgtacaaaagaaataata 24326134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 3e-56; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 275 - 565
Target Start/End: Complemental strand, 25750170 - 25749880
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaa-tgagtctctattatgcaacggg 373  Q
    ||||||||||||||| | |||  ||||||||||| || |||| ||| |||| ||||   ||||| |||||||||||| ||| | | ||||| | |||| |    
T  25750170 agagcatctccaatgagggttctttacttaacaaagatcactccccgttaaggacatctcattggaggaagaaaaaaatgaatttttattaaggaacgag 25750071  T
Q  374 gaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagt 473  Q
     ||||  ||||||||   ||||||  | |||||||||||| || ||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||||    
T  25750070 caacttaataaggaccctctctcttctaggcaactaacggatcccacgtgtcaaaaaagtaataaaatatgtactggttggtcccacttgcaaaataagt 25749971  T
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||||||| |||||| |||||||||||||||||  |||||||||||||| || |||||| ||||||||||||||| ||||||||||    
T  25749970 aataaattatttttgtataataatgtaaagttagtgggacatatttaagtatttttca-tggagttcttattagtgtattgccattggagtc 25749880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 270 - 477
Target Start/End: Original strand, 37847195 - 37847402
Alignment:
Q  270 cactaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaa 369  Q
    |||| ||||||||||||||||||| | |||||||||||||||||||| ||| ||||  ||   |||||| |||||||||||||||||  | |||| | ||    
T  37847195 cacttagagcatctccaatgggaggtccttacttaacaaggaccactccccgttaagaacctcccattggaggaagaaaaaatgagttcccattaaggaa 37847294  T
Q  370 cggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaag 469  Q
    |||| |||||||||||||||| ||||||| | || |||||||||||  ||||| ||||||||||||||||||||||| |   ||||||||||| ||||||    
T  37847295 cgggtaactatataaggacattctctctcttaggaaactaacgggttccacgtttaaaagaagtaataaaatatgtactatgtggtcccacttacaaaag 37847394  T
Q  470 aagtaata 477  Q
    ||||||||    
T  37847395 aagtaata 37847402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 406 - 565
Target Start/End: Complemental strand, 42029742 - 42029584
Alignment:
Q  406 actaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagtt 505  Q
    |||||||||||| || | |||||||||||||||||||||||||  |||||| |||||  ||||||| |||||| |||||||| | |||||||||||||||    
T  42029742 actaacgggtcatacatttaaaagaagtaataaaatatgtattatttggtctcacttataaaagaaataataa-ttatttttgtttaatgatgtaaagtt 42029644  T
Q  506 agtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||| |||| |||||||||||||| ||||| |||| |||||||||||||||||||||||||    
T  42029643 agttggatttatttaagtatttttcattgaagtctttattagtgtattgtcattggagtc 42029584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 278 - 477
Target Start/End: Complemental strand, 21848775 - 21848576
Alignment:
Q  278 gcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaac 377  Q
    ||||||||||| || ||| |||||||| |||||| |||| | | |||| ||| |||||||| |||||||||||| ||||| |||||| |||||    |||    
T  21848775 gcatctccaataggggttccttacttagcaaggatcactcctcgttaaggaccctccattggaggaagaaaaaacgagtccctattaagcaacaaacaac 21848676  T
Q  378 tatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    |||||||||||||  |||||| |||||||||||| |||  ||||| |||| |||||||||||||||||||| ||| ||||||||||||||| ||||||||    
T  21848675 tatataaggacattatctctcctgggcaactaacaggttccacgtttaaatgaagtaataaaatatgtattagtttgtcccacttgcaaaaaaagtaata 21848576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 422 - 506
Target Start/End: Original strand, 27957498 - 27957582
Alignment:
Q  422 tgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagtta 506  Q
    |||||||||||||||||||||| || ||||| |||||| ||||||||||| ||||||||||||||| || |||||||||||||||    
T  27957498 tgtaaaagaagtaataaaatatatactggttagtcccaattgcaaaagaaataataaattatttttgtaaaatgatgtaaagtta 27957582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 474 - 565
Target Start/End: Complemental strand, 21848319 - 21848228
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||||||| ||||||||| |||||||||||||| ||||||||||| |||  ||||||||| | ||||||||||| |||||||||||    
T  21848319 aataaattatttttgtataatgatataaagttagtgggacctatttaagtactttttattggagtcttgattagtgtattttcattggagtc 21848228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 333 - 482
Target Start/End: Original strand, 39446159 - 39446308
Alignment:
Q  333 ccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaag 432  Q
    |||||| |||||||||||| ||||| |||||| |||||    |||||||||||||     |||||| |  ||||| |||| ||| | ||| |||||||||    
T  39446159 ccattggaggaagaaaaaacgagtccctattaagcaacaaacaactatataaggattatttctctcctaagcaacaaacgagtctcgcgtctaaaagaag 39446258  T
Q  433 taataaaatatgtattggttggtcccacttgcaaaagaagtaataaatta 482  Q
    |||||||||||||||| |||| ||||||||||||||||||||||| ||||    
T  39446259 taataaaatatgtattagttgatcccacttgcaaaagaagtaatatatta 39446308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 473 - 565
Target Start/End: Original strand, 37456044 - 37456136
Alignment:
Q  473 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||||||||| | |||| ||| ||||||||||||   |||||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  37456044 taataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtc 37456136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 491 - 551
Target Start/End: Original strand, 44059281 - 44059341
Alignment:
Q  491 taatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 551  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  44059281 taatgacgtaaagttagtgggatctatttaagtacttttcattggagtccttattagtgta 44059341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 2968946 - 2968869
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 551  Q
    |||||||||||||| | ||||||||||||||||||||   ||||||||||| ||| | ||||||||||||||||||||    
T  2968946 aataaattatttttgtttaatgatgtaaagttagtggagcctatttaagtacttttcgttggagtccttattagtgta 2968869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 476 - 564
Target Start/End: Original strand, 10624826 - 10624914
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 564  Q
    |||||||||||| | |||| |||||||| ||||||||| |||||||||| |||  |||||||| ||||||||| |||| ||||||||||    
T  10624826 taaattatttttgtttaataatgtaaagatagtgggatatatttaagtacttttaattggagttcttattagtatattctcattggagt 10624914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 473 - 565
Target Start/End: Original strand, 27559033 - 27559125
Alignment:
Q  473 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||||||||| | |||| ||| ||||||||||||   |||||||||||||| |||| || ||||||||| ||||||| ||||||||||    
T  27559033 taataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattaatgtattgccattggagtc 27559125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 392 - 565
Target Start/End: Complemental strand, 28967776 - 28967600
Alignment:
Q  392 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaaga-agtaata----aattatttt 486  Q
    ||||||| | || |||||||||||| ||||| |||||  ||||||||||| | || |  ||||||||||||| ||||   |||||||    |||||||||    
T  28967776 ctctctcttaggtaactaacgggtcccacgtttaaaa--agtaataaaatgtatactacttggtcccacttgtaaaaatgagtaatatgtaaattatttt 28967679  T
Q  487 tatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    | | ||||||||||||| || ||| |  |||||||||| ||| |||||||||| |||||| | ||||||||||||||||    
T  28967678 tgtttaatgatgtaaagataatggaacatatttaagtacttttcattggagtcattattactttattgtcattggagtc 28967600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 275 - 446
Target Start/End: Complemental strand, 3704071 - 3703897
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaa---atgagtctctattatgcaacg 371  Q
    ||||||||| ||| || || ||||||||||| |||||||||| || ||||| ||  ||| |||| || ||||||||   ||||||| | |||||| ||||    
T  3704071 agagcatcttcaacggaaggttcttacttaataaggaccactccctattaaggatcctctattggagaaagaaaaaattatgagtccccattatggaacg 3703972  T
Q  372 gggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgta 446  Q
     | |||||||||||||    || |||| | ||  ||||| ||||| ||||| |||||||||||||||||||||||    
T  3703971 agtaactatataaggatcctctatctcctaggttactaatgggtctcacgtttaaaagaagtaataaaatatgta 3703897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 286 - 465
Target Start/End: Original strand, 36749735 - 36749911
Alignment:
Q  286 aatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataag 385  Q
    |||||||| | | |||||||||||||||||| |||||||| ||  || ||| | |||||||||||||||||  |  ||| | || | | |||||||||||    
T  36749735 aatgggaggtccctacttaacaaggaccactccccattaaggatccttcatcggaggaagaaaaaatgagttcccgttaaggaatgagtaactatataag 36749834  T
Q  386 gacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 465  Q
    |||   ||||||| |||| |||||||||||| ||  | ||||| || |||||||||||||| | |||| |||||||||||    
T  36749835 gac--cctctctcttgggtaactaacgggtcccatatttaaaa-aattaataaaatatgtactagttgttcccacttgca 36749911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 474 - 550
Target Start/End: Original strand, 37847690 - 37847766
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgt 550  Q
    |||||||||||||| | ||| |||||||||| |||| |  ||||||||||||||| |||| ||||||||||||||||    
T  37847690 aataaattatttttgtttaaagatgtaaagtaagtgtggcctatttaagtatttttcattagagtccttattagtgt 37847766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 474 - 553
Target Start/End: Complemental strand, 3703580 - 3703501
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 553  Q
    |||||||||||||| | |||||||||||||||||||||| |||| |||||| |||  |||| | ||||||||| ||||||    
T  3703580 aataaattatttttgtttaatgatgtaaagttagtgggacctatataagtactttttattgtaatccttattaatgtatt 3703501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 474 - 565
Target Start/End: Original strand, 12671787 - 12671878
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||| | |||| |||||| ||||||||||||| |||   |||||| |||||| ||||||||||  |||||||||||||||||| |||||    
T  12671787 aataaatgacttttgtataataatgtaaagttagtaggactcatttaaatatttttcattggagtctgtattagtgtattgtcatttgagtc 12671878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 476 - 546
Target Start/End: Complemental strand, 12863671 - 12863601
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttatta 546  Q
    |||||||||||| | ||| ||| ||||||||||||| |||||||||||||||| |||||  ||||||||||    
