View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18236_low_9 (Length: 544)
Name: NF18236_low_9
Description: NF18236
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18236_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 18 - 541
Target Start/End: Original strand, 15139907 - 15140430
Alignment:
| Q |
18 |
gatataattaagaagatgaaagcaacatatttgtaagtaagtatttgtaatattt-gatgatgaggaacaaacataaaatgacagtaggtagaatgcaac |
116 |
Q |
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| T |
15139907 |
gatataattaagaagatgaaagcaacatatttgtaagtaagtatttgtaatattttgatgatgaggaacaaacataaaatgacaataggtagaatgcaac |
15140006 |
T |
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| Q |
117 |
agggtgaaaccatataacctggtgaacataannnnnnnccaaatgaattaatgtgatgatgaaacactgaaaagaaagttgaacaagaaaatctaactat |
216 |
Q |
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| T |
15140007 |
agggttaaaccatataacctggtgaacataatttttttccaaatgaattaatgtgatgatgaaacactgaaaagaaagttgaacaagaaaatctaactat |
15140106 |
T |
|
| Q |
217 |
attcatgaaaatttgaacttcactctctcagaatagttgttatcttctctccctttctttgcacctgctgcattagcacctctgtaagttacataatgac |
316 |
Q |
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| T |
15140107 |
attcatgaaaattcgaacttcactctctcagaatagttgttatcttctctccctttctttgcacctgctgcattagcacctctgtaagttacataatgac |
15140206 |
T |
|
| Q |
317 |
taaaagaagaactcattactttcatttcctcactctcatctgacacaccacaaaagcttgtcagctcattatgctgttttctcatataatccctttgacc |
416 |
Q |
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| T |
15140207 |
taaaagaagaactcattactttcatttcctcactctcatctgacacaccacaaaagcttgtcagctcattatgctgttttctcatataatccctttgacc |
15140306 |
T |
|
| Q |
417 |
attcattcatttacatgnnnnnnnngttgaaaaatgtagaaactcatgattttttcttcttctattttctattgaggtattaatgatttagattacctaa |
516 |
Q |
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| T |
15140307 |
attcattcatttacatgaaaaaaaagttgaaaaatgtagaaactcatgatttttt-ttcttctattttctattgaggtattaatgatttagattacctaa |
15140405 |
T |
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| Q |
517 |
taacttcatcatttattgctttcat |
541 |
Q |
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| T |
15140406 |
taacttcatcatttattgctttcat |
15140430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 166 - 268
Target Start/End: Complemental strand, 31282622 - 31282520
Alignment:
| Q |
166 |
aatgtgatgatgaaacactgaaaagaaagttgaacaagaaaatctaactatattcatgaaaatttgaacttcactctctcagaatagttgttatcttctc |
265 |
Q |
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||||| ||||| ||||||| |||||||| || |||| || ||||||| || ||||||||||||||||| ||| ||||||| |||||||||||||||| |
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| T |
31282622 |
aatgtaatgataaaacactataaagaaagatggacaacaatatctaacaatgatcatgaaaatttgaactctactatctcagagtagttgttatcttctc |
31282523 |
T |
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| Q |
266 |
tcc |
268 |
Q |
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||| |
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| T |
31282522 |
tcc |
31282520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 541
Target Start/End: Complemental strand, 31282510 - 31282449
Alignment:
| Q |
480 |
attttctattgaggtattaatgatttagattacctaataacttcatcatttattgctttcat |
541 |
Q |
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||||||| |||| ||||| ||||||||| ||||| ||||||||||| |||||| ||||||| |
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| T |
31282510 |
attttctgttgaactattagtgatttagaatacctcataacttcatcgtttatttctttcat |
31282449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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