T  12863671 taaattatttttgtttaacgatataaagttagtggggtctatttaagtatttttcattgatgtccttatta 12863601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 272 - 477
Target Start/End: Complemental strand, 2969403 - 2969198
Alignment:
Q  272 ctaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacg 371  Q
    |||| ||||||||||||||||| |  ||| |||||||||||| ||     |||| ||  |||||||| ||||||| |||||||||| | || | | |||     
T  2969403 ctaatagcatctccaatgggagctcattaattaacaaggaccgctcattgttaaggatcctccattggaggaagagaaaatgagtccccatcaaggaaca 2969304  T
Q  372 gggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaa 471  Q
     | || ||||||||||     |||||| | ||||||||| ||||| ||||| ||||||||||||||||||||||| |   || || ||||| ||||||||    
T  2969303 tgtaattatataaggattctatctctcctaggcaactaatgggtcccacgtttaaaagaagtaataaaatatgtaatatgtgatctcacttacaaaagaa 2969204  T
Q  472 gtaata 477  Q
    ||||||    
T  2969203 gtaata 2969198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 501 - 589
Target Start/End: Complemental strand, 11916247 - 11916161
Alignment:
Q  501 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtcgagtctttaatagctactttcatt 589  Q
    ||||||||| || |||||||||||||||  ||| ||||| |||||||||||||| |||| |||||  ||| ||||||| ||||||||||    
T  11916247 aagttagtgtgagctatttaagtatttttaatttgagtctttattagtgtattgacattagagtc--gtccttaataggtactttcatt 11916161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 476 - 565
Target Start/End: Original strand, 12184735 - 12184823
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||| ||| | ||||||||||||| ||||||||  |||||||||| ||| ||||| | |  |||||||||||||||||||||||||    
T  12184735 taaattatatttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattgaaat-tttattagtgtattgtcattggagtc 12184823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 392 - 477
Target Start/End: Original strand, 19140982 - 19141067
Alignment:
Q  392 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    ||||||| || ||||||||| |||| || || ||||||||||| ||| ||||||||  |||||||||| || ||||||||||||||    
T  19140982 ctctctcctgagcaactaacaggtctcatgtttaaaagaagtattaagatatgtataagttggtcccattttcaaaagaagtaata 19141067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 439
Target Start/End: Original strand, 12016085 - 12016248
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 374  Q
    ||||||||||||||||| ||| ||||||||||||| | || | |   ||||  || |||||||| |||||||||||| ||||  |||| | | |||        
T  12016085 agagcatctccaatggg-gttccttacttaacaagaatcattccttgttaagcaccctccattggaggaagaaaaaaagagtacctatcaagtaacatat 12016183  T
Q  375 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaa 439  Q
    |||||||||||||| | |||||||  | |||||||||||||| ||||| |||||||| |||||||    
T  12016184 aactatataaggaccttctctctcccgagcaactaacgggtctcacgtttaaaagaaataataaa 12016248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 28967897 - 28967837
Alignment:
Q  297 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 357  Q
    |||||||||||||||||||||||| |||| ||| ||| |||  ||||||||||||||||||    
T  28967897 cttacttaacaaggaccacttcccgttaaggaccctctattagaggaagaaaaaatgagtc 28967837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 501 - 675
Target Start/End: Original strand, 39446348 - 39446521
Alignment:
Q  501 aagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcattnnnnnnnn 597  Q
    |||||||||| |  |||||||||| |||  |||||||||||||  ||||||||||||||||||||   ||||| ||||||  || |||||||            
T  39446348 aagttagtggaacatatttaagtacttttaattggagtcctta--agtgtattgtcattggagtcattgagtccttaataagtattttcatt--aaaaaa 39446443  T
Q  598 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaag 675  Q
    ||||||||||||||||| |||| || | ||||||||||| ||||  ||||| |  ||||||||  |||||||||||||    
T  39446444 ttataaataagtgatgtgtacacgtgtagtccatttaagtagtccatattactgtactaccatcgtggatgctctaag 39446521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 395 - 477
Target Start/End: Original strand, 12671677 - 12671759
Alignment:
Q  395 tctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    ||||||| |||||||||||| |  |||| ||||||||||| ||||||||||||  | | |||||||||  |||||||||||||    
T  12671677 tctcatgagcaactaacgggacctacgtttaaaagaagtattaaaatatgtataaggttgtcccacttttaaaagaagtaata 12671759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 331 - 477
Target Start/End: Complemental strand, 11916429 - 11916292
Alignment:
Q  331 ctccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaaga 430  Q
    |||||||| |||||| ||||||||||   ||||| |||||| | || ||||||||||  | ||||||| | ||||| ||| | ||||||||| |||||||    
T  11916429 ctccattggaggaagtaaaaatgagtacatattaagcaacgagcaaatatataagga--ttctctctcctaggcaattaatgagtcacacgtttaaaaga 11916332  T
Q  431 agtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    |||||||       || | |||||||| |||||||||||||||||||    
T  11916331 agtaata-------tactagttggtccaacttgcaaaagaagtaata 11916292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 481
Target Start/End: Original strand, 12184619 - 12184695
Alignment:
Q  405 aactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagtaataaatt 481  Q
    ||||||||||||||| || ||||| ||||||||||||||||| |  |||||| |||||||| |||| |||||||||||    
T  12184619 aactaacgggtcacatgtttaaaa-aagtaataaaatatgtactacttggtctcacttgcataaaggagtaataaatt 12184695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 275 - 356
Target Start/End: Complemental strand, 14332676 - 14332596
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagt 356  Q
    ||||||||||||| ||| ||  ||||||||| ||||||| || || ||||| ||| ||||||||||| ||||||||||||||    
T  14332676 agagcatctccaacgggggtc-cttacttaataaggaccgctccctattaaggaccctccattgaagaaagaaaaaatgagt 14332596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 280 - 565
Target Start/End: Complemental strand, 56397375 - 56397091
Alignment:
Q  280 atctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaacta 379  Q
    |||||||||||| | |||||| |||||||||| |||||||| |||| ||| || ||||| || |  ||||||||||||| || || ||||  |   ||||    
T  56397375 atctccaatggg-gcttcttatttaacaaggatcacttcccgttaaagacccttcattggagaagaaaaaaatgagtctttactaagcaatagacgacta 56397277  T
Q  380 tataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaa 479  Q
    ||||||||  | |||| |||| ||||||||||||||||||| |||||||||| |||||||||||| | | |||| ||| ||||| ||||||||| |||||    
T  56397276 tataaggattttctctttcataggcaactaacgggtcacacatgtaaaagaaataataaaatatgcagtagttgatccgacttgtaaaagaagttataaa 56397177  T
Q  480 ttatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||| |||||||||||||||||| ||  |  |||||||||||||| ||||| |||||||||| | |||||||||||||||||    
T  56397176 ttatttttgtataatgatgtaaagttaatgacacatatttaagtatttttcattgaagtccttattcgcgtattgtcattggagtc 56397091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 271 - 671
Target Start/End: Original strand, 37450621 - 37451019
Alignment:
Q  271 actaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaac 370  Q
    |||| |||||||| ||||||  ||| |||||||||||| ||| ||| ||| |||| ||| | | |||| ||||||||||  ||||||||||||| |||||    
T  37450621 actatgagcatcttcaatggaggttccttacttaacaatgactactccccgttaaggaccc-ctattggaggaagaaaa--tgagtctctattaagcaac 37450717  T
Q  371 ggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaaga 470  Q
    | | ||||||||||||||   | ||||  | ||||||||||||  | |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37450718 gagcaactatataaggaccctccctcttctaggcaactaacggaccccacgtgtaaaagaagtaataaaatatgtattggttgatcccacttgcaaaaga 37450817  T
Q  471 agtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtat----tttccattggagtccttattagtgtattgtcattggagtc- 565  Q
    |||||||||||||||||   |||||||||||| ||||||| | ||||||||||||    |||  |||| |||| | |||||| ||||||||||||||||     
T  37450818 agtaataaattatttttgggtaatgatgtaaaattagtgg-acctatttaagtatattttttttattgaagtcatcattagtatattgtcattggagtca 37450916  T
Q  566 --gagtctttaatagctactttcattnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattat 663  Q
      ||||| ||||    ||||||||||        |||||||||||||| ||  ||||||  | || |||||||||||| |||||| | |||||||||| |    
T  37450917 ttgagtccttaag---tactttcattaaaaaa--ttataaataagtgacgtgcacatgtgggatctatttaagaagtccctattaatggactaccattgt 37451011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 275 - 465
Target Start/End: Original strand, 51175280 - 51175469
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 374  Q
    ||||||||||||||||| | | |||||||||||||||||||| ||| |||| ||| |||||||| |||||||||||||||||| |  ||| | ||||||     
T  51175280 agagcatctccaatggggggtccttacttaacaaggaccactccccgttaaggaccctccattggaggaagaaaaaatgagtccccgttaaggaacgggc 51175379  T
Q  375 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 465  Q
    ||||||||||||||   |||||||||||| |||||||||||| ||||| ||||| || ||||||||| |||| |  |||||||||||||||    
T  51175380 aactatataaggaccctctctctcatgggtaactaacgggtcccacgtttaaaa-aattaataaaatgtgtactacttggtcccacttgca 51175469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 271 - 675
Target Start/End: Complemental strand, 31768124 - 31767732
Alignment:
Q  271 actaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaac 370  Q
    |||||||||||||| |||||| | | |||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||||||| |  ||| | | |    
T  31768124 actaagagcatctcaaatggggggtccttacttaacaaggaccactccccgttaaggaccctccattgaaggaagaaaaaatgagtcaccgttaaggatc 31768025  T
Q  371 ggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttg-caaaag 469  Q
    | | ||||||||||| ||   ||||||| |||| |||||||||||| ||||| ||||| |||||||||||| |||| |  || ||||||||||  ||||     
T  31768024 gagcaactatataagaactctctctctcctgggtaactaacgggtcccacgtttaaaa-aagtaataaaatgtgtactacttagtcccacttgtaaaaat 31767926  T
Q  470 aagtaa----taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
     |||||    |||||||||||| | |||| |||||||  |||       |||||||||| ||| ||||||||||| ||||||||||||||||||          
T  31767925 gagtaataggtaaattatttttgtttaatcatgtaaatatag-------tatttaagtacttttcattggagtccatattagtgtattgtcatt------ 31767839  T
Q  566 gagtctttaatagctactttcattnnnnnnnnttataaataagtgatgt-ttacatgtatggtccatttaagaagtctctattagtagactaccattatg 664  Q
    ||||| ||||||| |||||| |||        ||||||||||||||||| | ||||| |  ||||||||||||||||  ||||||   ||||||||| ||    
T  31767838 gagtccttaataggtacttttatt--aaaaaattataaataagtgatgtgtcacatgga--gtccatttaagaagtccttattagagaactaccattgtg 31767743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 473 - 674
Target Start/End: Complemental strand, 13678715 - 13678514
Alignment:
Q  473 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 569  Q
    ||||||||||||||| | |||||||| ||||||||||||   |||||||||| ||| |||| |||||||||||||||||||||||||||||||   ||||    
T  13678715 taataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtgtattgtcattggagtcattgagt 13678616  T
Q  570 ctttaatagctactttcattnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgc 669  Q
    ||||||||  |||||| |||        |||||||||||||| || || | ||  |||||||||||| |||||||||||    |||||||||||||||||    
T  13678615 ctttaataagtacttttatt--aatatattataaataagtgacgtgta-acgtggggtccatttaaggagtctctattaaggaactaccattatggatgc 13678519  T
Q  670 tctaa 674  Q
    |||||    
T  13678518 tctaa 13678514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 426 - 585
Target Start/End: Complemental strand, 44991911 - 44991744
Alignment:
Q  426 aaagaagtaataaaatatgtattggttggtcccacttg-caaaagaagtaa----taaattatttttatataatgatgtaaagttagtgggatctattta 520  Q
    |||| ||||||||||| |||| |  |||||||||||||  ||||| |||||    |||||||||||| | ||||||||||||| ||||||||  ||||||    
T  44991911 aaaggagtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaataggtaaattatttttgtttaatgatgtaaagatagtgggacatattta 44991812  T
Q  521 agtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctacttt 585  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||   ||||| ||||||| ||||||    
T  44991811 agtatttttcattggagtccttattagtgtattgccattggagtcattgagtccttaataggtacttt 44991744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 476 - 565
Target Start/End: Original strand, 12191524 - 12191613
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12191524 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtatttttcattggagtccttattagtgtattgtcattggagtc 12191613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 275 - 434
Target Start/End: Original strand, 4711248 - 4711403
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 374  Q
    ||||||||||||||||| ||| |||||||||||||||||||| |||||| | ||  ||| |||| ||||||||||||||||||  ||||| ||||| |      
T  4711248 agagcatctccaatgggggtt-cttacttaacaaggaccactccccattgaagat-ctctattggaggaagaaaaaatgagtccatattaagcaactgac 4711345  T
Q  375 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagta 434  Q
    |||||||||| |||   ||||||| ||| ||||||||||||||| ||| |||||||||||    
T  4711346 aactatataaagact--ctctctcttggacaactaacgggtcacgcgtttaaaagaagta 4711403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 474 - 563
Target Start/End: Original strand, 38068088 - 38068177
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag 563  Q
    |||||||||||||| | |||||||||||||||||||||  ||||||||||| |||  ||||||||||||||||||||| | |||||||||    
T  38068088 aataaattatttttgtttaatgatgtaaagttagtggggcctatttaagtactttttattggagtccttattagtgtactctcattggag 38068177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 296 - 465
Target Start/End: Original strand, 38068284 - 38068452
Alignment:
Q  296 tcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctct 395  Q
    ||||||||||||||||| ||| ||| ||||  || |||||||| |||||||||||| ||||| |  ||| | |||| | |||||||||||||| | ||||    
T  38068284 tcttacttaacaaggactactccccgttaagaaccctccattggaggaagaaaaaacgagtcccccttaaggaacgagtaactatataaggacct-ctct 38068382  T
Q  396 ctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 465  Q
    ||| |||| |||||||| ||| ||||| ||||| || ||||||||| |||| |  |||||||||||||||    
T  38068383 ctcctgggtaactaacgagtctcacgtttaaaaaaaataataaaatgtgtactacttggtcccacttgca 38068452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 297 - 564
Target Start/End: Complemental strand, 45832400 - 45832132
Alignment:
Q  297 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctc 396  Q
    |||||||||||||||||||| ||  |||| ||| |||||||| ||||||||||||| |||| |  |||   ||| |  |||||||||| |||   |||||    
T  45832400 cttacttaacaaggaccactcccagttaaggaccctccattggaggaagaaaaaataagtcaccgttaaagaacagacaactatataaagaccctctctc 45832301  T
Q  397 tcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaa-gaagtaataa----attatttttatat 491  Q
    || |||| |||||||||||  ||||| ||||| |||||||||||| |||| |  ||||||||||||  |||| | ||||||||    ||||||||| | |    
T  45832300 tcctgggtaactaacgggttccacgtttaaaa-aagtaataaaatgtgtactacttggtcccacttttaaaaagcagtaataagtaaattatttttgttt 45832202  T
Q  492 aatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 564  Q
    ||||   ||||| |||| | |  ||||||||||  || ||||||||||||||||||||||||| |||||||||    
T  45832201 aatg---taaagatagtagaacatatttaagtacctttcattggagtccttattagtgtattgccattggagt 45832132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 271 - 477
Target Start/End: Original strand, 38067602 - 38067807
Alignment:
Q  271 actaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaac 370  Q
    ||||||| |||||  |||||||| | |||||||||||||||||||| ||  ||||  || | |||||| ||||||||||||||| || | |||| | |||    
T  38067602 actaagaacatctttaatgggaggtccttacttaacaaggaccactccctgttaagaaccc-ccattggaggaagaaaaaatgaatccccattaaggaac 38067700  T
Q  371 ggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaaga 470  Q
     || ||||||||||| |    ||||||| | || ||||||||| |  ||||| ||||||||||||||||||||||| |   ||||||| ||| |||||||    
T  38067701 aggtaactatataagaatcccctctctcctaggtaactaacggatttcacgtttaaaagaagtaataaaatatgtaatatgtggtcccgcttacaaaaga 38067800  T
Q  471 agtaata 477  Q
    |||||||    
T  38067801 agtaata 38067807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 476 - 585
Target Start/End: Original strand, 51175526 - 51175638
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctt 572  Q
    |||||||||||  | ||||||||||||| ||||||||  ||||||||||||||  |||||||||||||||| ||||||| ||||||||||   ||||| |    
T  51175526 taaattattttcgtttaatgatgtaaagatagtgggacatatttaagtattttgaattggagtccttattaatgtattgccattggagtcattgagtcct 51175625  T
Q  573 taatagctacttt 585  Q
    |||||| ||||||    
T  51175626 taataggtacttt 51175638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 36904174 - 36904251
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 551  Q
    |||||||||||||| | ||||||||||||||||||||   ||||||||||||||| || |||||||||||||||||||    
T  36904174 aataaattatttttgtttaatgatgtaaagttagtggagcctatttaagtatttttcactggagtccttattagtgta 36904251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 473 - 565
Target Start/End: Complemental strand, 5744896 - 5744804
Alignment:
Q  473 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||||||||| | |||| ||| ||||||||||||   |||||||||||||| |||| || ||||||||||||||||| ||||||||||    
T  5744896 taataaattatttttgtttaataatgcaaagttagtggggcatatttaagtatttttcatttgaatccttattagtgtattgccattggagtc 5744804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 474 - 565
Target Start/End: Complemental strand, 27064545 - 27064454
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||||||| ||||||||||||||||||||| ||  |||||||  | |||  |||||||||| |||||||||||||||||| |||||    
T  27064545 aataaattatttttgtataatgatgtaaagttagtgagacatatttaaacagtttttattggagtccctattagtgtattgtcattagagtc 27064454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 474 - 565
Target Start/End: Complemental strand, 27085649 - 27085558
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||||||| ||||||||||||||||||||| ||  |||||||  | |||  |||||||||| |||||||||||||||||| |||||    
T  27085649 aataaattatttttgtataatgatgtaaagttagtgagacatatttaaacagtttttattggagtccctattagtgtattgtcattagagtc 27085558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 275 - 479
Target Start/End: Complemental strand, 44992099 - 44991898
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctatt-atgcaacggg 373  Q
    ||||||||||||||||| ||  |||||||||||||||||||| ||| |||| ||| |||||||| |||||||||||||||||| |  || |   ||||||    
T  44992099 agagcatctccaatgggggtc-cttacttaacaaggaccactccccgttaaggaccctccattggaggaagaaaaaatgagtccccgttaaaagaacggg 44992001  T
Q  374 gaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaag 472  Q
     ||||||||||||||   ||||||| | || ||||||| || | ||| | ||||| |||||||||||| |||| |  ||||||||||||||| |||| ||    
T  44992000 caactatataaggac--tctctctcctaggtaactaac-ggccccacctttaaaa-aagtaataaaatgtgtactatttggtcccacttgcataaaggag 44991905  T
Q  473 taataaa 479  Q
    |||||||    
T  44991904 taataaa 44991898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 275 - 465
Target Start/End: Original strand, 12191279 - 12191467
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 374  Q
    ||||||||||||||||| ||  |||||||||||||||||| | ||| |||| ||| || ||||||||||||||||||| ||||    ||||| |||| |     
T  12191279 agagcatctccaatgggggtc-cttacttaacaaggaccagtccccgttaaggacccttcattgaaggaagaaaaaattagtcctcgttatggaacgagc 12191377  T
Q  375 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 465  Q
    ||||||||||||||   ||||||| || | ||  |||||||| || || ||||| |||||||| ||| |||| |  |||||||||||||||    
T  12191378 aactatataaggactctctctctcctgagtaatgaacgggtcccaagtataaaa-aagtaatataatgtgtactacttggtcccacttgca 12191467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 297 - 479
Target Start/End: Original strand, 40445546 - 40445725
Alignment:
Q  297 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctc 396  Q
    ||||||||||||||||||||  ||||||| ||| |||||||| || ||||||||||||||| |  |||   |||    ||||||||||||||   |||||    
T  40445546 cttacttaacaaggaccactctccattaaggaccctccattggagaaagaaaaaatgagtc-cccttaaagaacaaacaactatataaggac--tctctc 40445642  T
Q  397 tcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagtaataaa 479  Q
    ||||| | |||||||||||| ||||| ||||| |||||||||||| |||| || |||  |||||||||| |||| |||||||||    
T  40445643 tcatgagtaactaacgggtcccacgtttaaaa-aagtaataaaatgtgtactgcttgaccccacttgcataaaggagtaataaa 40445725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 429 - 553
Target Start/End: Original strand, 4711545 - 4711665
Alignment:
Q  429 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 528  Q
    |||||||||||||||||| |  ||  ||| ||||| ||||||| ||||||||||||||| | |||||||||||||||||||  |  ||||||||    ||    
T  4711545 gaagtaataaaatatgtactacttaatccaacttgtaaaagaaataataaattatttttgtttaatgatgtaaagttagtgcaacatatttaag----tt 4711640  T
Q  529 ccattggagtccttattagtgtatt 553  Q
     ||||||||||||||||| ||||||    
T  4711641 tcattggagtccttattaatgtatt 4711665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 475 - 577
Target Start/End: Complemental strand, 38168227 - 38168122
Alignment:
Q  475 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtct 571  Q
    ||||||||||||| | |||||||||||| ||||||||   |||||||||| ||| ||||||||||||||||| ||||||   |||||||||   ||||||    
T  38168227 ataaattatttttgtttaatgatgtaaaattagtggggcttatttaagtacttttcattggagtccttattaatgtatttctattggagtcattgagtct 38168128  T
Q  572 ttaata 577  Q
    ||||||    
T  38168127 ttaata 38168122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 431 - 585
Target Start/End: Original strand, 38068459 - 38068627
Alignment:
Q  431 agtaataaaatatgtattggttggtcccacttgcaaaa-gaagtaata----aattatttttatataatgatgtaaagttagtggga------tctattt 519  Q
    ||||||||||| |||| |  ||||||||||||| |||| | |||||||    |||||||||| | ||||||||||||| ||||||||      | |||||    
T  38068459 agtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaatatgtaaattatttttctttaatgatgtaaagatagtgggacatatttatattt 38068558  T
Q  520 aagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctacttt 585  Q
    ||||| ||| | |||||||||||||||||||||||||||| |||||   ||||| ||||||| ||||||    
T  38068559 aagtacttttctttggagtccttattagtgtattgtcattagagtcattgagtccttaataggtacttt 38068627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 426 - 552
Target Start/End: Original strand, 40445712 - 40445843
Alignment:
Q  426 aaagaagtaataaaatatgtattggttggtcccacttg-caaaagaagtaa----taaattatttttatataatgatgtaaagttagtgggatctattta 520  Q
    |||| ||||||||||| |||| |  |||||||||||||  ||||| |||||    ||||| |||||| | ||||||||||||| |||||||   ||||||    
T  40445712 aaaggagtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaataggtaaatcatttttgtttaatgatgtaaagatagtgggccatattta 40445811  T
Q  521 agtattttccattggagtccttattagtgtat 552  Q
    |||||||| | |||||||||||||||||||||    
T  40445812 agtatttttcgttggagtccttattagtgtat 40445843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 481 - 585
Target Start/End: Complemental strand, 17058900 - 17058793
Alignment:
Q  481 tatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaata 577  Q
    ||||||| | ||||||||||||| |||||||  ||||||||||| ||| |||| ||||||||||||||||| |   |||||||||   ||||| ||||||    
T  17058900 tatttttgtttaatgatgtaaagatagtggggcctatttaagtacttttcatttgagtccttattagtgtactcctattggagtcattgagtccttaata 17058801  T
Q  578 gctacttt 585  Q
    ||||||||    
T  17058800 gctacttt 17058793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 392 - 477
Target Start/End: Complemental strand, 36622366 - 36622281
Alignment:
Q  392 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    ||||||| || |||||||||||||| ||| | ||||||||||||| |||||| |||  |||||||||||||  |||||||||||||    
T  36622366 ctctctcctgagcaactaacgggtcccacatttaaaagaagtaatcaaatatatataagttggtcccacttttaaaagaagtaata 36622281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 473 - 549
Target Start/End: Complemental strand, 13665858 - 13665782
Alignment:
Q  473 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtg 549  Q
    ||||||||||||||| | |||||||| ||||||||||||   |||||||||| ||| |||| |||||||||||||||    
T  13665858 taataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtg 13665782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 473 - 560
Target Start/End: Complemental strand, 30483010 - 30482923
Alignment:
Q  473 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 560  Q
    |||||||||| |||| |||||||||||||||||| || || |||||||| ||||||  |||||||||  ||||| |||||| ||||||    
T  30483010 taataaattacttttgtataatgatgtaaagttaatgcgacctatttaaatattttttattggagtctctattaatgtattatcattg 30482923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 404 - 507
Target Start/End: Complemental strand, 49551892 - 49551789
Alignment:
Q  404 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaag 503  Q
    |||||||| |||| || ||  |||||||||||||||||||||||  |||| ||| |||| | ||| || ||||||||||||||| | |||| ||||||||    
T  49551892 caactaacaggtctcatgttcaaaagaagtaataaaatatgtatgagttgatcctactttctaaataactaataaattatttttgtgtaataatgtaaag 49551793  T
Q  504 ttag 507  Q
    ||||    
T  49551792 ttag 49551789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 474 - 551
Target Start/End: Original strand, 19853994 - 19854071
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 551  Q
    |||||||||||||| | | |||||||||||||||||||  ||||||||||| |||  |||  ||||||||||||||||    
T  19853994 aataaattatttttgtttgatgatgtaaagttagtggggcctatttaagtactttttattaaagtccttattagtgta 19854071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 272 - 386
Target Start/End: Original strand, 39718868 - 39718982
Alignment:
Q  272 ctaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacg 371  Q
    |||||| |||||||||| |  | | ||||||||| |||||||||| ||| |||| ||| || ||||| ||||||||||||||||| ||  ||| | ||||    
T  39718868 ctaagaacatctccaatagagggtccttacttaataaggaccactccccgttaaggactcttcattgcaggaagaaaaaatgagtttccgttaaggaacg 39718967  T
Q  372 gggaactatataagg 386  Q
     | ||||||||||||    
T  39718968 agcaactatataagg 39718982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 564
Target Start/End: Complemental strand, 56228294 - 56228205
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 564  Q
    ||||||||| |||| | ||||||||||| ||||||||  ||||||||| || ||| ||||||||||||||||| |||| |  |||||||||    
T  56228294 aataaattagttttgtttaatgatgtaa-gttagtggtgtctatttaaatacttttcattggagtccttattaatgtacttccattggagt 56228205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 32409313 - 32409373
Alignment:
Q  299 tacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctc 359  Q
    |||||||||||||||||| ||| |||| ||  |||||||| |||||||| |||||||||||    
T  32409313 tacttaacaaggaccactccccgttaaggatcctccattggaggaagaacaaatgagtctc 32409373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 540
Target Start/End: Original strand, 34929264 - 34929320
Alignment:
Q  484 ttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtcc 540  Q
    ||||||||||| ||||||||||||||| |  |||||| ||||||| |||||||||||    
T  34929264 ttttatataataatgtaaagttagtggaacatatttaggtatttttcattggagtcc 34929320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 477
Target Start/End: Complemental strand, 27064631 - 27064573
Alignment:
Q  419 acgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    |||| |||||||||||| |||||||||||  |||||| |||||| | ||||||||||||    
T  27064631 acgtttaaaagaagtaagaaaatatgtataagttggttccactttcgaaagaagtaata 27064573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 419 - 477
Target Start/End: Complemental strand, 27085735 - 27085677
Alignment:
Q  419 acgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    |||| |||||||||||| |||||||||||  |||||| |||||| | ||||||||||||    
T  27085735 acgtttaaaagaagtaagaaaatatgtataagttggttccactttcgaaagaagtaata 27085677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 4e-46; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 392 - 589
Target Start/End: Complemental strand, 25701729 - 25701529
Alignment:
Q  392 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatat 491  Q
    ||||||||| | |||||||||| || ||||||||||||||||||||||||||||   |||| |||||||||||||||||| ||||||||||||||| |||    
T  25701729 ctctctcatcgacaactaacggatcccacgtgtaaaagaagtaataaaatatgttccggtttgtcccacttgcaaaagaaataataaattatttttgtat 25701630  T
Q  492 aatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcat 588  Q
    ||| |||||||||| ||| ||  |||||||||| |||  |||| ||| ||||||||||||||||||||||||||   || || ||||||| |||||||||    
T  25701629 aataatgtaaagttggtgagacttatttaagtacttttaattgaagttcttattagtgtattgtcattggagtctttgaatccttaataggtactttcat 25701530  T
Q  589 t 589  Q
    |    
T  25701529 t 25701529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 392 - 565
Target Start/End: Original strand, 47142675 - 47142848
Alignment:
Q  392 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatat 491  Q
    ||||||| | |||||||||| | || ||||| ||||||||||||||||||||||| |  ||||||   ||||||||| |||||||||||||||||| | |    
T  47142675 ctctctcctaggcaactaacagatctcacgtttaaaagaagtaataaaatatgtactatttggtcttccttgcaaaataagtaataaattatttttgttt 47142774  T
Q  492 aatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    | |||||||||||||||| || ||||||||||| ||| ||||||||||||||||||| | ||||||||||||||    
T  47142775 agtgatgtaaagttagtgagacctatttaagtagttttcattggagtccttattagtatcttgtcattggagtc 47142848  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 273 - 477
Target Start/End: Original strand, 28131092 - 28131296
Alignment:
Q  273 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgg 372  Q
    ||||||||||||||||||||| ||||||||||||||||| |||| || ||||| ||| | |||||| |||||||||||||||||   ||||| | |||||    
T  28131092 taagagcatctccaatgggaggttcttacttaacaaggatcactccctattaaagaccccccattggaggaagaaaaaatgagttcttattaaggaacgg 28131191  T
Q  373 ggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaag 472  Q
    |  ||||||||| |||    |||||| |  |||||||| ||||  ||||| ||||| || |||||| |||||||||  |||||||||||||||||||||     
T  28131192 gtcactatataaagactctttctctcctaagcaactaatgggttccacgtttaaaataaataataatatatgtattacttggtcccacttgcaaaagaaa 28131291  T
Q  473 taata 477  Q
    |||||    
T  28131292 taata 28131296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 273 - 465
Target Start/End: Original strand, 19610900 - 19611091
Alignment:
Q  273 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgg 372  Q
    ||||||||||||||||||| | | |||| ||||||||||| |||| || |||| ||| |||||||| |||||||||||||||||| |  ||| | |||||    
T  19610900 taagagcatctccaatggggggtccttatttaacaaggactactttccgttaaggaccctccattggaggaagaaaaaatgagtccccgttaaggaacgg 19610999  T
Q  373 ggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 465  Q
    | |||||||||||||| | ||||||| |  | |||||||||||| ||||| ||||| || ||||||||| |||| |  |||||||||||||||    
T  19611000 gtaactatataaggaccttctctctcttaagtaactaacgggtctcacgtttaaaa-aattaataaaatgtgtactacttggtcccacttgca 19611091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 279 - 482
Target Start/End: Complemental strand, 1560103 - 1559900
Alignment:
Q  279 catctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaact 378  Q
    |||||||||||| || | |||||||||||| ||||||| | | |||| ||| | |||||| ||||||||||||||| ||  | ||| |||||    ||||    
T  1560103 catctccaatggaaggtccttacttaacaaagaccactcctcgttaaggactccccattggaggaagaaaaaatgaatccatgttaagcaacatacaact 1560004  T
Q  379 atataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataa 478  Q
    ||||||||||   || ||||||||||||||| | |||| ||||| ||||| ||||||||||||||||| | ||||||| ||||||||| ||||||||||     
T  1560003 atataaggaccatctttctcatgggcaactagcaggtctcacgtttaaaaaaagtaataaaatatgtactagttggtcacacttgcaacagaagtaatat 1559904  T
Q  479 atta 482  Q
    ||||    
T  1559903 atta 1559900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 393 - 565
Target Start/End: Original strand, 46981748 - 46981920
Alignment:
Q  393 tctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatata 492  Q
    ||||||||| |||||||||||||| ||| |  ||||||| |||||||| |||||   ||||||| | | | ||||||||||||| ||||| |||| ||||    
T  46981748 tctctcatgagcaactaacgggtctcacattcaaaagaaataataaaacatgtagaagttggtctcgcgttcaaaagaagtaatgaattacttttgtata 46981847  T
Q  493 atgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||||||||||| ||  ||||||  || ||| || || ||  ||||||||||||||||||||||||||    
T  46981848 atgatgtaaagttagtgagacttatttagatacttttcaatgaagctcttattagtgtattgtcattggagtc 46981920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 474 - 564
Target Start/End: Complemental strand, 1559680 - 1559590
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 564  Q
    ||||||| |||||| ||||||||||||||||||||| || ||||||||||||||| |||| |||| ||||||||||||||| |||||||||    
T  1559680 aataaataatttttgtataatgatgtaaagttagtgagacctatttaagtatttttcattagagttcttattagtgtattgacattggagt 1559590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 474 - 565
Target Start/End: Original strand, 31833957 - 31834048
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||||  ||| |||| |||||||||||| | | |||||||||    
T  31833957 aataaattatttttgtttaatgatgtaaagttagtgggatctatttaagtattttttattagagttcttattagtgtacttttattggagtc 31834048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 474 - 565
Target Start/End: Original strand, 32552306 - 32552397
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||| || ||||| | |||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||| | |||||||||||    
T  32552306 aataatttttttttgtttaatgatgtaaagttaatgggacctatttaagtatttttcattggagtccttattagtgtactctcattggagtc 32552397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 473 - 674
Target Start/End: Original strand, 23059103 - 23059304
Alignment:
Q  473 taataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagt 569  Q
    ||||||||||||||| | |||||||| ||||||||||||   |||||||||| ||| |||| ||||||||||||||| |||| ||||||||||   ||||    
T  23059103 taataaattatttttgtttaatgatgcaaagttagtggggcatatttaagtacttttcatttgagtccttattagtggattgccattggagtcattgagt 23059202  T
Q  570 ctttaatagctactttcattnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgc 669  Q
    ||||||||  |||||| |||        |||||||||||||| || || | ||  |||||||||||| ||||| |||||    |||||||||||||||||    
T  23059203 ctttaataagtacttttatt--aatatattataaataagtgacgtgta-acgtggggtccatttaaggagtctttattaaggaactaccattatggatgc 23059299  T
Q  670 tctaa 674  Q
    |||||    
T  23059300 tctaa 23059304  T

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Target: chr3; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 392 - 509
Target Start/End: Complemental strand, 32722031 - 32721914
Alignment:
Q  392 ctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatat 491  Q
    ||||||| || ||||||||||| ||  || | ||||||||||||||||||||||||  |||||||  |||| ||||||| ||||||||||| ||||  ||    
T  32722031 ctctctcctgagcaactaacggatcctacatttaaaagaagtaataaaatatgtataagttggtcttactttcaaaagatgtaataaattacttttgaat 32721932  T
Q  492 aatgatgtaaagttagtg 509  Q
    ||||||||||||||||||    
T  32721931 aatgatgtaaagttagtg 32721914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 275 - 473
Target Start/End: Complemental strand, 1292230 - 1292033
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 374  Q
    ||||||||| |||||| || | |||||||||||| || ||||    ||||| ||| | |||||| | ||||||||||||||| || |||| | ||| ||     
T  1292230 agagcatcttcaatggaagatccttacttaacaaagatcactctttattaaggaccc-ccattggaagaagaaaaaatgagtatccattaagaaacaggt 1292132  T
Q  375 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagt 473  Q
    ||||||||||||||    |||||| | |||||||||||| || ||||| ||||||||||||||||||||||| |  |||||| || || ||||||||||    
T  1292131 aactatataaggactctatctctcctaggcaactaacggatcccacgtttaaaagaagtaataaaatatgtactatttggtctcatttccaaaagaagt 1292033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 476 - 585
Target Start/End: Original strand, 19611149 - 19611261
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctt 572  Q
    |||||||||||| | ||||||||||||| ||||||||  |||||||||| ||| ||||| | | ||||||||||||||||||||||||||   ||||| |    
T  19611149 taaattatttttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattgaatttcttattagtgtattgtcattggagtcattgagtcct 19611248  T
Q  573 taatagctacttt 585  Q
    |||||| ||||||    
T  19611249 taataggtacttt 19611261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 1151687 - 1151610
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 551  Q
    |||||||||||||| | |||||||||||||||||||||  ||||||||||| |||  |||||||||||||||||||||    
T  1151687 aataaattatttttgtttaatgatgtaaagttagtggggcctatttaagtactttttattggagtccttattagtgta 1151610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 342 - 477
Target Start/End: Original strand, 38585784 - 38585919
Alignment:
Q  342 gaagaaaaaatgagtctctattatgcaacggggaactatataagga-catgctctctcatgggcaactaacgggtcacacgtgtaaaa-gaagtaataaa 439  Q
    |||||||||||||||||| |||| |||||||  ||||||||||||| ||| |||||||||  | |||||||||||| ||||| ||||| ||| |||||||    
T  38585784 gaagaaaaaatgagtctc-attaagcaacggacaactatataaggatcat-ctctctcataagaaactaacgggtcgcacgtttaaaaagaaataataaa 38585881  T
Q  440 atatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    ||||||||| |||||||  | || ||||||||||||||    
T  38585882 atatgtattagttggtcttatttacaaaagaagtaata 38585919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 476 - 565
Target Start/End: Original strand, 55222401 - 55222490
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||||| | ||||||||||||| ||||| ||  |||||||||| ||| |||||||||  |||||||||||||||||||||||||    
T  55222401 taaattatttttgtttaatgatgtaaagatagtgagacatatttaagtaattttcattggagtatttattagtgtattgtcattggagtc 55222490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 514 - 674
Target Start/End: Original strand, 38585977 - 38586138
Alignment:
Q  514 ctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaatagctactttcattnnnnnnnnttataaataagtg 610  Q
    |||||||||||| ||  ||||||||| |||||||||||||||||||||||||   ||||| ||||||||||||||||||        ||||||||||||     
T  38585977 ctatttaagtatatttgattggagtctttattagtgtattgtcattggagtcattgagtccttaatagctactttcatt--aaaaaattataaataagta 38586074  T
Q  611 atgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaa 674  Q
    | || |||| ||   ||||||||||| ||||| | |||||  ||||||||| ||||||||||||    
T  38586075 acgtgtacaagtgaagtccatttaaggagtctatgttagtgtactaccattgtggatgctctaa 38586138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 273 - 446
Target Start/End: Complemental strand, 1152160 - 1151987
Alignment:
Q  273 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgg 372  Q
    ||||||| ||||||||| ||  | ||||||||| ||||| || | ||| |||| ||| |||||||| ||||||||||||||||||   |||| | ||||     
T  1152160 taagagcgtctccaatgagaagtccttacttaataaggatcattccccgttaaggaccctccattggaggaagaaaaaatgagtcctcattaagaaacga 1152061  T
Q  373 ggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgta 446  Q
    | || |||||||| ||   ||||||| | ||||||||| || || | ||| |||||||||||||||||||||||    
T  1152060 gtaattatataagtaccctctctctcctaggcaactaagggatcccgcgtttaaaagaagtaataaaatatgta 1151987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 277 - 477
Target Start/End: Original strand, 33428592 - 33428792
Alignment:
Q  277 agcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaa 376  Q
    ||||||||||||||||| | |||||| |||||||| |||| ||| |||| |||   |||||| ||||||| | |||||||| |  ||| | ||||   ||    
T  33428592 agcatctccaatgggaggtccttactgaacaaggatcactccccgttaaggacctcccattggaggaagagataatgagtccccgttaagtaacgaataa 33428691  T
Q  377 ctatataagg-acatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaa 475  Q
    |||||||||| |||| ||||||| | | ||| ||||||||| || || ||||| |||||||||||||||||||   ||||||||| |  |||||||||||    
T  33428692 ctatataaggtacat-ctctctcctagacaaataacgggtctcatgtttaaaaaaagtaataaaatatgtattatgtggtcccacatagaaaagaagtaa 33428790  T
Q  476 ta 477  Q
    ||    
T  33428791 ta 33428792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 279 - 479
Target Start/End: Complemental strand, 3936073 - 3935875
Alignment:
Q  279 catctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaact 378  Q
    ||||||||||||| ||  ||||||||||||||||| ||  || |||| ||| |||||||| | |||||||||||||||| || ||| | ||||   ||||    
T  3936073 catctccaatgggggtc-cttacttaacaaggaccgctctccgttaaggaccctccattggaagaagaaaaaatgagtccctgttaaggaacgaaaaact 3935975  T
Q  379 atataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataa 478  Q
    ||||||||||   ||||||| |||| |||||||||||   || | ||||| |||||||||||| |||| |  ||  ||||||||| ||||| ||||||||    
T  3935974 atataaggaccctctctctcttgggtaactaacgggttcaacatttaaaa-aagtaataaaatgtgtactacttaatcccacttgtaaaaggagtaataa 3935876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 277 - 439
Target Start/End: Complemental strand, 35540709 - 35540547
Alignment:
Q  277 agcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaa 376  Q
    ||||||| ||||||||| | |||| |||||||||| ||||  |  ||||  |  |||||||| ||||||||||||||||||  ||||| | |||  | ||    
T  35540709 agcatcttcaatgggaggtccttatttaacaaggatcactctctgttaagtatcctccattggaggaagaaaaaatgagtcaatattaagtaacatgtaa 35540610  T
Q  377 ctatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaa 439  Q
    |||||||||||  | ||||||| | ||||||||||||||| ||| | |||||||| |||||||    
T  35540609 ctatataaggattttctctctcctaggcaactaacgggtctcacatttaaaagaaataataaa 35540547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 474 - 560
Target Start/End: Complemental strand, 37526851 - 37526766
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 560  Q
    ||||||||||||| |||||||||||||||||||||   || |||||||||||||| ||||| ||||  ||||||| |||||||||||    
T  37526851 aataaattatttt-atataatgatgtaaagttagtaaaatatatttaagtatttttcattgaagtctctattagtttattgtcattg 37526766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 459 - 528
Target Start/End: Complemental strand, 7325633 - 7325564
Alignment:
Q  459 acttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtatttt 528  Q
    ||||| ||||||||||||||||||||||| | ||||||||||||||||||| ||  ||||||| ||||||    
T  7325633 acttgtaaaagaagtaataaattatttttgtttaatgatgtaaagttagtgagaaatatttaaatatttt 7325564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 285 - 477
Target Start/End: Original strand, 32551926 - 32552113
Alignment:
Q  285 caatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataa 384  Q
    ||||||||| | ||||||||||||||||||||  |  |||| ||| |||||||| ||||||||||||||| |||| ||||   |||||| || | |||||    
T  32551926 caatgggaggtccttacttaacaaggaccactctctgttaaggaccctccattggaggaagaaaaaatgaatctccattaaaaaacgggtaattgtataa 32552025  T
Q  385 ggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    ||   | ||||| | |  |||||||||||     |||| | ||||||||||||||| |||||||   ||||||| ||| ||||||||||||||    
T  32552026 gggttttctctcccctatgcaactaacgg-----acgttttaaagaagtaataaaacatgtattatgtggtcccgcttacaaaagaagtaata 32552113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 275 - 479
Target Start/End: Original strand, 1292318 - 1292517
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 374  Q
    |||||||||||||||||  |  |||||||||||||||| ||| ||| |||| | | |||||||  |||||||||||||||||| |  ||| | |||        
T  1292318 agagcatctccaatggg--taccttacttaacaaggac-actcccctttaagggccctccattcgaggaagaaaaaatgagtccccgttaaggaacaaac 1292414  T
Q  375 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca-aaagaagt 473  Q
    ||||||||||||||   ||||||| | || |||||||||||| ||| | ||||| |||||||||||| |||| |  ||||||||||||||| |||| |||    
T  1292415 aactatataaggacc--ctctctcctaggtaactaacgggtcccacatttaaaa-aagtaataaaatgtgtactaattggtcccacttgcataaaggagt 1292511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 491 - 674
Target Start/End: Original strand, 28131342 - 28131526
Alignment:
Q  491 taatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggag---tcgagtctttaatagctactttca 587  Q
    ||||||||||||||||||| ||  |||||||||| |||  || ||||||||| ||||||||||  ||||||||   ||| ||||||||||| |||||| |    
T  28131342 taatgatgtaaagttagtgagacttatttaagtaatttttatgggagtccttgttagtgtattaccattggagtcatcgggtctttaatagatactttta 28131441  T
Q  588 ttnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaa 674  Q
    ||        ||||||||||||||||| ||||||   | |||||||||| |||| ||||||  ||| ||||||| | ||||||||||    
T  28131442 tt-aaaaaaattataaataagtgatgtgtacatgcgggatccatttaaggagtccctatta-aagattaccattgtagatgctctaa 28131526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 429 - 506
Target Start/End: Original strand, 40242606 - 40242684
Alignment:
Q  429 gaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaatta-tttttatataatgatgtaaagtta 506  Q
    ||||||||||||||||||||  ||  |||||||| ||||||||||||| ||||| ||||| |||||| |||||||||||    
T  40242606 gaagtaataaaatatgtattaattaatcccacttacaaaagaagtaattaattattttttgtataataatgtaaagtta 40242684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 475 - 560
Target Start/End: Original strand, 14903368 - 14903453
Alignment:
Q  475 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattg 560  Q
    ||||||||||||| | |||||||| ||||||||||||   ||||||  || ||| |||| ||||| ||||||||||||||||||||    
T  14903368 ataaattatttttgtttaatgatgcaaagttagtggggcatatttatatacttttcatttgagtcattattagtgtattgtcattg 14903453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 519 - 563
Target Start/End: Original strand, 1294572 - 1294616
Alignment:
Q  519 taagtattttccattggagtccttattagtgtattgtcattggag 563  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||    
T  1294572 taagtacttttcattggagtccttattagtgtattgtcattggag 1294616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 475 - 565
Target Start/End: Complemental strand, 5992285 - 5992202
Alignment:
Q  475 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||||||||| ||||||||||||| ||||||||  ||| |       || ||||||||||||||||||||||||||||||| ||||    
T  5992285 ataaattatttttatttaatgatgtaaagatagtgggacatatct-------tttcattggagtccttattagtgtattgtcattgaagtc 5992202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 627 - 675
Target Start/End: Original strand, 40243198 - 40243246
Alignment:
Q  627 tccatttaagaagtctctattagtagactaccattatggatgctctaag 675  Q
    |||||||||| |||||||||||||||| ||||||| |||||||||||||    
T  40243198 tccatttaaggagtctctattagtagattaccattgtggatgctctaag 40243246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 475 - 554
Target Start/End: Complemental strand, 3935834 - 3935755
Alignment:
Q  475 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattg 554  Q
    ||||||||||||| | ||||||||||||| || || ||  |||||||||| ||| ||||||||||||| |||| ||||||    
T  3935834 ataaattatttttgtttaatgatgtaaagataatgagacatatttaagtacttttcattggagtccttgttagagtattg 3935755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 478 - 565
Target Start/End: Original strand, 13778185 - 13778271
Alignment:
Q  478 aattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||| |||||||||||||||||| ||||||| ||  |||||||| | ||| |||||||||| || ||| |||||||||||| |||||    
T  13778185 aattacttttatataatgatgtaa-gttagtgagacatatttaagcacttttcattggagtctttgttaatgtattgtcattagagtc 13778271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 518 - 565
Target Start/End: Original strand, 48098387 - 48098434
Alignment:
Q  518 ttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||||  |||||||||||||||| ||||||||||||||||||    
T  48098387 ttaagtattttttattggagtccttattaatgtattgtcattggagtc 48098434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 402 - 479
Target Start/End: Original strand, 48098288 - 48098365
Alignment:
Q  402 ggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaataaa 479  Q
    ||||||||||| |||  |||| |||||||| |||||||||||||| |  || |||| ||||| |||||||||||||||    
T  48098288 ggcaactaacgagtcctacgtttaaaagaactaataaaatatgtactacttagtcctacttgtaaaagaagtaataaa 48098365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 625 - 674
Target Start/End: Original strand, 47142901 - 47142950
Alignment:
Q  625 ggtccatttaagaagtctctattagtagactaccattatggatgctctaa 674  Q
    |||||||||||| ||||||| ||||| |||||||||| |||||| |||||    
T  47142901 ggtccatttaaggagtctcttttagtggactaccattgtggatggtctaa 47142950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 3e-41; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 275 - 565
Target Start/End: Original strand, 1581284 - 1581578
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 374  Q
    ||||||||||||||||  | | |||| ||||||||||||||||| | |||| ||| || ||||| ||||||||||||||| |    ||||   ||||||     
T  1581284 agagcatctccaatggagggtccttatttaacaaggaccacttctcgttaaggactcttcattggaggaagaaaaaatgaattcgcattaaagaacgggc 1581383  T
Q  375 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaaga-agt 473  Q
    ||||||||||||||   ||||||| |||| |||||||||||| | ||| ||||| |||||||||||| |||| |  ||||||||||||| ||||   |||    
T  1581384 aactatataaggaccctctctctcctgggtaactaacgggtctcgcgtttaaaa-aagtaataaaatgtgtactacttggtcccacttgtaaaaatgagt 1581482  T
Q  474 aataa----attatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||    ||||||||| | ||||||||||||| ||||||||  |||||||||| ||| ||||||||||||||||| |||||||||||| |||||    
T  1581483 aataagtaaattatttttgtttaatgatgtaaagatagtgggacatatttaagtacttttcattggagtccttattaatgtattgtcattcgagtc 1581578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 474 - 673
Target Start/End: Complemental strand, 7177152 - 7176952
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 570  Q
    |||||||||||||| ||||||| ||||||||||||||||  |||||||||| ||| |||||||| |||||||||||||||||||||||||||   |||||    
T  7177152 aataaattatttttgtataatggtgtaaagttagtgggacttatttaagtacttttcattggagcccttattagtgtattgtcattggagtcattgagtc 7177053  T
Q  571 tttaatagctactttcattnnnnnnnnttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgct 670  Q
     ||||||| ||||||||||        |||||||||| |||||| |||| ||  ||||||| |||||||||  |||||||  |||| |||||||||||||    
T  7177052 cttaatagatactttcatt--aaaaaattataaataaatgatgtgtacacgtggggtccatataagaagtccttattagtgtactatcattatggatgct 7176955  T
Q  671 cta 673  Q
    |||    
T  7176954 cta 7176952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 474 - 565
Target Start/End: Complemental strand, 22800667 - 22800576
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||||||||  || ||||||||||| ||||||||||||||||||||||||    
T  22800667 aataaattacttttgtataatgatgtaaagttagtgggacctatttaagtacatttcattggagtccctattagtgtattgtcattggagtc 22800576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 267 - 474
Target Start/End: Complemental strand, 45251436 - 45251232
Alignment:
Q  267 atgcactaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaa-aaaatgagtctctattat 365  Q
    |||| ||||||| ||||| ||||| || ||||||||||||||||  |||| ||| |||| |||  | ||||| |||||||| |||||||||| || |||     
T  45251436 atgctctaagagtatctcaaatggaaggttcttacttaacaaggtacactccccgttaaggactttgcattggaggaagaaaaaaatgagtccctcttaa 45251337  T
Q  366 gcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 465  Q
    |||| |   ||||||||||||||   ||||||| |  |||||||||||||| ||||| ||||||||||||||||| ||||| | ||||||| ||||||||    
T  45251336 gcaatgtacaactatataaggac--cctctctcct--gcaactaacgggtcccacgtttaaaagaagtaataaaacatgtactagttggtctcacttgca 45251241  T
Q  466 aaagaagta 474  Q
    |||||||||    
T  45251240 aaagaagta 45251232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 272 - 387
Target Start/End: Original strand, 5423308 - 5423423
Alignment:
Q  272 ctaagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacg 371  Q
    |||||||||||||||||||| | | |||||||||||||||||||| ||| |||| ||| |||||||||||||||||||||||||||    ||| | ||||    
T  5423308 ctaagagcatctccaatggggggtccttacttaacaaggaccactccccgttaaggaccctccattgaaggaagaaaaaatgagtcctcgttaaggaacg 5423407  T
Q  372 gggaactatataagga 387  Q
    || |||||||||||||    
T  5423408 ggcaactatataagga 5423423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 275 - 477
Target Start/End: Complemental strand, 12796494 - 12796294
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgggg 374  Q
    ||||||||| |||| |||| | ||||||||||||||| |||| ||  ||||  || |||||||| |||||||||||| |||||  ||||| ||||| |      
T  12796494 agagcatcttcaataggaggtccttacttaacaaggatcactccctgttaaataccctccattggaggaagaaaaaaagagtccttattaagcaacagac 12796395  T
Q  375 aactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagta 474  Q
    |||||||||| |||   ||||||| | ||||||||||| ||| ||  | |||| ||| |||||||||||||| | |||| ||||||||||||||||||||    
T  12796394 aactatataatgacc--ctctctcctaggcaactaacgagtctcaaatttaaaggaattaataaaatatgtactagttgatcccacttgcaaaagaagta 12796297  T
Q  475 ata 477  Q
    |||    
T  12796296 ata 12796294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 286 - 477
Target Start/End: Complemental strand, 29638073 - 29637882
Alignment:
Q  286 aatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataag 385  Q
    |||||||| | ||||||||| ||||||||||||   ||||  ||  |||||||  ||||||||||||||||| | |||| | ||| || || | ||||||    
T  29638073 aatgggagatccttacttaataaggaccacttcttgttaagaactttccattgggggaagaaaaaatgagtccccattaaggaacaggtaattgtataag 29637974  T
Q  386 gacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    |||   || |||| | |||||||||||  || |||||||||||||||||||||||||| ||||   ||||||| ||| ||||||||||||||    
T  29637973 gactctctttctcctaggcaactaacgaatctcacgtgtaaaagaagtaataaaatatatattatgtggtcccgcttacaaaagaagtaata 29637882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 476 - 565
Target Start/End: Complemental strand, 14523260 - 14523171
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||||| | ||||||||||||| |||||| |  |||||||||| ||| || |||||||||||||||||||||||||||| ||||    
T  14523260 taaattatttttgtttaatgatgtaaagatagtggaacatatttaagtacttttcagtggagtccttattagtgtattgtcattgaagtc 14523171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 474 - 565
Target Start/End: Complemental strand, 11989808 - 11989717
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||| ||||| ||||||||||||| |||||| ||  |||||||| | ||| ||||||||||| | ||||||||||||||||||||||    
T  11989808 aataaattacttttacataatgatgtaaaattagtgagacatatttaagcacttttcattggagtccatgttagtgtattgtcattggagtc 11989717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 335 - 477
Target Start/End: Original strand, 13281957 - 13282097
Alignment:
Q  335 attgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagta 434  Q
    |||||||||||||||||||||||  ||||| | || | |  ||| |||||||||   ||||||| | |||||||||||| ||  || |||||||||||||    
T  13281957 attgaaggaagaaaaaatgagtcattattaaggaatgagtcactctataaggact--ctctctcgtaggcaactaacggatcttacatgtaaaagaagta 13282054  T
Q  435 ataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    |||| ||||||| |  |||||| ||||||||||||||||||||    
T  13282055 ataatatatgtactacttggtctcacttgcaaaagaagtaata 13282097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 477 - 551
Target Start/End: Complemental strand, 12796029 - 12795955
Alignment:
Q  477 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 551  Q
    ||||||||||| | |||||||||||||||||||||  ||||||||||| ||| |||||||||||||| |||||||    
T  12796029 aaattatttttgtttaatgatgtaaagttagtggggcctatttaagtacttttcattggagtccttactagtgta 12795955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 333 - 477
Target Start/End: Complemental strand, 22800837 - 22800695
Alignment:
Q  333 ccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaag 432  Q
    |||||| |||||||||||||| ||   ||||| | ||| || |||||||||| |||   ||||||| || ||||||||||| || ||||   ||||||||    
T  22800837 ccattggaggaagaaaaaatgggtacttattaggtaacaggcaactatataacgact--ctctctcctgagcaactaacggatcccacgatcaaaagaag 22800740  T
Q  433 taataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    |||||||||||||||  ||||| ||||||| ||||||||||||||    
T  22800739 taataaaatatgtataagttgggcccactttcaaaagaagtaata 22800695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 403 - 477
Target Start/End: Complemental strand, 7177449 - 7177375
Alignment:
Q  403 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    ||||||||||| || ||||| |||||||| |||||||||||||| | |||| ||||||||| |||||||||||||    
T  7177449 gcaactaacggatctcacgtttaaaagaattaataaaatatgtactagttgatcccacttgtaaaagaagtaata 7177375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 273 - 477
Target Start/End: Original strand, 41437968 - 41438171
Alignment:
Q  273 taagagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgg 372  Q
    ||||||||||| ||||||||| | |||| ||||||| ||||||| ||  |||| ||| | |||||| ||||||| ||||||||||   |||| | |||      
T  41437968 taagagcatcttcaatgggaggtccttagttaacaaagaccactccctgttaacgaccc-ccattggaggaagagaaaatgagtcctcattaaggaacaa 41438066  T
Q  373 ggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaag 472  Q
      || |||||||||||   |||| |  | |||||||||| |||  | ||| |||||||||||||||||||||||||   ||||||||||| ||||| |||    
T  41438067 ataattatataaggaccctctctttactaggcaactaaccggtaccgcgtttaaaagaagtaataaaatatgtattatgtggtcccacttacaaaataag 41438166  T
Q  473 taata 477  Q
    |||||    
T  41438167 taata 41438171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 474 - 565
Target Start/End: Complemental strand, 8693123 - 8693032
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||| |||| |||||| ||||||||||||| ||| ||||||||  | ||| ||||||| |||||||| || ||||||||||| ||||    
T  8693123 aataaattacttttgtataataatgtaaagttagtaggacctatttaacaacttttcattggaatccttattggtttattgtcattgaagtc 8693032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 515 - 565
Target Start/End: Original strand, 5423517 - 5423567
Alignment:
Q  515 tatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||| ||| ||||| ||||||||||||||||||||||||||||||    
T  5423517 tatttaagtacttttcattgaagtccttattagtgtattgtcattggagtc 5423567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 476 - 565
Target Start/End: Complemental strand, 12532417 - 12532328
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||||||| | ||||||||||||| ||||||||  | |||||||| ||| |||| || || |||||||||||||  ||||||||||    
T  12532417 taaattatttttgtttaatgatgtaaagatagtgggacatgtttaagtacttttcattagaatctttattagtgtattaccattggagtc 12532328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 431 - 539
Target Start/End: Original strand, 43976594 - 43976707
Alignment:
Q  431 agtaataaaatatgtattggttggtcccacttgcaaaa-gaagtaata----aattatttttatataatgatgtaaagttagtgggatctatttaagtat 525  Q
    ||||||||||| |||| |  ||||||||||||| |||| | |||||||    |||| ||||| | ||||||||||||| ||||||||| ||||||||||     
T  43976594 agtaataaaatgtgtactacttggtcccacttgtaaaaaggagtaataggtcaattgtttttgtttaatgatgtaaagatagtgggatatatttaagtac 43976693  T
Q  526 tttccattggagtc 539  Q
    ||| ||||||||||    
T  43976694 ttttcattggagtc 43976707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 475 - 565
Target Start/End: Original strand, 13282128 - 13282221
Alignment:
Q  475 ataaattatttttatataatgatgtaaagttagtgggatctatttaagta---ttttccattggagtccttattagtgtattgtcattggagtc 565  Q
    |||||||| |||| | ||||||||||||||||||||||||||||||| ||   |||  ||| ||||| ||  |||||||||||||||| |||||    
T  13282128 ataaattagttttgtttaatgatgtaaagttagtgggatctatttaattactttttgtcatgggagttctggttagtgtattgtcattagagtc 13282221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 598 - 675
Target Start/End: Complemental strand, 22800539 - 22800462
Alignment:
Q  598 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctctaag 675  Q
    |||||||||| |||||| |||||||   ||||||||||| |||  ||||||||  ||||||||| |||||||||||||    
T  22800539 ttataaataaatgatgtgtacatgtggagtccatttaaggagttcctattagtgtactaccattgtggatgctctaag 22800462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 277 - 357
Target Start/End: Complemental strand, 12532662 - 12532582
Alignment:
Q  277 agcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtc 357  Q
    |||||||| |||||||  | |||| |||| ||||| | || |||||||| ||| || ||||||||||||||||||||||||    
T  12532662 agcatctctaatgggaagtccttatttaagaaggatcgctccccattaaggacccttcattgaaggaagaaaaaatgagtc 12532582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 465
Target Start/End: Complemental strand, 14523439 - 14523317
Alignment:
Q  342 gaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaat 441  Q
    ||||||||||||||| | | ||| | |||| | |||||||||||||| | ||||||| || | ||||| |||||  ||||| ||||| || |||||||||    
T  14523439 gaagaaaaaatgagtttatgttaaggaacgagcaactatataaggactttctctctcctgagtaactatcgggtttcacgtttaaaa-aaataataaaat 14523341  T
Q  442 atgtattggttggtcccacttgca 465  Q
    ||||| |  || ||||||||||||    
T  14523340 atgtactactttgtcccacttgca 14523317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 9e-32; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 439 - 560
Target Start/End: Original strand, 4898156 - 4898278
Alignment:
Q  439 aatatgtattggttggtcccacttgcaaaagaagtaataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagt 538  Q
    |||||| | |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||| ||  |||||||||| ||| |||||||||    
T  4898156 aatatgcactggttggtcccacttgtaaaagaagtaataaattatttttgtataataatgtaaagctagtgagacttatttaagtacttttcattggagt 4898255  T
Q  539 -ccttattagtgtattgtcattg 560  Q
     ||||||||||||||||||||||    
T  4898256 cccttattagtgtattgtcattg 4898278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 474 - 565
Target Start/End: Complemental strand, 31066423 - 31066332
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||| |||| ||||||||||||||||||||||||  |||||||||||||| ||||||| ||| |||||||||||||||||| |||||    
T  31066423 aataaattacttttgtataatgatgtaaagttagtgggacatatttaagtatttttcattggaatccatattagtgtattgtcattagagtc 31066332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 474 - 564
Target Start/End: Original strand, 565353 - 565443
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagt 564  Q
    |||||||||||||| ||||||||| |||| ||||||| |  |||||||||| ||| || ||||||||||||||||||||||||||||||||    
T  565353 aataaattatttttttataatgatctaaatttagtggaacatatttaagtacttttcaatggagtccttattagtgtattgtcattggagt 565443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 340 - 477
Target Start/End: Original strand, 2552655 - 2552790
Alignment:
Q  340 aggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaa 439  Q
    |||||||||||||||||| |  ||| | |||||| |||||||||||||  | ||||||| | ||||||||||| ||| ||||| || |||||||| ||||    
T  2552655 aggaagaaaaaatgagtccccgttaaggaacgggtaactatataagga--ttctctctcctaggcaactaacgagtcccacgtttagaagaagtagtaaa 2552752  T
Q  440 atatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    |||||||||   ||||||| |||  |||||||||||||    
T  2552753 atatgtattatgtggtcccgcttataaaagaagtaata 2552790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 474 - 585
Target Start/End: Complemental strand, 31046481 - 31046367
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtc 570  Q
    ||||||||| |||| |||||||||||||||||||| |||  ||||||||||||||  |||| | ||| ||||||||||||||| || |||||   |||||    
T  31046481 aataaattacttttgtataatgatgtaaagttagtcggacatatttaagtattttttattgaaatccatattagtgtattgtctttagagtcattgagtc 31046382  T
Q  571 tttaatagctacttt 585  Q
     ||||||| ||||||    
T  31046381 cttaatagatacttt 31046367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 474 - 565
Target Start/End: Original strand, 4396221 - 4396312
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||| |||| ||||||||||||||||||||| |  ||||||||||||||| ||||  ||||||| ||||| || || ||||||||||    
T  4396221 aataaattacttttttataatgatgtaaagttagtgtggcctatttaagtatttttcattaaagtccttgttagtatactgccattggagtc 4396312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 598 - 672
Target Start/End: Complemental strand, 4740408 - 4740334
Alignment:
Q  598 ttataaataagtgatgtttacatgtatggtccatttaagaagtctctattagtagactaccattatggatgctct 672  Q
    ||||||||||||||||| ||||  |  ||||||||||| |||| ||||||||| |||||||||||||||||||||    
T  4740408 ttataaataagtgatgtgtacacatgaggtccatttaaaaagtttctattagtggactaccattatggatgctct 4740334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 475 - 565
Target Start/End: Complemental strand, 8517016 - 8516926
Alignment:
Q  475 ataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc 565  Q
    ||||||||||||| | ||||||||||||| |||||| |  ||||||||||||||  |||||||| | | |||||||||||||||| |||||    
T  8517016 ataaattatttttgtttaatgatgtaaagatagtggaacatatttaagtattttttattggagttcatgttagtgtattgtcattagagtc 8516926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 515 - 564
Target Start/End: Complemental strand, 15958789 - 15958740
Alignment:
Q  515 tatttaagtattttccattggagtccttattagtgtattgtcattggagt 564  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  15958789 tatttaagtacttttcattggagtccttattagtgtattgtcattggagt 15958740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 403 - 477
Target Start/End: Complemental strand, 12883597 - 12883523
Alignment:
Q  403 gcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||| |  ||| || ||||| ||||||||||||||    
T  12883597 gcaactaacgggtcccacgtttaaaaaaagtaataaaatatgtactatttgatctcacttacaaaagaagtaata 12883523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 565
Target Start/End: Complemental strand, 12883274 - 12883183
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta-ttgtcattggagtc 565  Q
    ||||||||||||||   ||||||| |||||| |||||| | |||||||||| ||| ||||||||| |||||||||||| || |||||||||||    
T  12883274 aataaattatttttgcttaatgatataaagtaagtggggtatatttaagtacttttcattggagt-cttattagtgtacttctcattggagtc 12883183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 297 - 465
Target Start/End: Complemental strand, 15959029 - 15958862
Alignment:
Q  297 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctc 396  Q
    ||||||||| ||||||||||   | ||||  || |||||||| ||||||||||||||| || || ||| | |||||  ||||||||||||||   || ||    
T  15959029 cttacttaagaaggaccactcatcgttaagaaccctccattggaggaagaaaaaatgaatccctgttaagaaacggacaactatataaggaccatctttc 15958930  T
Q  397 tcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgca 465  Q
    || || | ||||||||| || ||||| ||||| |||||||||||| |||| |  |||||| ||||||||    
T  15958929 tcttgagtaactaacggatcccacgtttaaaa-aagtaataaaatgtgtactacttggtctcacttgca 15958862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 562
Target Start/End: Complemental strand, 30313056 - 30312968
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattgga 562  Q
    |||||||||||||| | ||||||||||||||||||| || ||  |||| |||||| ||||||||||  ||||||| ||||  |||||||    
T  30313056 aataaattatttttgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtctatattagtatatttccattgga 30312968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 279 - 358
Target Start/End: Original strand, 564979 - 565057
Alignment:
Q  279 catctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtct 358  Q
    ||||||||||| |  || |||||||||||||||||||| ||| || | ||| | ||||||||||||||||||||||||||    
T  564979 catctccaatgaggattccttacttaacaaggaccactccccgttgaggactc-ccattgaaggaagaaaaaatgagtct 565057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 2552221 - 2552266
Alignment:
Q  271 actaagagcatctccaatgggagtttcttacttaacaaggaccact 316  Q
    ||||||||||||||||||||||| | |||||||||||||| |||||    
T  2552221 actaagagcatctccaatgggaggtccttacttaacaagggccact 2552266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 474 - 539
Target Start/End: Complemental strand, 30350476 - 30350411
Alignment:
Q  474 aataaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtc 539  Q
    |||||||||||||| | ||||||||||||||||||| || ||  |||| |||||| ||||||||||    
T  30350476 aataaattatttttgtttaatgatgtaaagttagtgagacctgattaaatatttttcattggagtc 30350411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 477 - 551
Target Start/End: Original strand, 2553196 - 2553270
Alignment:
Q  477 aaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 551  Q
    |||||||||||   |||||||||||||||||||  || |||||||||| ||| || || | ||||||||||||||    
T  2553196 aaattatttttggttaatgatgtaaagttagtgaaatatatttaagtacttttcactgaaatccttattagtgta 2553270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 297 - 448
Target Start/End: Complemental strand, 8517235 - 8517089
Alignment:
Q  297 cttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctc 396  Q
    |||||||||||||||  ||||||| |||| ||  || ||||| ||||||||||||  ||||||  ||| | |||   ||||||||||||||    |||||    
T  8517235 cttacttaacaaggattacttcccgttaaggatccttcattggaggaagaaaaaagaagtctccgttaaggaacaaagaactatataagga----ctctc 8517140  T
Q  397 tcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtatt 448  Q
    || |||| || ||||||||| || || ||||| |||||||||||| ||||||    
T  8517139 tcctgggtaattaacgggtcccatgtttaaaa-aagtaataaaatgtgtatt 8517089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 477
Target Start/End: Original strand, 4395654 - 4395727
Alignment:
Q  404 caactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    ||||||||  ||| ||||| ||||||||||||||||| |||||||  |||||  ||  ||||||||||||||||    
T  4395654 caactaacatgtctcacgtttaaaagaagtaataaaacatgtattaattggtttcatctgcaaaagaagtaata 4395727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 275 - 473
Target Start/End: Complemental strand, 33766 - 33569
Alignment:
Q  275 agagcatctccaatgggagtttcttacttaacaaggaccacttcccattaatgacactccattgaaggaagaaaaaatgagtctctattatgcaacgg-g 373  Q
    ||||||||||||||| ||| | ||||||| |||||||||||| ||  |||| |||   |||||| |||||||||||||||||| | |||| | |||||      
T  33766 agagcatctccaatgcgaggtccttactttacaaggaccactccctgttaaggacctcccattggaggaagaaaaaatgagtccccattaaggaacggaa 33667  T
Q  374 gaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaagtaataaaatatgtattggttggtcccacttgcaaaagaagt 473  Q
     ||||||| ||||||   |||||||||  |||||||||||||   |||| ||||||||||||||||||||| | |  || |||||| || ||||||||||    
T  33666 caactatagaaggac--tctctctcataagcaactaacgggttcaacgtttaaaagaagtaataaaatatgcactatttagtcccatttacaaaagaagt 33569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 476 - 551
Target Start/End: Complemental strand, 33317 - 33242
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgta 551  Q
    |||||||||||||| ||||||||||||| ||||| || ||||||||||| ||| ||||| ||||||| | ||||||    
T  33317 taaattatttttatttaatgatgtaaagatagtgagacctatttaagtacttttcattgaagtccttgtaagtgta 33242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 333 - 477
Target Start/End: Original strand, 175210 - 175354
Alignment:
Q  333 ccattgaaggaagaaaaaatgagtctctattatgcaacggggaactatataaggacatgctctctcatgggcaactaacgggtcacacgtgtaaaagaag 432  Q
    |||||| ||||||||||||||||| || |||| | |||| | |||||||||||| |   ||||||| |  ||||||||  |||  ||||| |||||||||    
T  175210 ccattgtaggaagaaaaaatgagtttccattaaggaacgagcaactatataagggccctctctctcctaagcaactaataggtttcacgtttaaaagaag 175309  T
Q  433 taataaaatatgtattggttggtcccacttgcaaaagaagtaata 477  Q
    |||||||||||||| |  ||| |||||||  ||||||||||||||    
T  175310 taataaaatatgtactatttgatcccactaccaaaagaagtaata 175354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0568 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0568
Description:

Target: scaffold0568; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 481 - 585
Target Start/End: Complemental strand, 833 - 726
Alignment:
Q  481 tatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtattgtcattggagtc---gagtctttaata 577  Q
    ||||||| | ||||||||||||| |||||||  ||||||||||| ||| |||| ||||||||||||||||| |   |||||||||   ||||| ||||||    
T  833 tatttttgtttaatgatgtaaagatagtggggcctatttaagtacttttcatttgagtccttattagtgtactcctattggagtcattgagtccttaata 734  T
Q  578 gctacttt 585  Q
    ||||||||    
T  733 gctacttt 726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 476 - 553
Target Start/End: Complemental strand, 11567 - 11490
Alignment:
Q  476 taaattatttttatataatgatgtaaagttagtgggatctatttaagtattttccattggagtccttattagtgtatt 553  Q
    |||||||||||| | ||||||||||||| |  |||||  |||||||||| ||| |||| |||||||||||||| ||||    
T  11567 taaattatttttgtttaatgatgtaaagattatgggacatatttaagtacttttcatttgagtccttattagtatatt 11490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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